mRNA_P-littoralis_Contig7.209.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.209.3
Unique NamemRNA_P-littoralis_Contig7.209.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.209.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:822281..825526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size372
Hectar predicted targeting categoryother localisation
Exons4
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791446.6760206-UTR-P-littoralis_Contig7:822280..8223121680791446.6760206-UTR-P-littoralis_Contig7:822280..822312Pylaiella littoralis U1_48UTRP-littoralis_Contig7 822281..822312 -
1680791446.6922696-UTR-P-littoralis_Contig7:823332..8234361680791446.6922696-UTR-P-littoralis_Contig7:823332..823436Pylaiella littoralis U1_48UTRP-littoralis_Contig7 823333..823436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791446.7143502-CDS-P-littoralis_Contig7:823436..8234691680791446.7143502-CDS-P-littoralis_Contig7:823436..823469Pylaiella littoralis U1_48CDSP-littoralis_Contig7 823437..823469 -
1680791446.7279372-CDS-P-littoralis_Contig7:823784..8239141680791446.7279372-CDS-P-littoralis_Contig7:823784..823914Pylaiella littoralis U1_48CDSP-littoralis_Contig7 823785..823914 -
1680791446.736853-CDS-P-littoralis_Contig7:825455..8255261680791446.736853-CDS-P-littoralis_Contig7:825455..825526Pylaiella littoralis U1_48CDSP-littoralis_Contig7 825456..825526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.209.3prot_P-littoralis_Contig7.209.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 823437..825526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.209.3

>prot_P-littoralis_Contig7.209.3 ID=prot_P-littoralis_Contig7.209.3|Name=mRNA_P-littoralis_Contig7.209.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
GERGRLRQRSETKDTWTQGFLSTVSCDGGGHAAVPKGGSGGLSKCRPMPV
RGSGDRAKGDSLSKKFKGLGRGAKSGE*
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mRNA from alignment at P-littoralis_Contig7:822281..825526-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.209.3 ID=mRNA_P-littoralis_Contig7.209.3|Name=mRNA_P-littoralis_Contig7.209.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=3246bp|location=Sequence derived from alignment at P-littoralis_Contig7:822281..825526- (Pylaiella littoralis U1_48)
GGAGAGAGAGGGCGGCTTCGTCAAAGGTCAGAAACAAAGGACACGTGGAC
CCAAGGCTTCCTATCTACGGTGTGAGTGTGGCGCATCTGCACCTCGGTAT
AAATATTTTTTTGTAAAAAAGAAGCAGAGAACGGAACGATCTTTTGCGCA
AGACAAGAATGAACGAAGTTGTGGCGTTCACGGAAGACTGACTGCGACAC
CATCGAGTAATACAGCGTAGTGCCGCTTATTGTTCGAGGGATGGAGCTTA
TGAAAGACGAAGTCTGAACCAGTACCACTCATGTATCTGTCCCAGTACAC
AAAAGCATATCATATGATTTTCAATACTGCTGTAGTACTACTGCTGTCTC
CATTGTAATGTGAGCGTCGCAACGGCTGTTCTTCATGCCCTTCTTTTTTT
TTCAATAGGATTACAGAGCTCATCTTGGGTTGATTGGATTCGTTTCTAAA
AGGTGCTGGCGCCTCGCCTGCTGCTGAATTGCTGTATAATCCTGTTTGGA
TATCGTTTCCCACGACAGCAGATTACCAACGTTGGGTGTGTGCATGCCGT
CATCCCGCATCTATATCGTGGGCTCCACAGAATGGTCGTCTCTCGATATG
CTGTGAGTCGGGCACACCAACAGACGAAAGGACGTTACAAGTTCCCTCTG
GCAGTGTTTTTTCACCTCCCTTCTGTGCTTGAATCATTTCATCAAAATTC
GATTCCCTTTTTTAGTTTTATTGCGAGCGGGGTTCGACCGTCCCATGTTT
TCCCTTGTCGACTGTCGACTCTTTGAACCTCCTATTTTCGAGTCGTCGTA
