mRNA_P-littoralis_Contig699.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig699.3.1
Unique NamemRNA_P-littoralis_Contig699.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig699.3.1 vs. uniprot
Match: D7FXF6_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF6_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.110e-38
Identity = 126/309 (40.78%), Postives = 164/309 (53.07%), Query Frame = 3 
Query:  981 PTLPACTGTSMADPEGRATSASVSAESGALPAPPELFMPIARRPETLSADTDGTDADRDAGLGEVSPVVYPPKRMRDLLEVKASNPGGKRDDSARSGEGPVSATANATTTKGSAGLGVFCKRAIRAGDVIFEEEALLKVSKDAVDCKVWDVVSAVACKYQRASVFAMDLLQVVAFARAPPSVQARVLKLFAPEEAAFPLVRRQAWNDALDMLHRHGLLAASPAAGGRESA-----GGDAGRSQESGAQSGGGRGPSRPPLGAERRSMLTKVLMICESNIFGEPEDEEDGTRVLFELTTRMNHSCLPNCG 1892
            PT PA   + + D +    +A+ +A +   P  P +     R  +  S    GTD+D  + +  +SP      RMR  +EVKAS  G     SA +                  GLGVFCK  ++ GDV+FEEEALL+VSK+AV  + W+ V+A     +   V AMDLLQVVAF  APPSVQ RVL+LFAP+    P  R  A    LD L         PAA           G  AGR Q++G++  GG       +G +RRS+L KVLMIC++NIFGE  +EE+G R LF L  R+NHSCLPNC 
Sbjct:  163 PTPPATALSGVGDTQPDVATAAAAAAAAIYPKTPRVKADGDRDDDFYS----GTDSDDPSTV--LSPTTA--ARMRCPVEVKASRTG----RSATAXXXXXXXXXXXXXXXXXXGLGVFCKAGLKVGDVVFEEEALLRVSKEAVGRRPWEAVAAEGRWSKSWGVSAMDLLQVVAFEGAPPSVQERVLQLFAPDPEGVPQGRLHALEFFLDKLWTAMGALRPPAASSSSCVAAAANGKGAGRLQDAGSR--GGDXXXXXXIGRKRRSLLMKVLMICDANIFGEGANEENGPRSLFWLGCRINHSCLPNCS 457
[Close]
BLAST of mRNA_P-littoralis_Contig699.3.1 vs. uniprot
Match: A0A6H5L4J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.290e-21
Identity = 107/329 (32.52%), Postives = 140/329 (42.55%), Query Frame = 3 
Query:  957 AEDISGDSPTLPACTGTSMADPEGRATSASVSAESGALPAPPELFMPIARRPETLSADTDGTD-----ADRDAGLGEVSPVVYPPKRMRDLLEVKASNPGGKRDDSARSGEGPVSATANATTTKG--------------SAGLGVFCKRAIRAGDVIFEEEALLKVSKDAVDCKVWDVVSAVACKYQRASVFAMDLLQVVAFARAPPSVQARVLKLFAPEEAAFPLVRRQAWNDALDMLHRHGLLAASPAAGGRESAGGDAGRSQESGAQSGGGRGPSRPPLGAERRSMLTKVLMICESNIFGEPEDEEDGTRVLFELTTRMNHSCLPN 1886
            A+   G  PT PA   + + D +    +A+V    G +PA    +     +P  + AD DG D      D D     +SP      RMR  +EVKAS  G              SATAN   T+G               AGLGVFCK  ++ GDV+FEEEALL+VSK+ V  + W+VV+A+    +   V AMDLLQVVAF  APPSVQ RVL+L                                                           G S    G +RRS+L KVLMIC++NIFGE  +E +    +  L    +   LP+
