mRNA_P-littoralis_Contig697.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig697.22.1
Unique NamemRNA_P-littoralis_Contig697.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig697.22.1 vs. uniprot
Match: D7FTI7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI7_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.710e-38
Identity = 74/111 (66.67%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 MARRAVSVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            MARRAVSVEIFAAGDGINYPQK                                    VVPGLD+GVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN
Sbjct:    1 MARRAVSVEIFAAGDGINYPQKGQTVTVHYTGYLEDGTQFDSSRNRGKPFKFKLGSEQVVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 111          
BLAST of mRNA_P-littoralis_Contig697.22.1 vs. uniprot
Match: A0A7S2C1G0_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1G0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 9.590e-29
Identity = 61/111 (54.95%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 MARRAVSVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            M R  V+VEIFAAGDGINYP+K                                    V+ GLD+GVSQLSIGERAK++IPAA AYG RGFPGLVPP S LVFDLELITFN
Sbjct:    1 MPRHDVAVEIFAAGDGINYPRKGQTVTVHYTGYLPDGDTFDSSRDRGKPFKFKLGAEQVILGLDQGVSQLSIGERAKISIPAALAYGERGFPGLVPPDSELVFDLELITFN 111          
BLAST of mRNA_P-littoralis_Contig697.22.1 vs. uniprot
Match: A0A6U1QP22_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QP22_9STRA)

HSP 1 Score: 102 bits (255), Expect = 9.660e-27
Identity = 57/106 (53.77%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPQ------------------------------------KVVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            V VEIFAAGDGINYPQ                                    +V+ GLDEGVSQLSIGERAK+TIP+   YG RGFPGLVPP+S LVFDLELITF 
Sbjct:    8 VKVEIFAAGDGINYPQPGKTVTVHYTGFLPDGTQFDSSRDRGKPFKFKLGAEQVISGLDEGVSQLSIGERAKITIPSQKGYGERGFPGLVPPNSQLVFDLELITFT 113          
BLAST of mRNA_P-littoralis_Contig697.22.1 vs. uniprot
Match: F0YHE6_AURAN (Peptidylprolyl isomerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHE6_AURAN)

HSP 1 Score: 101 bits (252), Expect = 2.690e-26
Identity = 54/109 (49.54%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    7 RRAVSVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            ++ ++VEIFAAGDG+NYP+K                                    V+PGLD GVSQLSIGERAK+ IP   AYG RGFPGL+P +SAL+FDLELITFN
Sbjct:    4 KKDIAVEIFAAGDGVNYPRKGQTVTVHYSGYLPSGDMFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKIVIPPDMAYGDRGFPGLIPRNSALIFDLELITFN 112          
BLAST of mRNA_P-littoralis_Contig697.22.1 vs. uniprot
Match: A0A8J2T2V8_9STRA (Peptidylprolyl isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2V8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.590e-25
Identity = 53/106 (50.00%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYP------------------------------------QKVVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            ++VEIFAAGDG+NYP                                    ++V+PGLD GVSQLSIGERAK++IP+  AYG RGFPGL+P +SALVFDLELITF+
Sbjct:    8 IAVEIFAAGDGVNYPRQGQTVTVHYSGYLPNGEIFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKISIPSDMAYGERGFPGLIPRNSALVFDLELITFS 113          
BLAST of mRNA_P-littoralis_Contig697.22.1 vs. uniprot
Match: A0A836CL56_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL56_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.070e-22
Identity = 41/55 (74.55%), Postives = 51/55 (92.73%), Query Frame = 1
Query:   61 QKVVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            ++VVPGLDEG +QLSIGERAK+T+P + AYGA+GFPGLVPP+S LVFD+ELITF+
Sbjct:   54 EQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 108          
BLAST of mRNA_P-littoralis_Contig697.22.1 vs. uniprot
Match: A0A485LR83_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LR83_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.530e-22
Identity = 48/106 (45.28%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            V VE+F AGDG+NYP+K                                    V+PGLDEG+ QL + ERAK+ IPA  AYG +GFPGLVPP++ LVFD+ELITF 
Sbjct:   21 VQVEVFVAGDGVNYPKKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIEQLCMKERAKIYIPADKAYGKKGFPGLVPPNTNLVFDIELITFK 126          
BLAST of mRNA_P-littoralis_Contig697.22.1 vs. uniprot
Match: K3WSB6_GLOUD (Peptidylprolyl isomerase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB6_GLOUD)