TTTGTTTACCCGTGGAAGTATTTCGCCCCACCTTATGATACTCAGCCATA
TGATATTACTGTAGTTGTACGAAAGTACCATTTCATACAACTATGGAACG
GGGGTGTTCCAGGTTCGGCGCTGCAGGCGATTCTCTTCGGTAGGCGTGTT
GCGTGGGGCACACGCGGGGCTCACCTCTCACGACGACGAGAGGGAGGTAC
GAAAGAGAGTCGGGTTGTCGTGAGGAAAGGTAACAGCAGCACACGAGGGA
ACTTCCAGGGCAATCTGTGATTGCGCAAGAGATGATGTCCAACCCGGGAC
TGCTCCTTGACGTTCTTACAGCATGGGCATTTCTCCTCACGGGTATTCCA
TACGGGTAAAATCAGCAAATAATCCCAGTTCACCGGGAGGCGAATGCACG
ACCAAACATAATGAGAATCAACACGACAAAACAACAACAACAACAACAAC
AATAACAACAACAACAATAACAACAACACAGGCACACAAATACACACGCA
CGTACACAGGAAGGTTGCAGGCTCTTACCCTACTGTAGCGAGGAAGAGGG
ATGGGGGATGGGGCTCTATAAGGGTATCGTTGGTGCAGAAGGTAAACACA
CACCAGTCCATGAGACATTGGAAATCCCAGGAAGTGCATAGCATTTTGGT
CCCCTCGTGTCCACCCTCCTCTATCTCGTGGCCTTCCTTCATATTGATAT
CACCAGTCGAACTGCCGTGCTTTATAGCGTTAGACAGATGACATCTGTAT
TTTTCATGCTGGGAGCTTTTCGTTACAAAACTACTGCACGCCAACTGCTG
TACGTACACCAGCAGTTGTGACGGGGGCGGGCATGCGGCCGTACCGAAAG
GTGGCTCTGGCGGCTTGTCTAAATGTAGGCCGATGCCGGTCCGCGGAAGC
GGCGACCGGGCGAAGGGAGACAGCTTGTCGAAGAAGTTCAAGGTACTCAA
CAGGACCAGGGCGATCGTTCTTTTTAGCGTACTACAGTAGCGAAAAGGCA
TCTCGCAGGGTATTCACACGACCGTCAGTGTTTTGGTGACTGTCGAAGGC
AAGCAAGTAGCTCCGCCTCTCGGTGGTCGTTCTTTGTGTTTTTGTTTTTT
CTGTGACCAAACATTTGCAAGAACGACGCGATCATAGTCAAACTCAAAAT
GAAGACACCATTAATGTTGTTGTCGTTGTCGCCGGCGCACCCCACGAAAA
CTGTCTCCCCAACGTACTCGACGAACGCAATGGCGAACGATCAACTTACC
GCTACAGGGACTAGGAAGAGGGGCAAAGTCCGGAGAGTGAACGCGCCCAC
ATCGCCGATCTCTCCGCGAAGCTCGAGCAAGGTGTCGAAGCTGGGCCGAC
TGGACCGGGAGGTGGCAAGCTCCGACTCCGACTTCAGCCAAAAGGTGCAG
GGAGTGGGGAGTAGGGATGGGGGGAGAGGCACAGCCACGTACACTGGTTG
CGGTTCAACTCTACAACAGCAAATCTTACCATAAATAAACTGTTCCTCCA
AGATGCCTTTCCTAAATCTTCGTTTCCTGACTCCACACTGATGTTGTAGG
TTGCCTTGAAATCTCAATCACATCACGTTGCCCCGGTTTCTGTATTGGTG
TCCGTTCGAGAAGATGGAACACGGGGTGGTAGTGACAAAGTACGATACGA
AGGGCGCAGCGACCCAGCGGGTGCTGTTTCTGGACGTTGCGTCGATATCG
GTGGCGTGGCGCGACCTCGATGCCCGCCCTTCTTCTCCGGGACACGGTAC
GCCCGGACACCGTCGGTCGCTATCGTTCACTAGTTTGCTCAAGGGGAAGA
AGGGTGCGCTGGAACTTTTGCAACTCATGGATGTACGGTATAGACAGGCC
AGTTTTTGGTTTCGTAGTTGGTTGTACATTTTGGAGTTCTACTGCTGCTG
AAGTTTAACTTGTTTCTGCCCTTGTCTTGTCTACACTCGTTGGAGTCCCA
CGGTGTATAGTTTGTTTCTGATGCCTTGTGGTCCGTCCTCTAGGCGTGGT
TTGTTGTGCTCTTGATACTATTTGGAGTCCCGACGGAGTGTATGTGTTGT
GTTGTTATGGATGCTCTTGTTGTGCTTTGTCTTGGCTATGGCGGTGACCG
CTTGGGCGTCGGTTTTGGACTGGGACAACAATCTTACTTGAGACTTCGAC
AACTCCAAAGGAGGATAGCTCAGAGCGGCGTTTCCTTCTGGAAATAATCT
TCATTTGTTCAGTCTGTCGGGTTGAGGGCATTCGAACATCAGAGCTATGC
CTTAAATAGGAACAGGACCGGGCGTTTGCTTTGAGACCGCGATGGAAGGC
CGCAAGAAATTTGGACCCCCCTCCCCTCGCTCCTGCACCACGCATCGCTG
GACCGGAGCACACACATGTACATTGTTGACGCCCAACTACTGCGTCGACT
TACTCACAACGAAGGTTGTGGGCGGCGACGATCCCGACCCAACGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:822281..825526-

>mRNA_P-littoralis_Contig7.209.3 ID=mRNA_P-littoralis_Contig7.209.3|Name=mRNA_P-littoralis_Contig7.209.3|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig7:822281..825526- (Pylaiella littoralis U1_48)
GGAGAGAGAGGGCGGCTTCGTCAAAGGTCAGAAACAAAGGACACGTGGAC
CCAAGGCTTCCTATCTACGGTCAGTTGTGACGGGGGCGGGCATGCGGCCG
TACCGAAAGGTGGCTCTGGCGGCTTGTCTAAATGTAGGCCGATGCCGGTC
CGCGGAAGCGGCGACCGGGCGAAGGGAGACAGCTTGTCGAAGAAGTTCAA
GGGACTAGGAAGAGGGGCAAAGTCCGGAGAGTGA
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