Sbjct:   19 ADAAGGAEPTPPATAFSEVGDTKPDVAAAAVV---GVVPAAAATYP----KPLRVKADGDGDDDFYSGTDSDDPSAILSPTTA--ARMRCPVEVKASRAG-------------RSATAN---TRGVXXXXXXXXXXXXXXAGLGVFCKAGLKVGDVVFEEEALLRVSKEEVGRRPWEVVAALEFLSKSCGVSAMDLLQVVAFEGAPPSVQERVLQLIP---------------------------------------------------------GVSSVTAG-DRRSLLLKVLMICDANIFGEGANEGEERTSVTVLAGLQDKPQLPS 264
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig699.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXF6_ECTSI1.110e-3840.78SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L4J8_9PHAE7.290e-2132.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig699contigP-littoralis_Contig699:6556..14037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2483
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-07_003020.1
Cds size1521
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig699.3.1prot_P-littoralis_Contig699.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig699 7144..10129 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791444.9759345-UTR-P-littoralis_Contig699:6555..71431680791444.9759345-UTR-P-littoralis_Contig699:6555..7143Pylaiella littoralis U1_48UTRP-littoralis_Contig699 6556..7143 -
1680791445.0337956-UTR-P-littoralis_Contig699:10129..102931680791445.0337956-UTR-P-littoralis_Contig699:10129..10293Pylaiella littoralis U1_48UTRP-littoralis_Contig699 10130..10293 -
1680791445.044367-UTR-P-littoralis_Contig699:13827..140371680791445.044367-UTR-P-littoralis_Contig699:13827..14037Pylaiella littoralis U1_48UTRP-littoralis_Contig699 13828..14037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791444.9897742-CDS-P-littoralis_Contig699:7143..72141680791444.9897742-CDS-P-littoralis_Contig699:7143..7214Pylaiella littoralis U1_48CDSP-littoralis_Contig699 7144..7214 -
1680791445.001819-CDS-P-littoralis_Contig699:7710..79871680791445.001819-CDS-P-littoralis_Contig699:7710..7987Pylaiella littoralis U1_48CDSP-littoralis_Contig699 7711..7987 -
1680791445.0130665-CDS-P-littoralis_Contig699:8430..95451680791445.0130665-CDS-P-littoralis_Contig699:8430..9545Pylaiella littoralis U1_48CDSP-littoralis_Contig699 8431..9545 -
