mRNA_P-littoralis_Contig699.18.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig699.18.2
Unique NamemRNA_P-littoralis_Contig699.18.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig699.18.2 vs. uniprot
Match: D7FXE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE8_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 9.580e-47
Identity = 91/147 (61.90%), Postives = 109/147 (74.15%), Query Frame = 3 
Query:  288 MMGVLKVVLPVLGMVQIVLAFLYADPGFQTMMFELLFGGNTRGADRIACK-VLMELLCPLFLGMAFLNICSWTMGSTMRPKVAVSDLISHAGVLVVHYRHSGSFPSNSIPVWVCTVAILAVVVGLVLHQLEPGLLTEDKAIKTAART 725
            M+G LKVVLPVLG+ QIVLA LYADPGFQ M+ +LL G N++  +  AC  V+++ LCPL+LGMA LNI SW MGS +RPKVA++++ S AGVL  H R   S   NS PVWV    ++AVV GLVLHQLEPGLLTEDKA  T ART
Sbjct:    1 MVGALKVVLPVLGVAQIVLASLYADPGFQKMIVKLLLGENSKAGEGAACSGVILQQLCPLYLGMAALNIWSWGMGSEIRPKVALANIFSMAGVLYAHSRAPNSSMFNSAPVWVSVAGLVAVVAGLVLHQLEPGLLTEDKASTTKART 147
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BLAST of mRNA_P-littoralis_Contig699.18.2 vs. uniprot
Match: A0A836CDN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.350e-9
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 3 
Query:  291 MGVLKVVLPVLGMVQIVLAFL-YADPG----FQTMMFELLFGGNTRGADRIACKVLMELLCPLFLGMAFLNICSWTMGSTMRPKVAVSDLISHAGVLV-VHYRHSGSFPSNSIPVWVCTVAILAVVVGLVLHQLEPGLLTEDK 701
            MG+LKVVLPV+G++ +  AFL + +P       ++  E+    +T          L+ +L   F  +  L++ S+ MGS  R KV V++LI HA   V  H+   G+  +   P+  C   +    V LVLH LEPGL T+DK
Sbjct:    1 MGLLKVVLPVVGLLHLYAAFLAFTEPAKVLDLLSISHEVSLSAST--------VYLVHVLSGAFASLGVLSVLSYIMGSVSRFKVGVANLIFHALPAVDAHFFTKGATTALQTPLVACAGVLT---VSLVLHLLEPGLFTQDK 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig699.18.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXE8_ECTSI9.580e-4761.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CDN8_9STRA3.350e-934.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig699contigP-littoralis_Contig699:59446..65419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1865
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002940.1
Cds size465
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig699.18.2prot_P-littoralis_Contig699.18.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig699 60559..64448 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791445.8486123-UTR-P-littoralis_Contig699:59445..605581680791445.8486123-UTR-P-littoralis_Contig699:59445..60558Pylaiella littoralis U1_48UTRP-littoralis_Contig699 59446..60558 -