HSP 1 Score: 90.9 bits (224), Expect = 6.210e-22
Identity = 48/106 (45.28%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            + VE+F AGDGINYP+K                                    V+PGLDEGV +L + ERAK+ IPA  AYG +GFPGLVPP+S L+FDLEL+TF 
Sbjct:   16 IQVEVFIAGDGINYPKKGQTVVVHYTGYLQDGRKFDSSRDREKPFKFKLGAEQVIPGLDEGVERLCMKERAKIFIPADKAYGRKGFPGLVPPNSNLIFDLELLTFR 121          
BLAST of mRNA_P-littoralis_Contig697.22.1 vs. uniprot
Match: A0A024TRW9_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TRW9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.010e-21
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            + VE+F AGDGINYPQK                                    V+PGLDEG+ +L + ERAK+ IP+  AYG +GFPGLVPP++ LVFD+ELITF 
Sbjct:   21 IQVEVFVAGDGINYPQKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIERLCMKERAKIYIPSDKAYGKKGFPGLVPPNTNLVFDIELITFK 126          
BLAST of mRNA_P-littoralis_Contig697.22.1 vs. uniprot
Match: A0A7S1CR57_9STRA (Peptidylprolyl isomerase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CR57_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.920e-21
Identity = 48/112 (42.86%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    1 MARRAVSVEIFAAGDGINYP-------------------------------------QKVVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            M++  V+VEIF AGDG+NYP                                     ++V+ GLDEGV+QLSIGE A++ IP+  AYGA GFPGLVPP+  L FD+ELI+F+
Sbjct:   13 MSKGRVTVEIFKAGDGVNYPKPGNVVTLHYTGYYGRAQTEFDSTRTRGKPFKFKLGAEQVIEGLDEGVAQLSIGEHAQIHIPSEKAYGAHGFPGLVPPNKDLTFDVELISFS 124          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig697.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTI7_ECTSI1.710e-3866.67Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S2C1G0_9STRA9.590e-2954.95Peptidylprolyl isomerase n=1 Tax=Florenciella parv... [more]
A0A6U1QP22_9STRA9.660e-2753.77Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
F0YHE6_AURAN2.690e-2649.54Peptidylprolyl isomerase n=1 Tax=Aureococcus anoph... [more]
A0A8J2T2V8_9STRA1.590e-2550.00Peptidylprolyl isomerase n=1 Tax=Pelagomonas calce... [more]
A0A836CL56_9STRA1.070e-2274.55Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A485LR83_9STRA3.530e-2245.28Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
K3WSB6_GLOUD6.210e-2245.28Peptidylprolyl isomerase n=1 Tax=Globisporangium u... [more]
A0A024TRW9_9STRA1.010e-2144.34Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
A0A7S1CR57_9STRA1.920e-2142.86Peptidylprolyl isomerase n=1 Tax=Bicosoecida sp. C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig697contigP-littoralis_Contig697:107841..109588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FTI7
PFAMsFKBP_C,MtN3_slv
Model size228
Max annot lvl2759|Eukaryota
KEGG koko:K09568,ko:K15382
KEGG TC9.A.58.1
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.81e-39
EggNOG OGsCOG0545@1|root,KOG0544@2759|Eukaryota
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-21_001540.1
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
Cds size228
COG categoryO
BRITEko00000,ko01000,ko02000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791443.0774007-CDS-P-littoralis_Contig697:107840..1079061680791443.0774007-CDS-P-littoralis_Contig697:107840..107906Pylaiella littoralis U1_48CDSP-littoralis_Contig697 107841..107906 +
1680791443.0930703-CDS-P-littoralis_Contig697:108969..1090261680791443.0930703-CDS-P-littoralis_Contig697:108969..109026Pylaiella littoralis U1_48CDSP-littoralis_Contig697 108970..109026 +
1680791443.1063504-CDS-P-littoralis_Contig697:109483..1095881680791443.1063504-CDS-P-littoralis_Contig697:109483..109588Pylaiella littoralis U1_48CDSP-littoralis_Contig697 109484..109588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig697.22.1prot_P-littoralis_Contig697.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig697 107841..109588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig697.22.1