1680791445.0243313-CDS-P-littoralis_Contig699:10071..101291680791445.0243313-CDS-P-littoralis_Contig699:10071..10129Pylaiella littoralis U1_48CDSP-littoralis_Contig699 10072..10129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig699.3.1

>prot_P-littoralis_Contig699.3.1 ID=prot_P-littoralis_Contig699.3.1|Name=mRNA_P-littoralis_Contig699.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=507bp
MGTAVVSIDSDLQVAKVVRVDKDNELALLLVGGREGQPGRTRWSFLKDLP
PGLLGVGASESHNLPKEGKDESTWTSEKPQNVEYEEQQQQQQQQEMLRNG
VQGGQVGAERGRGAVPGQPVKGGGTSSALPRSSDGGGVTTNRTDQEQAGR
SIAVEDQQRTTRREKRRPYKEGSRDLAEQQPQQQQQSLPAERELAEDISG
DSPTLPACTGTSMADPEGRATSASVSAESGALPAPPELFMPIARRPETLS
ADTDGTDADRDAGLGEVSPVVYPPKRMRDLLEVKASNPGGKRDDSARSGE
GPVSATANATTTKGSAGLGVFCKRAIRAGDVIFEEEALLKVSKDAVDCKV
WDVVSAVACKYQRASVFAMDLLQVVAFARAPPSVQARVLKLFAPEEAAFP
LVRRQAWNDALDMLHRHGLLAASPAAGGRESAGGDAGRSQESGAQSGGGR
GPSRPPLGAERRSMLTKVLMICESNIFGEPEDEEDGTRVLFELTTRMNHS
CLPNCG*
back to top

mRNA from alignment at P-littoralis_Contig699:6556..14037-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig699.3.1 ID=mRNA_P-littoralis_Contig699.3.1|Name=mRNA_P-littoralis_Contig699.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7482bp|location=Sequence derived from alignment at P-littoralis_Contig699:6556..14037- (Pylaiella littoralis U1_48)
CCAAGACCAAGACCACCGGCCACTGGCACTATCCCCGACCTCAGCGTCCC
ACTGAGGTCAACTCCGATTCGGATCTACACGGAAGGATTCATTTTGCATC
ATACAGCAGTGGATGACACGGAACGAACTTTTGTTCTTACACTGCTGTCC
CAGAAGACCGAGACAGCAGCTCCATCAAGCGAGCGTGATTGCAGTGCACA
CAGGCACGGGGTGAGAGTCGTGTGTTTGTTGGGTCTGTGCATGTGTCACG
AGGAGTCACGGCGAGCATTTGTGGTGTTGCGTTTCAACGCACATCCCGCA
GTTGCCAGCTTGGCAAAACCGATCTTGCAGCGGGAGATCGGCTCCTCAGT
ACACGCAGTCAGTAGTTTCGACTAACAAGCTCATGCGAGTTTCGTTATCA
ATATTGTAGAGCCGTTTGAACCACACGCAAACAGCAGTACAGACGCGGCC
ACAACTTTTTTTTTTTTTAACTTTCAAAAACATCAATGTGTTCGCCTCTC
TCCAGACGAGGATCTGGAGCAGATATTGCATCGAACACAAAGAGTGAAAT
ACGTCTACCAGTGTTTCTATACTCAGCAACCAGTGTACCCGTTGCAGCTC
CCCTGAGGGTATCAGGCTACTTTTAAAAACTGGCAGCTAACAGCAGTTAC
TCGAAGTGTATCCCTTCTGGGACCAGGCCTTTTTTTTTCCCCTTCACGCG
AATCGCCCAGGTTCCAAATTAGAACCAGAATACAAGTAGACCACCCGCCC
GAGAACAAGAAATATATGTCTAGCAGAGATAGAAAAAGGAAAAAAGTAGT
CCAGGGTACATCCCACCACCTCATAGCCGGTCCCTGTGTAGCAAGGGCTC