1680791445.9206321-UTR-P-littoralis_Contig699:64448..645841680791445.9206321-UTR-P-littoralis_Contig699:64448..64584Pylaiella littoralis U1_48UTRP-littoralis_Contig699 64449..64584 -
1680791445.9316854-UTR-P-littoralis_Contig699:65268..654191680791445.9316854-UTR-P-littoralis_Contig699:65268..65419Pylaiella littoralis U1_48UTRP-littoralis_Contig699 65269..65419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791445.8605983-CDS-P-littoralis_Contig699:60558..606391680791445.8605983-CDS-P-littoralis_Contig699:60558..60639Pylaiella littoralis U1_48CDSP-littoralis_Contig699 60559..60639 -
1680791445.8824756-CDS-P-littoralis_Contig699:61176..613201680791445.8824756-CDS-P-littoralis_Contig699:61176..61320Pylaiella littoralis U1_48CDSP-littoralis_Contig699 61177..61320 -
1680791445.894844-CDS-P-littoralis_Contig699:62032..621791680791445.894844-CDS-P-littoralis_Contig699:62032..62179Pylaiella littoralis U1_48CDSP-littoralis_Contig699 62033..62179 -
1680791445.9052587-CDS-P-littoralis_Contig699:64355..644481680791445.9052587-CDS-P-littoralis_Contig699:64355..64448Pylaiella littoralis U1_48CDSP-littoralis_Contig699 64356..64448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig699.18.2

>prot_P-littoralis_Contig699.18.2 ID=prot_P-littoralis_Contig699.18.2|Name=mRNA_P-littoralis_Contig699.18.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MMGVLKVVLPVLGMVQIVLAFLYADPGFQTMMFELLFGGNTRGADRIACK
VLMELLCPLFLGMAFLNICSWTMGSTMRPKVAVSDLISHAGVLVVHYRHS
GSFPSNSIPVWVCTVAILAVVVGLVLHQLEPGLLTEDKAIKTAARTPKKS
NKYA*
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mRNA from alignment at P-littoralis_Contig699:59446..65419-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig699.18.2 ID=mRNA_P-littoralis_Contig699.18.2|Name=mRNA_P-littoralis_Contig699.18.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5974bp|location=Sequence derived from alignment at P-littoralis_Contig699:59446..65419- (Pylaiella littoralis U1_48)
GTCTACATTCCAAACGACTGTACGTTCCAAACCACTTACCCTCCTCGGCG
CCCCCGCCCAAAGATTTGAGAGGATAGAGCGGCGAGGTACGTCGACCTAC
GCCGCCACATACCAAGAGAGCCTGGGATTCAGAGGAGTTTGTTTGGCTCA
