mRNA_P-littoralis_Contig698.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig698.38.1
Unique Name	mRNA_P-littoralis_Contig698.38.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig698.38.1 vs. uniprot
Match: A0A6H5J952_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J952_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.070e-37
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 3

Query:    6 NAMKNHERFGKRIVGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNGIYRLGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERFGKRI+GA+ VV FLR FFR+K G+ GEE MRKYFA WSPYR+R+VHVE IGK  +YR  S L G +GTR MYHFAGAN P    +TTT+G  D
Sbjct:  180 NAMKRRERFGKRIMGADGVVSFLRSFFREKAGSEGEEGMRKYFAKWSPYRMRRVHVEFIGKKEMYRPNSVLAGTEGTRDMYHFAGANTPKWDGSTTTEGRVD 281

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BLAST of mRNA_P-littoralis_Contig698.38.1 vs. uniprot
Match: A0A6H5JFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY7_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 4.460e-37
Identity = 65/102 (63.73%), Postives = 78/102 (76.47%), Query Frame = 3

Query:    6 NAMKNHERFGKRIVGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNGIYRLGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERFGKRI+GA+ VV FLR FFR+K G+ GEE MR+YFA WSPY +R+VHVE IGK  IYR  S L+G++GTR MYHFAGAN P    +T+T G +D
Sbjct:  122 NAMKRRERFGKRIMGADGVVRFLRSFFREKAGSEGEEGMRRYFAKWSPYPMRRVHVEFIGKKEIYRPNSILEGVEGTREMYHFAGANTPEWDGSTSTKGRED 223

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BLAST of mRNA_P-littoralis_Contig698.38.1 vs. uniprot
Match: A0A6H5JQG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG9_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.250e-36
Identity = 65/102 (63.73%), Postives = 78/102 (76.47%), Query Frame = 3

Query:    6 NAMKNHERFGKRIVGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNGIYRLGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERFGKRI+ AN VV FLR FFR+K G+ GEE MR+YFA WSPYR+R+VHVE IGK  +YR  S L+G++GTR MYHFAGAN P    +T+T G +D
Sbjct:  196 NAMKRRERFGKRIMVANGVVSFLRSFFREKAGSEGEEGMRRYFAKWSPYRMRRVHVEIIGKKEVYRPNSILEGVEGTREMYHFAGANTPKWDGSTSTKGRED 297

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BLAST of mRNA_P-littoralis_Contig698.38.1 vs. uniprot
Match: A0A6H5L293_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L293_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 5.930e-35
Identity = 65/102 (63.73%), Postives = 78/102 (76.47%), Query Frame = 3

Query:    6 NAMKNHERFGKRIVGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNGIYRLGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERFGKRI+GA+ VV FLR FFR+K G+ GEE MR+YFA WSPYR+R+VHVE I K  IYR  S L+G++GTR MYHFAGAN P    +T+T G +D
Sbjct:  502 NAMKRRERFGKRIMGADGVVSFLRSFFREKAGSEGEEGMRRYFAKWSPYRMRRVHVEFISKKEIYRPNSILEGVEGTREMYHFAGANTPKWDGSTSTKGRED 603

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BLAST of mRNA_P-littoralis_Contig698.38.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.300e-34
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 3

Query:    6 NAMKNHERFGKRIVGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNGIYRLGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQ 305
            NAMK  ERFGKRI+GA+ V  FLR FF +K G+ GEE MR+YFA WSPYR+R+VH E IGK  IYR  S L+G++GTR MYHFAGAN P    +TTT+GL+
Sbjct:  674 NAMKRRERFGKRIMGADGVFSFLRSFFEEKAGSEGEEGMRRYFAKWSPYRMRRVHFEFIGKKEIYRPNSILEGVEGTREMYHFAGANTPKWDGSTTTEGLE 774

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BLAST of mRNA_P-littoralis_Contig698.38.1 vs. uniprot
Match: A0A6H5L2L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L6_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 7.160e-34
Identity = 69/107 (64.49%), Postives = 80/107 (74.77%), Query Frame = 3

Query:    6 NAMKNHERFGKRIVGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNGIYRLGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQ-DIELV 320
            NAMK  E F KRI+GA+ VV FLR FFR+K G+ G E MRKYFA WSPYR+R+VHVE IGK  IYR  S L GI+GTR MYHFAGAN P    +TTT+GL+ D +LV
Sbjct:  468 NAMKRREIFDKRIMGADGVVSFLRSFFREKAGSEGGEGMRKYFAKWSPYRMRRVHVECIGKKEIYRPNSVLAGIEGTRDMYHFAGANTPKWDGSTTTEGLENDCKLV 574

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BLAST of mRNA_P-littoralis_Contig698.38.1 vs. uniprot
Match: A0A6H5JBS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS1_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 9.520e-34
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 3

Query:    6 NAMKNHERFGKRIVGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNGIYRLGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERFGKRI+G   VV FLR FFR+K G+ GEE MRKYFA W+PYR+R+VHVE  G   IYR  S L GI+GTR M HFAGAN P    +TTT+G +D
Sbjct:  144 NAMKWKERFGKRIMGTGGVVSFLRSFFREKAGSEGEEGMRKYFAKWAPYRMRRVHVEFFGMKEIYRTNSVLAGIEGTRDMCHFAGANTPKWDGSTTTEGRED 245

[Close]

BLAST of mRNA_P-littoralis_Contig698.38.1 vs. uniprot
Match: A0A6H5JLE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE6_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.630e-33
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 3

Query:    6 NAMKNHERFGKRIVGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNGIYRLGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERFGKRI+GA+ VV F R FFR+K G+ GEE MRKYFA WSPYR+R+VHVE IG   I R  S L G++GT  MYHFAGAN P    +TTT+GL+D
Sbjct:  207 NAMKRRERFGKRIMGADGVVSFWRCFFREKAGSEGEEGMRKYFAKWSPYRMRRVHVEFIGNKEISRPNSVLAGLEGTLDMYHFAGANNPKWDGSTTTEGLED 308

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BLAST of mRNA_P-littoralis_Contig698.38.1 vs. uniprot
Match: A0A6H5L7F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 6.250e-33
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 3

Query:    6 NAMKNHERFGKRIVGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNGIYRLGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERF KRI+GA+ VV FLR FFR+K G+ GEE MR++FA WSPYR+R+VHVE +GK  IYR  S L+G++GTR MYH AG N P    +T+T G  D
Sbjct:  228 NAMKRRERFVKRIMGADGVVSFLRSFFREKAGSEGEEGMRRFFARWSPYRMRRVHVEFMGKKEIYRPNSILEGVEGTREMYHLAGPNTPEWDGSTSTKGRGD 329

[Close]

BLAST of mRNA_P-littoralis_Contig698.38.1 vs. uniprot
Match: A0A6H5KLE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE4_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.720e-28
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 3

Query:   45 VGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNGIYRLGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            +GA+ VV FLR FFR+K G+ GEE MR YFA WSPYR+R+V VE IGK  IYRL S L GI+GTR MYHFAGAN P     TTT+G +D
Sbjct:    1 MGADGVVSFLRSFFREKAGSEGEEGMR-YFAKWSPYRMRRVQVEFIGKKEIYRLNSVLAGIEGTRDMYHFAGANTPKWDGFTTTEGRED 88

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig698.38.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig698.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J952_9PHAE	2.070e-37	65.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFY7_9PHAE	4.460e-37	63.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQG9_9PHAE	1.250e-36	63.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L293_9PHAE	5.930e-35	63.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KI10_9PHAE	1.300e-34	63.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L2L6_9PHAE	7.160e-34	64.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBS1_9PHAE	9.520e-34	62.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLE6_9PHAE	1.630e-33	63.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7F4_9PHAE	6.250e-33	59.80	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KLE4_9PHAE	1.720e-28	64.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig698	contig	P-littoralis_Contig698:150281..150600 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	321
Hectar predicted targeting category	other localisation
Exons	1
Cds size	309

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791444.9263113-CDS-P-littoralis_Contig698:150280..150589	1680791444.9263113-CDS-P-littoralis_Contig698:150280..150589	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig698 150281..150589 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791444.9375176-UTR-P-littoralis_Contig698:150589..150600	1680791444.9375176-UTR-P-littoralis_Contig698:150589..150600	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig698 150590..150600 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig698.38.1	prot_P-littoralis_Contig698.38.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig698 150281..150589 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig698:150281..150600-
coding sequence from alignment at P-littoralis_Contig698:150281..150600-

protein sequence of mRNA_P-littoralis_Contig698.38.1

>prot_P-littoralis_Contig698.38.1 ID=prot_P-littoralis_Contig698.38.1|Name=mRNA_P-littoralis_Contig698.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MKNHERFGKRIVGANKVVDFLRKFFRQKGGNGEEDMRKYFASWSPYRIRK
VHVEHIGKNGIYRLGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQDI
ELV

mRNA from alignment at P-littoralis_Contig698:150281..150600-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig698.38.1 ID=mRNA_P-littoralis_Contig698.38.1|Name=mRNA_P-littoralis_Contig698.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=320bp|location=Sequence derived from alignment at P-littoralis_Contig698:150281..150600- (Pylaiella littoralis U1_48)
CAAATAATGCCATGAAGAACCATGAGCGGTTTGGCAAGCGCATCGTGGGG
GCGAACAAGGTGGTGGACTTCTTGCGGAAATTTTTCCGCCAGAAGGGGGG
CAACGGTGAAGAGGACATGCGGAAGTACTTCGCGTCATGGTCTCCGTACC
GCATCCGCAAGGTGCACGTGGAGCATATCGGCAAGAACGGGATCTACCGG
CTCGGCTCGGAGCTGGACGGTATAGACGGAACGCGTGTGATGTACCACTT
TGCGGGAGCGAACATTCCGAGCCACCAAGCGGCTACCACAACGGACGGAC
TGCAAGACATCGAGCTAGTG

Coding sequence (CDS) from alignment at P-littoralis_Contig698:150281..150600-

>mRNA_P-littoralis_Contig698.38.1 ID=mRNA_P-littoralis_Contig698.38.1|Name=mRNA_P-littoralis_Contig698.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig698:150281..150600- (Pylaiella littoralis U1_48)
ATGAAGAACCATGAGCGGTTTGGCAAGCGCATCGTGGGGGCGAACAAGGT
GGTGGACTTCTTGCGGAAATTTTTCCGCCAGAAGGGGGGCAACGGTGAAG
AGGACATGCGGAAGTACTTCGCGTCATGGTCTCCGTACCGCATCCGCAAG
GTGCACGTGGAGCATATCGGCAAGAACGGGATCTACCGGCTCGGCTCGGA
GCTGGACGGTATAGACGGAACGCGTGTGATGTACCACTTTGCGGGAGCGA
ACATTCCGAGCCACCAAGCGGCTACCACAACGGACGGACTGCAAGACATC
GAGCTAGTG