GAAGCAGGCTGATTACCTCCCTGGAGAGTACAACAGTATTCCCGGTGGTC
GCAATCGAAATGCCGCGGCCAGCTTTCAGGCGTCGCGAGTGGACGGTTTT
CCAGCAATCGCGTTTCAGTGTAGATTGTACTCTGACCACGATAACAAGGC
GAACGTGATACTGTAACTAAATGGTCATATCTAAATCCCCACTGAAGCTC
CCGCCCGGCCTAGCAAATGCACATTTGGGATATGGGCCCCGTGGCATGTT
CGTTCCTTCTTAGAGCACAGCACGATACAGAGTCAGTATAACAAACCCAA
CACACCACACTACCAGCGAAACAGAGCGGTACGTATACGATAGGTACAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTACCCT
ATCTAGCAACCGCACGTCTTCCGACACGACGATCAATCGCGCAGCGGACA
CATCTTTGCTGCTCTTCCTTGTGTCGTGTGAGGATGTACTTGAAGTATGC
AGCGTCTGCTGTTGTTGTCGCTGTGTTGACCAGACAAAACTGCACCACAT
CGTCATGTCTCTCTGTGAATGATATTCTTCTACAGCAGTAAAACAACTGC
TATTCGTCGTTGTAATTACCGACACGGGAGGCGGAGGTAGGTATGATATG
TGATGTTGTTGTAGCACTGATATACATGGTATACACGTGGTGTACTCACT
ACTTGCTAGTGCTGTATTCGTCTCGGGCACCCACCCTGCCACACACAACG
AGCGGTGTTCGTTTGTCCTCTCTTGCCAGGGCCGTGTCTGGGTGCAGCCA
GAATGCTGTGCAACTCCCAACGTAACAATGTGTCCGGGAATATTTTGTTT
CCGTCCCCATCCCGAGGAGACCGGCCAAAGAAAACAAAAAAGAGGTGATT
GCTTTTTTTATATTATTGAATCCCCCATGTCACCCCGGTGGTCTAGTGGT
TCCCTCGTTAAACTGCTAGTTGCAAGGTCGCGGGTTCGATTCTCTCTGGG
AACGTTTCTTGCGGCTTTACAGTGGAAAGCGAATTACTCGTGAGTGAACA
GAGGGAAGGGATTGCTGTACCCGGTTCGCTCTATAAACCAAAGGCACGTA
CCGTAGGAGGAAGGTTTGGGCAATAAAACAAAATAAAAAACAAAAGGCTC
GTGTGTGACCTTCCTCCTGTGTGACCCCGGCACACACACTAGTAGTCACA
CAAGGGTTAAAAAGGGTCTTTATTATCGATTCGGCTCTTTCGCTCGTTCT
GTAAATTAAAAGCCCGAAACGAGGAACGGAAAATACCCCGTTTATTATCG
GCGTTGAGAGGGTGCTCGAGCATGGGAAAAACAATCAAACTATGCCTCAC
GCCATCAGACAGCAACTGAGCTTGAAGGCCTCCCAAGTCGCAATTGTTTC
GAAATGGAGGCGTACATGATACTGTCCATCGGTTCCGCTGTCTCGATACT
GTCCATCGGTTCCGCTGTCTCTTGGCAGTGGTCATAGCTTGTGCGCTGGC
CAAATAAGGGCAGCAAGGAGTGTGTTGTCGAAGTTGGTTCACAGTCCCGG
ACATGGTGTGTTTTGCGTCGGCATCACAAGCTGCACTTAACCCCACCAGA
CAGTAACAGAGCTTGAAGGCCGCCCAAGTCCTGATTACTTCAACATGGAG
GTACATGATGTTGGCCCTCGGTGCCGCTTCCTCTTCGAAGAGGTCATAGC
TTTTGTGCCGAACAAAGAAGGGTTGCGAGAAGGATGGGTGTGTTGGTGAG
GGGAAAAAAAATGCGGACAAAGCGGCGAATCAAGGTCGTGGGCATTTTCC
GACTCGTCCTGTTTGCGTTCTCTTCACCGATCTCCGGCCACACCTGCTCA
TATGCTCAAACCAAGGGTGGATTCGCTTGCCCGTGTGCTACTCTCGGGAG
CGCTGTTCTTGTTCCTGCCGTCTGTGCTGCTGTGGCTGCTGGTGGGTGGG
TTTAGGTGTGTTCGTTGGAAGCCTGAGAATTTCCCCCGATCCGTGAAAAT
GATCTTTCACGATTTTTTTGGTGACGTGTATTTCACCCGTTCGGGGGAGG
AATCGCAAGGAATCTTGTCTCCTCCACGTTTCGGGCTATTTTACCACGAA
