mRNA_P-littoralis_Contig698.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig698.35.1
Unique NamemRNA_P-littoralis_Contig698.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig698.35.1 vs. uniprot
Match: A0A6H5JHD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD0_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 6.730e-6
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 2 
Query:  194 RMGEQPIIGVCSTCTDAHVGRDFLAKKKHARKGPKICPRIQQEW 325
            RMG     GVCS+C +A VGR FL   +HARKG KIC R +++W
Sbjct:  201 RMGGTKTGGVCSSCLEAGVGRQFLVDAQHARKGAKICSRTREQW 244
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig698.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHD0_9PHAE6.730e-654.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig698contigP-littoralis_Contig698:141868..142394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size527
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791443.5592785-UTR-P-littoralis_Contig698:141867..1420191680791443.5592785-UTR-P-littoralis_Contig698:141867..142019Pylaiella littoralis U1_48UTRP-littoralis_Contig698 141868..142019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791443.570793-CDS-P-littoralis_Contig698:142019..1423941680791443.570793-CDS-P-littoralis_Contig698:142019..142394Pylaiella littoralis U1_48CDSP-littoralis_Contig698 142020..142394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig698.35.1prot_P-littoralis_Contig698.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig698 142020..142394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig698.35.1

>prot_P-littoralis_Contig698.35.1 ID=prot_P-littoralis_Contig698.35.1|Name=mRNA_P-littoralis_Contig698.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
NGSVEKILGLAPGAIDWFLDSIEPEQRGSTRQQTTKRKAGTAFTLPEHTF
AGSNTDKNAELASDTDGGATNNRRVLDLHRRTCGARFLGEEKARQEGAEN
LPKNPTGVDSEVARRGRESASRKL*
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mRNA from alignment at P-littoralis_Contig698:141868..142394-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig698.35.1 ID=mRNA_P-littoralis_Contig698.35.1|Name=mRNA_P-littoralis_Contig698.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=527bp|location=Sequence derived from alignment at P-littoralis_Contig698:141868..142394- (Pylaiella littoralis U1_48)
AACGGCAGCGTAGAAAAAATTCTTGGCTTGGCGCCCGGCGCCATTGACTG
GTTCCTGGACTCGATAGAGCCCGAACAGCGTGGAAGCACGAGGCAACAGA
CGACGAAGCGAAAGGCTGGGACCGCTTTCACGTTGCCGGAACACACCTTT
GCAGGCAGCAACACAGATAAGAACGCCGAACTTGCATCGGACACGGATGG
GGGAGCAACCAATAATCGGCGTGTGCTCGACTTGCACCGACGCACATGTG
GGGCGCGATTTCTTGGCGAAGAAAAAGCACGCCAGGAAGGGGCCGAAAAT
CTGCCCAAGAATCCAACAGGAGTGGACTCGGAAGTCGCCCGTAGAGGTCG
CGAGAGCGCGTCGAGGAAACTTTGATACGTTCTTTTTACGACGTCCCCCT
GGTAAAAGTTGTCCCTGTTATCTGGCCTGGCGTGGGTACACGAAATATTT
CGCGGTTGGAAGCGTTGCTCTCGAGCGGAATAAAGCAATAATTGATCTCT
AAAACAATCAATGATGTGTGTGATATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig698:141868..142394-

>mRNA_P-littoralis_Contig698.35.1 ID=mRNA_P-littoralis_Contig698.35.1|Name=mRNA_P-littoralis_Contig698.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig698:141868..142394- (Pylaiella littoralis U1_48)
AACGGCAGCGTAGAAAAAATTCTTGGCTTGGCGCCCGGCGCCATTGACTG
GTTCCTGGACTCGATAGAGCCCGAACAGCGTGGAAGCACGAGGCAACAGA
CGACGAAGCGAAAGGCTGGGACCGCTTTCACGTTGCCGGAACACACCTTT
GCAGGCAGCAACACAGATAAGAACGCCGAACTTGCATCGGACACGGATGG
GGGAGCAACCAATAATCGGCGTGTGCTCGACTTGCACCGACGCACATGTG
GGGCGCGATTTCTTGGCGAAGAAAAAGCACGCCAGGAAGGGGCCGAAAAT
CTGCCCAAGAATCCAACAGGAGTGGACTCGGAAGTCGCCCGTAGAGGTCG
CGAGAGCGCGTCGAGGAAACTTTGA
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