GGTGCGGTCGTCCTTGTCATCCATTTGGTTCGTTCGGTTTTGTACCATGC
CACATGCAAAGGTCCTCATCCCAATGGCTGACATTTTGAATTTCCCCGCC
AGTAGATCTTGGGCGTTGGAAATTAGATGTACGTTGTACAGCCGTGTTGC
ACAATCCATGTCCCTTCGCGCATGTTGTTCCCAACTCCACCCACGCGGGT
GCGACGCTACCGCCGAAAGGGTAGCTTAACGTCTCATTCGAGCGGGTCAT
TCCTGGTCTGTGCTAAAAACTCTGCATGTTGAGTTTGACAGCAACGCTAT
CATGTCGATCCTCAATACTCGTAGCAGTATGTAGCAGAGTTTCTTCGAGA
AGACCAACAACGCAACATGAGCGAAGAAGCAGCAGCAGAACACCACAAAG
ACATGTCACACCGACAACAACGTATCTCACCAAGGTACCTGTGGTTTACG
ATAGTACAGGCGATCTTGTAATATTCCTGCCCGAACACAGACGACTTTTC
CTACCTCTCCAATATAAACGACCCCCCAGCACGTCCCTGACATCAGTATT
CGGTAGTATTCGCTCAGAGAGTTCAAGTTCAACTTCCGTCTTTTTTACAC
TTCGAAGTAGCATTCTCCACCTTAGCCTGCTCTCCCGCGTGCTGGCCGCT
CCTCGCTTGGCGTCTTCGCTCGGTGTCCATTGCAGCTTTTCCAAAGTTCA
GCCGAAGTAACAACAGCAAGGGCTTGGCGAGGTCATCGAGGCCCCCTCAA
GATCAAACTATACCTACGTCGGCAGCAGCGGTGGGCAGCAGGAGCAGAGG
CACGAGTGCGGGGGCGTGAAGATGATGGGAGTGCTGAAAGTGGTGCTGCC
GGTGCTGGGAATGGTGCAGATCGTGCTAGCCTTCCTCTACGCCGACCCTG
GCTTTCAGACAATGGTGAGTGTCTCATCTTCTCTCCTTGCCGTCGTCAAT
GAAATTGCTCAACAAAATAACCTGGGGTGGGTACAGACGGCGGTGCACCA
GGCGTCCTTCTGGTGGTGTTATTCCCCCGCAGGCATGTTAAAAATACACC
AATTCTGCTCCGAACGGAAGCCGATAACGAGGGTGTGGCCTGAGCCGCGC
GGGTAGAGAGGCGCCGCGAGAGTGCCTCCTCCTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTTTGCTGTGAACGTTATAGTGTACCAGGTAC
TTCGTAAGTTTTTGTTCTGTAATTTGTGGCCTCGATGCCTACTTTTTTGC
GAACGTAGCGATATGAACCTCCGCAGAGATACTACAACGAATGAGCGCTG
CTTTTACACTGCATTTCAAAGTTTCTCCTTTTACGTTTTTTTAAGAGCCA
ATACATTGGCGCGTTTCTTTCGATTTCCCTCCAATAATGATACTTCGAGT
ATACGAAGAGTATTTACGAGGTAGTATCTCGTCCAAAAAAGGTGAGGACC
ATACTGTTTCTTAAACGTTGTTAGTTTCCTTCCTTCCGAAAACCATTTGA
GGTAGAATCGTTTCACAATGCCGCCGCCGCTTCGTCTGCGCCACGGGAAA
CAAACGAAGAAGTCGTTCTGGGTGTATGGAAGTGTAAAGTTTGAAGACAA
TTAGCAAGGCCCCTTCCAGCCACAACTGCCACGCCCGCACAAACAGACAC
AGACAAGGACACAAAGACACAGACAAAGACACACACACTTCGCTGCCTTG
GCAAGGTCTTCTGTTAAGCATGACCCAAAGCGAGTCAGGGGGTTTCCCGC
GGATGTCAGGCCGAACTGACCCTCGAGGAGTGATACCCTCTTGCTGCTGG
GCTGCTGTGGTTGAATGCCTACGCCGTGGCGGTAGAGTTGGGTTATTTTT
GGTGCGCCAGATGCACATGTGCGGATTCGCGGGCCTCTTTTGATATACTG
GTATAATACTTCGAAGTACTTCGAGTGTATCGAAATCATTTGTGTGCGGA
GACAGGCGGCACCATAAAGCAGAAAATACGGCACAGTCTTGGATTAACAG
ATGGACTGCGCCGTCCAGCAGCCGGATTCGCAGCCAAAGCCGCAGGGAGA
AGAGAGGCGACGAACGGGCGACTTGCACCTCAAGTGTAGAAAGGAGCGAA
GGGAAATTGCTGCAAAGGAACAACAGAGCATGTGTCCCAGAGTGGCAGTG
CTGGGGGTGGCCTAGTGTGACGCCAGTTGCCAAGCGGTACGACAGTAGTG