ACAGAGGAAAGAGCCGCTTCGATGACAGATCCAGCCTCAAACGTTTCGAA
AAATAAGAATTTGGCCACAAGAACAGGTGCTCAATTAAAATCCTTCACTT
AAACCTGCCGGTATACAAATCTACATAGTCCCCATTTGGTTACACCAGAG
AGAAAATAAGGCTCGAACCTCGAGCAAAATAAGAGTTTCTTGAGTGGTGG
CCGTATCTGTAGTACGTATGACATGTGAGGTAAGATTATCTGGAGGGAAT
ATACTATGCTCAAGGGAATTACCACGCCCCATATCACTCGAGCTTTGGTA
CTCTGTATCTAGTTCTTGGAGACAGGTACGATATGCCCAATGCTGATTGT
TAGGTAAACTCATTTCCATTGATGCTGAGAAAAGCATGAACTCGAGGTGT
TTATGCATACGGAGTACTTCGTAGTATTTATCATACACACGATATCATAC
CAGGTACAGTATGCGATAATGGATTCGTCATCGAAGAATGGGTGATTTGA
GTCCGGGACCTCACAAACAAGCTTGTTCTCTCCAAGCTTCCGCCACGTGA
CATCCACTGCTGCCGTATCATACTTGCACTACGCAACGCCCGCACTAAAC
TCTCGCATGTTGTACTAAGATGACGTTGGCCAACTCCGAGTCGTACCCCC
GCGCTGTCATCTTCTATACTGCTGCTGCGCGCGTACCGCAGCAAAAATGC
GTTCCCGTTTTTCGGACGTCGTTTCTATTTGCTTGTATACCGATGTCGTC
CTGATGTTTTACCTTCCGTTCGTGTTTCCGGTGGTTTTGAGCAGGTGCCG
GGGTTACGTTAACACGAAGGACGGCTGTGAGTTCAGCACAATAAAAGGAG
GATTGAGGAAACTGGCGATAACTCGAGAACCGGATACACCTGGCTGCCGC
AGCGGCGGCGCGCTGCTGGCCTAGCCGCCGCAATCAAGCCGTTCACTGGT
TCATCGAGATGGGTACCGCAGTAGTAAGCATCGACTCGGACCTGCAAGTC
GCCAAGGTTGTGCGAGGTGAGCCAGGGTTTGCATCCATACCTGGGCGCTT
GAAGTATTCACCGCCGCAGCAGTGTCTGTGTGTGTTGTCATCCCATTTAT
TCTGGGCAGCAGTCTACACCTTTCGGTATGATGTGGGTGCTTCAGCCGGG
GTCACACAGAAGGAAAGTCACACACTAGCTTTTTTGCTTTTTATTTCGTT
TTATTGTCCACACCTTCCTCATGCGGTTTGTGCCTTTGATTTTTAATGCG
AGTCGGGAACAGCAATCCCTTCCCTCTGTTTACTCACGAGTATTTCGCTT
TCCACTGTCAAGTCGCAAGAAACACTCTCAGAGAGGATTGAACCCACGAC
CTTACAACTAGTAGGTTAAAGAGGGAACCACTAGACCACCGGGGCGACCG
GATTGATAGCAGTGCGGGGCCAAATACGGCAGCTCTCTGGATTGAAGCTA
CCTGTGTACACACGTATCATGATGAGCACTTCGTAACACAAAGGTTCCAA
CCCGTACCCATATCTCGCGACCTGATGCCATTATTTTCGCAGTTGACAAG
GACAACGAACTAGCGCTTCTGCTTGTGGGTGGTCGCGAAGGACAACCAGG
TCGCACTCGCTGGTCCTTTTTGAAGGACCTCCCCCCTGGCTTGCTCGGCG
TTGGGGCATCGGAGAGTCATAACCTACCCAAGGAGGGTAAGGATGAGAGC
ACGTGGACCTCGGAGAAGCCTCAAAATGTGGAGTACGAGGAGCAGCAGCA
GCAGCAGCAGCAGCAGGAGATGTTGCGAAATGGTGTCCAAGGAGGTCAAG
TGGGTGCGGAGAGGGGACGGGGAGCAGTGCCAGGACAACCGGTGAAAGGC
GGTGGAACAAGCTCGGCACTTCCACGTAGTAGTGACGGCGGGGGGGTGAC
GACGAACCGTACGGACCAGGAGCAGGCAGGGAGATCGATAGCTGTCGAAG
ACCAGCAGAGGACTACCCGGAGAGAAAAGCGGCGGCCCTACAAAGAGGGT
TCGAGGGACTTGGCCGAGCAGCAGCCGCAGCAGCAGCAGCAATCCCTCCC
AGCAGAGCGCGAGTTAGCGGAGGACATAAGCGGTGATTCGCCAACCTTGC
CAGCATGCACCGGCACCAGCATGGCAGACCCAGAAGGACGTGCCACTTCT
