mRNA_P-littoralis_Contig7.325.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.325.1
Unique NamemRNA_P-littoralis_Contig7.325.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:1277246..1278215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size871
Hectar predicted targeting categorymitochondrion
Exons2
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791446.9521136-UTR-P-littoralis_Contig7:1277245..12775521680791446.9521136-UTR-P-littoralis_Contig7:1277245..1277552Pylaiella littoralis U1_48UTRP-littoralis_Contig7 1277246..1277552 -
1680791446.991718-UTR-P-littoralis_Contig7:1278116..12782151680791446.991718-UTR-P-littoralis_Contig7:1278116..1278215Pylaiella littoralis U1_48UTRP-littoralis_Contig7 1278117..1278215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791446.9659991-CDS-P-littoralis_Contig7:1277552..12776431680791446.9659991-CDS-P-littoralis_Contig7:1277552..1277643Pylaiella littoralis U1_48CDSP-littoralis_Contig7 1277553..1277643 -
1680791446.9774547-CDS-P-littoralis_Contig7:1277742..12781161680791446.9774547-CDS-P-littoralis_Contig7:1277742..1278116Pylaiella littoralis U1_48CDSP-littoralis_Contig7 1277743..1278116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.325.1prot_P-littoralis_Contig7.325.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 1277553..1278116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.325.1

>prot_P-littoralis_Contig7.325.1 ID=prot_P-littoralis_Contig7.325.1|Name=mRNA_P-littoralis_Contig7.325.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MWTRPVTALARGAAPRPQKQARKRLMKTGHRMTTLVMAVVCWKKRMLMMS
VQEQPINRRRRRTCCRFKPVGARGAQVVAGGRELLRTRPVTALARGGAPR
PQKQARKRLMKTGHRMTTLTMAVVSQTMMLAKSTVMAKKTNSNGTNTPRM
RWIL*
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mRNA from alignment at P-littoralis_Contig7:1277246..1278215-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.325.1 ID=mRNA_P-littoralis_Contig7.325.1|Name=mRNA_P-littoralis_Contig7.325.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=970bp|location=Sequence derived from alignment at P-littoralis_Contig7:1277246..1278215- (Pylaiella littoralis U1_48)
GGTCAAGGGGAACAGCCGCTTCCTAGGAACAACGCAAACCCTTCCATTCA
AGGCCGTCAGCGCTCGGGGCGCGCAAGTAGTCGCCGGGGAAGAAAACTGA
TGTGGACGAGGCCAGTGACAGCCTTGGCAAGAGGGGCCGCGCCACGCCCC
CAGAAGCAGGCGAGGAAGAGGTTGATGAAGACGGGTCACAGGATGACGAC
ATTAGTGATGGCGGTGGTTTGCTGGAAGAAGAGAATGTTGATGATGAGCG
TCCAGGAACAGCCGATCAACAGGAGGAGGAGGAGAACGTGCTGCAGATTC
AAGCCCGTCGGCGCTCGGGGCGCGCAAGTAGTCGCAGGGGGAAGAGAACT
GTTGCGAACGAGGCCAGTGACAGCCTTGGCAAGAGGCGGCGCGCCACGCC
CCCAGAAGCAGGCGAGGAAGAGGTTGATGAAGACGGGTCACAGGATGACG
ACATTAACGATGGCGGTGGTTTCCTGGAAGAAGAGAATGTTGATGATGAG
CGTCCAGGAACAGCCGGTCAACAGGAGGATGATAGCGAAGACGGCGACGA
TGGCGAAGACGAAGATGTTGGCGCAGACGATGATGTTGGCGAAGTCGACG
GTGATGGCGAAGAAGACGAACAGCAATGGGACGAATACGCCTAGAATGAG
GTGGATACTCTGAACGGGCTTCGACAACCACTTGACGCCAACATCACACG
TGGTGCTACACAAAACCTCGATGATCCTCGAGATACTTATGTAGATAATA
TCATTCGTCGTATTCTACGTTAGATATTTTCGCGGACTAAGTCTCGAGAG
AAGTATGACAGAGAGAGAAGTGTGCATGAAGAGGAATATTGGTGGAGAGC
CTGACAAGGATATATCGTTGTGCCACTTAAGAGCCTAGGGCACGAAGCAT
ACCAGATATATGGTCGTATCCCCCTAAAACATGTTGACTTGGAGTCTGAT
AGAGGGGTCTTTCTGGCAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:1277246..1278215-

>mRNA_P-littoralis_Contig7.325.1 ID=mRNA_P-littoralis_Contig7.325.1|Name=mRNA_P-littoralis_Contig7.325.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig7:1277246..1278215- (Pylaiella littoralis U1_48)
ATGTGGACGAGGCCAGTGACAGCCTTGGCAAGAGGGGCCGCGCCACGCCC
CCAGAAGCAGGCGAGGAAGAGGTTGATGAAGACGGGTCACAGGATGACGA
CATTAGTGATGGCGGTGGTTTGCTGGAAGAAGAGAATGTTGATGATGAGC
GTCCAGGAACAGCCGATCAACAGGAGGAGGAGGAGAACGTGCTGCAGATT
CAAGCCCGTCGGCGCTCGGGGCGCGCAAGTAGTCGCAGGGGGAAGAGAAC
TGTTGCGAACGAGGCCAGTGACAGCCTTGGCAAGAGGCGGCGCGCCACGC
CCCCAGAAGCAGGCGAGGAAGAGGTTGATGAAGACGGGTCACAGGATGAC
GACATTAACGATGGCGGTGGTTTCGCAGACGATGATGTTGGCGAAGTCGA
CGGTGATGGCGAAGAAGACGAACAGCAATGGGACGAATACGCCTAGAATG
AGGTGGATACTCTGA
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