TTGTGCTACGGGTGGCCTTGGAAATGTCAATAGCGAAGTGGGGCCAGAAT
GGTGGATGAGCTGGAGGTAATCACGGGCGACAGCACCAGCACGAGGACAG
CATCGAGACCGTCCTCGACATCAGTTTTACAACCTTTTGCGTTGTTTTTC
TTTCTCGGGGGTCTGTCGCGGGGTTTGAATCACGTCATCTGTTTTTTTGT
GGAGAGAAGAAGAGATGCGACAGAACTGCCCACGTGGGGCCCTTTGTTGT
GCAACGGCTCTTCCGCAATGTCAATGGCGTGATTTTACCGTGCCCTTCGT
AGACGGCTCGGAAAAGATCGTCGATTGTCGACTTGCAGGTTGGTGGCTTT
GCTCTCGTCGATTGATTGGTGCTTTTTTCGCTGCATTGTCTGCAGGTCTC
GTCACTCTGACAGCACTCGAGACAAAATCATGATGTATTTTCTACGTTGT
TCTGTTTTTTTGCCGACCATACCGGGCCTAGTGTACGTTGCAGGCAGCAC
TTCAGACAGCAATGCGGAAGTCGGCAGCCACAAGTGTTTGTTAGTGGGGC
GGGGGGAGACTGGAGGCGATGTTGTAGTCGAATGAACACCTGCGCGATGA
TGGTGTTCAGTTTGTTGCACACCACGAAGCGAGAAGGCGTGCCTTCGTTT
GGCCTATCGTGCACCCTTCCTTCTACTGGTTGTTGGTAATTCAAAGCTTT
AATGGATCAACACTTTTGTCACGACGGGCTAGATCTCGGAGATGAGTTCA
CGTGAGAGCCAACGAAAGACAACATGCACCCGAATACCACAACGGATGAC
TCGTGTTACCAAAATTCCGCATGTAGGACTGTCTGTCTTTGCCCACTTGG
CAATGTTGTGCCGCTCCTCGCCACTCCGATTTCCGTGCAGATGTTCGAGC
TGCTGTTTGGAGGAAATACAAGGGGGGCGGACAGGATCGCTTGCAAGGTG
CTTATGGAACTTCTGTGCCCGCTGTTTCTCGGCATGGCGTTCCTGAACAT
CTGCAGCTGGACCATGGGCAGCACAATGAGGCCGAAGGTGAAAAAATCAG
GAGTGATTTTTCGAATTTAAACACAATCAAGTACTTAGGAGTACTAAGGA
GAGTGTACGCAGAGATGCATAGCGAATGCAAAGACGGAAGGCACGACACA
ACGTTTGCTGTCAAGATACACTCCCGGAACGCAGGAAGGTGTGTCTGATC
CATGTCCCACTTTTTTCGCAACAATTCAAACTCGTTTCCGAAGGTGTTTT
GGGGGAGCACACTCAACGAATCGCAACTCGTGAAATACATCGTTGGAAAT
CCCTATTCCAGACAGGTTGAGCCATCGGAGCATATTTAAACGTTAGACGA
TAATCACATGTTTAAGAAAGGTTGGTTGAGACCTAGAGCTCGGGAGAGGG
TTGGTTATCCCTCGCCGAGAGCCAACTTTCTGTCGACGCCGAAAGAGTAG
CATCCATTTGTACATACGAGCGAAATTGAGGAAGCTGCTGTACAGCACTA
AAAAGCGCGAAGATTTTTAGCTAAAGATTGAAATCGATGGACCATCAAGA
CATTGTCGGACTCGAACAAATTGAAACAATACCCAGAAACTTCTTTTTTT
TCATTTTTACGAGCTGACATGCTCCAATGTTTTCACCGATATTTCAGAAA
ACAATACCCGACCACCATAAGGGCAGCTTGTTTCAAAAACTAGCACTGGT
TATTGCTCCGTTTTTGTGTCATGCTGTCTTAAACGATTATTTTGGCCAGG
TGGCGGTGTCCGACTTGATTTCCCACGCGGGTGTGCTTGTTGTGCACTAC
CGCCACTCCGGCTCTTTCCCATCCAACTCTATCCCTGTGTGGGTGTGCAC
GGTGGCCATACTCGCCGTGGTGGTCGGTCTCGTGCTGCACCAGGTGCGTG
TGGGTTTTCTTGTGGCACGTTTGGTCATCGCAAGGTATGGTATCGCTGTC
TTTGCGTCGCATATGGTGCGATCTGCTTTCTCATCGTACGGCGGTGTACG
CGGTCTACCTGCACGGCATACATACACGCCTTTCTCGCACGGCGTACTGT
AGTACGTTGCTAAATTTCGCGGTATGCTCTGCGTGCATGGCGCACGTGAT
TCGAGCGGATTATAATGCCATTTGAGCTTTCCCCCCCCCGCCTTTCAGGC
CAAGCGGGTGTGTCTGCCATGAAAAATGCAATCCACGGTTTTATGTTTTA
