mRNA_P-littoralis_Contig7.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.3.1
Unique NamemRNA_P-littoralis_Contig7.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:33255..34207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size264
Hectar predicted targeting categorymitochondrion
Exons2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791446.4442291-CDS-P-littoralis_Contig7:33254..332771680791446.4442291-CDS-P-littoralis_Contig7:33254..33277Pylaiella littoralis U1_48CDSP-littoralis_Contig7 33255..33277 +
1680791446.455452-CDS-P-littoralis_Contig7:33967..342051680791446.455452-CDS-P-littoralis_Contig7:33967..34205Pylaiella littoralis U1_48CDSP-littoralis_Contig7 33968..34205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.3.1prot_P-littoralis_Contig7.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 33255..34205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.3.1

>prot_P-littoralis_Contig7.3.1 ID=prot_P-littoralis_Contig7.3.1|Name=mRNA_P-littoralis_Contig7.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
WILRWLTGCTLRAVWPTSTVSSRKNRSRCVRAHFSEKKNAAAPPSAPRAG
YRAPAGANFFFTVVIQSASFSRQNRATILTTEQGFFV
back to top

mRNA from alignment at P-littoralis_Contig7:33255..34207+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.3.1 ID=mRNA_P-littoralis_Contig7.3.1|Name=mRNA_P-littoralis_Contig7.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=953bp|location=Sequence derived from alignment at P-littoralis_Contig7:33255..34207+ (Pylaiella littoralis U1_48)
TGGATTCTCCGCTGGCTGACGGGGTGCGTCGTTCTTTGCCTTTTTTTCTT
GTTTTTCCTGTTTGGTTCATGCAAACAAAACAACACATAAGAGATTTGAT
TATTTATTTTTTTGGTCTTGCGGCCCCCAGCTCTCAATTTTGTGTTGTTG
TTTTTTGCTGACTTCGATCATTCGTGCTCCGCTGCAACACAAAGCACGCA
TGAGAAAAGTAGTCGAAAGGTCCGTGCATTGTTAGATATTCACTTCACCA
CTATGCTCATGATGGACATTTAGCGGCTGACTACAAAGCACAGACAGTCG
TGAATCTCGAAATATATTATCCGACCACCCCCAGAACATACACACCGACC
CGGTCTCCCTTGTCTTTCGCCTCCCCACGCTCGTATTTTTTAATGCGAAG
CATGATCGTCACGTGAGAGTGGGCGACGCGTCCGGCGTGGCGTACACACC
ACGACACACGCACACACGAAGAAATACTGACCAGAAAATATATACGGCAA
GAAAAACGGTGTAACAACTTTCATATCCTGTTACATATTTACGCAGCAGC
AGTCCACAAGTGCTTTGTAGGCAGGCACAAAAAAGAACCACGCGCACGCA
TTCAGCACCAAAGAGAGATGATACAGAGGCACTTCGTACAAAACTAACGT
CTGCCTTTCGTCCCTATATACCGCCCGCAAAACGAATGATGGTCTCATCT
GCCCCCACTGCAGATGTACACTCCGGGCAGTATGGCCAACTTCGACCGTG
TCTTCGAGGAAGAACCGCAGCAGGTGCGTGCGTGCGCATTTTTCTGAAAA
AAAAAATGCGGCGGCGCCACCATCGGCCCCTCGGGCTGGTTATAGGGCCC
CCGCCGGAGCCAATTTTTTTTTTACCGTAGTAATCCAGTCGGCTTCATTT
TCCCGTCAAAATCGGGCAACAATATTGACTACCGAACAGGGGTTTTTCGT
CGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig7:33255..34207+

>mRNA_P-littoralis_Contig7.3.1 ID=mRNA_P-littoralis_Contig7.3.1|Name=mRNA_P-littoralis_Contig7.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig7:33255..34207+ (Pylaiella littoralis U1_48)
TGGATTCTCCGCTGGCTGACGGGATGTACACTCCGGGCAGTATGGCCAAC
TTCGACCGTGTCTTCGAGGAAGAACCGCAGCAGGTGCGTGCGTGCGCATT
TTTCTGAAAAAAAAAATGCGGCGGCGCCACCATCGGCCCCTCGGGCTGGT
TATAGGGCCCCCGCCGGAGCCAATTTTTTTTTTACCGTAGTAATCCAGTC
GGCTTCATTTTCCCGTCAAAATCGGGCAACAATATTGACTACCGAACAGG
GGTTTTTCGTC
back to top