GCCTCTGTCTCGGCAGAGAGCGGTGCCCTACCCGCACCCCCCGAGCTTTT
CATGCCGATAGCGAGACGCCCAGAGACGCTATCGGCTGACACCGACGGCA
CGGATGCGGATAGGGACGCGGGTTTGGGGGAGGTCTCGCCGGTCGTTTAC
CCGCCCAAGCGCATGCGGGATCTCCTCGAGGTGAAGGCGAGCAACCCTGG
TGGCAAGCGAGACGACTCCGCTCGGAGCGGCGAGGGTCCCGTTTCCGCCA
CCGCCAACGCCACTACCACCAAGGGCTCGGCAGGCCTGGGCGTATTTTGC
AAGCGTGCGATCAGGGCGGGAGACGTCATCTTCGAGGAGGAGGCGCTGCT
GAAGGTTTCCAAGGACGCGGTGGACTGCAAGGTGTGGGATGTCGTCTCGG
CTGTGGCATGCAAATACCAACGTGCGAGCGTTTTCGCGATGGATTTGCTG
CAGGTGGTAGCCTTCGCCAGAGCCCCGCCCTCCGTGCAAGCTCGTGTTCT
CAAGCTGGTGAGCGAGTAGAAAACACACACTGAATGCACGGCGCGGAAGA
ACAATCCGACGCCACCACAAACTGGGCAGCGTTGCGAGAACATTCTTCGT
CCGAAACTCCAAGTATCAAACATTGACCGGCTTGTCGTGAACGCCTCCAT
GCTCCAAAAGCTACGTTTGCGTACGGCTGCAGCCCCAAAGAAGAAAAGGC
GCAATAGTTGTACAGGAGCGGTCGTCTGTTCTAGATTTCGTCACAATTTT
CGTCACTGGGCGCTCTCAAAACGTGGGGTAACCCCCTCTGCCTGCCCTTC
CAGTACAAAAGTGTACATAGTTACATAGAGTAGCGGTGTCTCTTTTCTGG
TGCCCTAGGCTGCTGGCTAAGCGCATGTCTCGGCACGGCATGTTGGCTGG
GGCGCCTTCCCTTACCCCGAACCATACCCGTGCTGTGCAAACATGCGCAG
TTTGCACCCGAGGAAGCGGCGTTCCCCCTGGTTCGCCGTCAAGCTTGGAA
CGACGCCCTGGACATGCTGCACCGACATGGTTTGCTCGCCGCAAGCCCTG
CCGCTGGTGGCCGCGAATCGGCAGGTGGAGATGCCGGCCGCAGTCAAGAA
AGCGGTGCTCAAAGCGGGGGAGGGCGTGGCCCAAGCCGACCCCCCTTGGG
CGCAGAGCGACGGTCCATGCTGACGAAGGTCTTGATGATCTGCGAGTCCA
ACATCTTCGGAGAGCCAGAAGACGAAGGTGAAAAGCACCAGCAAAAGTCA
ACCGGTAACTCGTGTTGTTTATTCTGTAGACGTCGCACCATCACACGCGT
CGCACAGCAGCAGTGACGATCGATCGGAGTGGCGGCGAATGTGACTGCAG
CCCACCTCTATTCCCATCGCACAAGGTGTGGGAGGGAGGGGTGGGGGAGG
GCACTTGACGATTGACGATACCCCCCGCAGCATAAGCTTTGCTTTTCACA
GAGTGTTGAGTGTCGTCGGCCCACGACTACCGGTATGCTAGTCACCCGCG
TCCTGTCACGGAGCTACATAGATGATCCACGCGCGTATTTCGTTATATTT
TTTTTTATGTACGAGGGCTACTCTTCGCACTCTCGCCATCATAGATTTCA
GTTCTTTCCTTCCGTTTCCACCACGGACCCGGCCTGAAACGCCGATACGG
GGCCTAGAAAGCCAAATCGCTCTGTTCGCACTCACTGTCCAACTCGGTCT
CCGACTTGGGCTGGCACGGGCAGAGGACGGGACGCGAGTGCTGTTCGAGC
TGACTACTCGGATGAACCACAGCTGTCTCCCTAACTGCGGGTGAGTGAAA
TCGCGAGCATTTTTTTTTTGTGAGTACAGATAGATGTGTCAACCGCGTAC
AGTATACACTCAAATATTGGAGTGGCTCTCAGTCAGGAATACCGGTACCC
GGTAGAAACATGTATTCCGCCCCGTTTTCGTCAAGCAATAGAAAAAGGCT
TCCCGGCCCCTACCCCGTGTATTCTCCCACCTTCCGACATCGGTACAAAG
ACGGGCGTAAGGTACACATTTGCCGAGTTTCGTGCGTACGCCGGAGTCAG
AACGGGGCTTGGACTTGATTGCACAGCAGCAGTGAGGGATTATGGGTCAA
TAGGCGAGCTTTGGCAGGCACACATTTGTTTGAGTTGCGAAGAGCGGTGC