CATAAAGGAGGCATTTTGGGGCAATTTCGCAATGTTGTCATTGACGCAAA
AAAGCTCGTTCTTTTTTGCGTAATCCCTGTGTTTGATACAGCTGCATGTG
ACATCTTCTCGACACCCACAGCAATAACTTCGGGGGACTAAATTATGTTA
CCCAGAACCTGATTCCTGAGCGTAGGAATCTTTTTGTCGATGCTATGATA
CCTCGATTTTTTATTTGTTTGCACGGGCAGCTTGAGCCGGGCCTGCTGAC
AGAAGACAAGGCCATCAAGACAGCCGCCAGGACCCCGAAGAAGTCCAACA
AGTATGCCTGAATGCGCCGATTTCTATTATGGTATGATATGCCAAGACCG
ACAACTTCACATGACCACACCAAGAATTGCAAGCCCAAACGAGCTACCCA
CTTGACCCACGAAAACAGGTTAACTGGAAAGACGAGTCAAGCTCAGAAAT
CACGCCCCCAGCTTAACCCACAGCAGTCATGGCAAATGGTCTTTGTAGCA
CAAGAGCTTATTGGATTGATGAATTGACGGCAAATTATAGTGTAACATGT
GTAAATCTGTGCTTTTCAGCTTCCGCTGAGAGTGCTCTGCGCCGGTTTCA
GTAGGTTTTACTTGCGAGTGACTGCTTTGTGCGTTAAGCTTTCTGTCGGT
CGTCTACCTTGGTGTAGTCGTTTCTGCCGCGCAGGATTTAGTTCTTCAAG
ACCTGAGAGTAGTATATAGTGTAGTCTAAATTATATTTCTTTGCTTTTCG
GATACGTGCCAGGTGATGGTTGTTTAACGCAGGTCATACAGCGTACACGG
TACGTTTTTGGAAGCTTGTAGCCTGTTGTAGGACGTGTCACCGGACTTCT
GCATGCTGCTGAATTGGGCACCGTAGGACACCCCTGCCTCTTGTAGTGAT
TGTGCTTGGGGGCTACGTATGCATTGTACGTAATGTTTTCTACCGACTTT
TTTATTTTTGCATGTGTCGTGTTGTATACTGTGTATAAATGTGATACACT
GTACAGGACTTTACACACGCAGTACCTGTAGACTGCTGTTTGGTTGTTCC
TCGCAACGTTTCCGGTTCTTTGCTTGGAGATGGTTTGGCTGGTGTTTCGT
ACTTTCTTTGCATGGTGCAAGCGTGTTGTGAAACGAGAAACCATGTGACT
CCCCTGAGATGCGAGAAGGATGTGTGAACTGGAACGAGGGGTTTCAAACC
AGCTGTCGACAACTACTGCTCGGGTAAAAGGGCCATATGCTCGTGGCAGT
CGATGTCCAACCAGCACAAATGACAAACGCTCGGGGGAACTCGCGACTGT
TTATCGACCAGATCGAGAGCATTGGTTCGCAGAGCCATACTAAACATCAT
GTGGTCCACAGCTAGCTCCACAGCTAGCTGTGGCAGCAAACAAAGAAATG
AGTATTGGAAAGATTATTTTTTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig699:59446..65419-

>mRNA_P-littoralis_Contig699.18.2 ID=mRNA_P-littoralis_Contig699.18.2|Name=mRNA_P-littoralis_Contig699.18.2|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig699:59446..65419- (Pylaiella littoralis U1_48)
ATGATGGGAGTGCTGAAAGTGGTGCTGCCGGTGCTGGGAATGGTGCAGAT
CGTGCTAGCCTTCCTCTACGCCGACCCTGGCTTTCAGACAATGATGTTCG
AGCTGCTGTTTGGAGGAAATACAAGGGGGGCGGACAGGATCGCTTGCAAG
GTGCTTATGGAACTTCTGTGCCCGCTGTTTCTCGGCATGGCGTTCCTGAA
CATCTGCAGCTGGACCATGGGCAGCACAATGAGGCCGAAGGTGGCGGTGT
CCGACTTGATTTCCCACGCGGGTGTGCTTGTTGTGCACTACCGCCACTCC
GGCTCTTTCCCATCCAACTCTATCCCTGTGTGGGTGTGCACGGTGGCCAT
ACTCGCCGTGGTGGTCGGTCTCGTGCTGCACCAGCTTGAGCCGGGCCTGC
TGACAGAAGACAAGGCCATCAAGACAGCCGCCAGGACCCCGAAGAAGTCC
AACAAGTATGCCTGA
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