>prot_P-littoralis_Contig697.22.1 ID=prot_P-littoralis_Contig697.22.1|Name=mRNA_P-littoralis_Contig697.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
MARRAVSVEIFAAGDGINYPQKVVPGLDEGVSQLSIGERAKVTIPAASAY
GARGFPGLVPPHSALVFDLELITFN*
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mRNA from alignment at P-littoralis_Contig697:107841..109588+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig697.22.1 ID=mRNA_P-littoralis_Contig697.22.1|Name=mRNA_P-littoralis_Contig697.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1748bp|location=Sequence derived from alignment at P-littoralis_Contig697:107841..109588+ (Pylaiella littoralis U1_48)
ATGGCAAGGAGGGCGGTTTCTGTGGAGATCTTTGCGGCAGGGGACGGCAT CAACTACCCACAGAAGGTCCGGGAGTTTCGTCGACAACTTCTTGGTTGCG AATGATCGCCGCATACTCATAGGCATTGCGCATGAGCAGGAAACAGCCGT ACTTTGTCACACCCGAACGTTTAGCCCTTCAGCAAGAGGTTCCGGGTTAG TTCCCGAGTCCATCATCAATATTTTGAGATACTGCAGTACATACCTTTTT TTTGTATTGACAGTAGGTGACCCTTGTTGCACACACAGCAGCAGTAAACA TGGTGATCGCGTAGATCTGTATCCTGTCGACTTGCCGTTATCGAATGATC GATGCATCCAAATACTGCTGTACACTGCCTACACCAACGGATTATTTAGG GGCAGACGGTGACCGTACACTACACTGGATACCTGGAGGATGGGACCCAA TTTGATTCGTCCCGAAATCGGGGCAAGCCTTTCAAGTTCAAGCTCGGAAG CGAGCAGGCGAGAGCTGGGGTGGGGATGGGGAGAGGGAGGGTGTGAGCAA TCAATCCAATCCAGAGGGTCCCATGTTTAAATCTACGACACCTACCTGCA GTTCTGTAACGTGATGCTTGGGTCTACGTCACCAGAGATACAACTTGTGC CCTCGACGCACTACAGCGCAGTTGTTTGCGCGGAATGAGCTCACGTGTTG CTGCCGTTGTGCACATGCCGTATGTGTGTCGTTTCCTGCCCAAGCAGTTT GGTTTGTACTCGATGGCCAATGATAATTCTGGTGCGGGACAACTGCACAA CATGTCGATGACCCGTTGTAGAAGAACTGAAGCGTTTGAGCGCAAGGTGA AAGCAATCCCGCACGCAAGGGGAATGCGTGAGAACGCCGTGTTCGGACCA CCACTACGTATGTGATACCACTTGCGGTGCGATGTAATGGTGGGAGGCGT CCATCACAGCATCTCAGATGTTTGTATATGCAAATATTTGCACTTTCTTT TTCAAGGTATACCAAAATACCAAAATACTACTCGGAGTATAAGATATCAC GAGGCGGAGCTCGAAATGCCGTTGACTGACGTAGTTTTCAATCCTTCCTC CTCCTGCCCTCCGATTTTGATCGCTTCAGGTCGTACCAGGATTAGACGAG GGCGTGAGCCAGCTTAGCATAGGAGAACGTGCAAAGGTAACAACATCAAT GACGGCACAAATCACACATCCCGGGTTTCACCCCCGGGCAAACGCGCGTG GGTCTAAAAGGCTATGCTTGAGTCCAAAAGGGTTCGGTTCACGGAAACAC GGAACAACGCGCTGTCTTCGGTACACTTAATGCGAAGTATTCGAAGTAGT ACGACAGACTTGGGAGTGCTCCTACAAACATCCCATCCCATCGGTTGCAG GAAGTCACGTAAAAAATTGAGAACGTGCTGTCAGCCAGTCTTCCTTTGTC CCCTTTGAGAGGAGACCTTCGGGTCTCTCCTCGGTACTCATTCGGCAGTC GTGCCGTGATCGCGTGGACGGCCGTCCTCAGAGGCTTGTTCGTATCCTGC ATCTTCCAAACTACGACTCTCAACACTCTCCTCTTCGCGCCGCTTTTCGA CCGCTTTACGTGATTCTTCGCTTTCGCTCGCCATGCTCCCAAGGTCACAA TTCCGGCGGCTTCAGCGTATGGGGCACGAGGATTTCCGGGCCTCGTCCCT CCGCACTCCGCATTGGTGTTCGACTTAGAATTGATCACCTTCAACTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig697:107841..109588+

>mRNA_P-littoralis_Contig697.22.1 ID=mRNA_P-littoralis_Contig697.22.1|Name=mRNA_P-littoralis_Contig697.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig697:107841..109588+ (Pylaiella littoralis U1_48)
ATGGCAAGGAGGGCGGTTTCTGTGGAGATCTTTGCGGCAGGGGACGGCAT
CAACTACCCACAGAAGGTCGTACCAGGATTAGACGAGGGCGTGAGCCAGC
TTAGCATAGGAGAACGTGCAAAGGTCACAATTCCGGCGGCTTCAGCGTAT
GGGGCACGAGGATTTCCGGGCCTCGTCCCTCCGCACTCCGCATTGGTGTT
CGACTTAGAATTGATCACCTTCAACTGA
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