GTTCGACTTGACTGTCACGGGATTCTCGGGCCGATGGCCACGTTCATTGG
GACGAAGACACCTCGGGTTTCGCTCGCCCCCCGCCTCCGCTGCCCTGCGC
GTTCACCTCACTCGTGTGGTATTTTGACTCATCAGTGCTCGCGAGCTTCT
TTTTTTTTTCCCTGTCTGATTTTCGCAGTTATGACTTGCGCAACGGGCGG
GTGGTGGTTCGAGCAAGCGTTGACGTGCCACA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig699:6556..14037-

>mRNA_P-littoralis_Contig699.3.1 ID=mRNA_P-littoralis_Contig699.3.1|Name=mRNA_P-littoralis_Contig699.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1521bp|location=Sequence derived from alignment at P-littoralis_Contig699:6556..14037- (Pylaiella littoralis U1_48)
ATGGGTACCGCAGTAGTAAGCATCGACTCGGACCTGCAAGTCGCCAAGGT
TGTGCGAGTTGACAAGGACAACGAACTAGCGCTTCTGCTTGTGGGTGGTC
GCGAAGGACAACCAGGTCGCACTCGCTGGTCCTTTTTGAAGGACCTCCCC
CCTGGCTTGCTCGGCGTTGGGGCATCGGAGAGTCATAACCTACCCAAGGA
GGGTAAGGATGAGAGCACGTGGACCTCGGAGAAGCCTCAAAATGTGGAGT
ACGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGGAGATGTTGCGAAATGGT
GTCCAAGGAGGTCAAGTGGGTGCGGAGAGGGGACGGGGAGCAGTGCCAGG
ACAACCGGTGAAAGGCGGTGGAACAAGCTCGGCACTTCCACGTAGTAGTG
ACGGCGGGGGGGTGACGACGAACCGTACGGACCAGGAGCAGGCAGGGAGA
TCGATAGCTGTCGAAGACCAGCAGAGGACTACCCGGAGAGAAAAGCGGCG
GCCCTACAAAGAGGGTTCGAGGGACTTGGCCGAGCAGCAGCCGCAGCAGC
AGCAGCAATCCCTCCCAGCAGAGCGCGAGTTAGCGGAGGACATAAGCGGT
GATTCGCCAACCTTGCCAGCATGCACCGGCACCAGCATGGCAGACCCAGA
AGGACGTGCCACTTCTGCCTCTGTCTCGGCAGAGAGCGGTGCCCTACCCG
CACCCCCCGAGCTTTTCATGCCGATAGCGAGACGCCCAGAGACGCTATCG
GCTGACACCGACGGCACGGATGCGGATAGGGACGCGGGTTTGGGGGAGGT
CTCGCCGGTCGTTTACCCGCCCAAGCGCATGCGGGATCTCCTCGAGGTGA
AGGCGAGCAACCCTGGTGGCAAGCGAGACGACTCCGCTCGGAGCGGCGAG
GGTCCCGTTTCCGCCACCGCCAACGCCACTACCACCAAGGGCTCGGCAGG
CCTGGGCGTATTTTGCAAGCGTGCGATCAGGGCGGGAGACGTCATCTTCG
AGGAGGAGGCGCTGCTGAAGGTTTCCAAGGACGCGGTGGACTGCAAGGTG
TGGGATGTCGTCTCGGCTGTGGCATGCAAATACCAACGTGCGAGCGTTTT
CGCGATGGATTTGCTGCAGGTGGTAGCCTTCGCCAGAGCCCCGCCCTCCG
TGCAAGCTCGTGTTCTCAAGCTGTTTGCACCCGAGGAAGCGGCGTTCCCC
CTGGTTCGCCGTCAAGCTTGGAACGACGCCCTGGACATGCTGCACCGACA
TGGTTTGCTCGCCGCAAGCCCTGCCGCTGGTGGCCGCGAATCGGCAGGTG
GAGATGCCGGCCGCAGTCAAGAAAGCGGTGCTCAAAGCGGGGGAGGGCGT
GGCCCAAGCCGACCCCCCTTGGGCGCAGAGCGACGGTCCATGCTGACGAA
GGTCTTGATGATCTGCGAGTCCAACATCTTCGGAGAGCCAGAAGACGAAG
AGGACGGGACGCGAGTGCTGTTCGAGCTGACTACTCGGATGAACCACAGC
TGTCTCCCTAACTGCGGGTGA
back to top