mRNA_P-littoralis_Contig697.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig697.20.1
Unique NamemRNA_P-littoralis_Contig697.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig697.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig697contigP-littoralis_Contig697:103983..107529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1719
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-21_001550.1
Cds size825
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791442.9965215-UTR-P-littoralis_Contig697:103982..1048181680791442.9965215-UTR-P-littoralis_Contig697:103982..104818Pylaiella littoralis U1_48UTRP-littoralis_Contig697 103983..104818 -
1680791443.0476322-UTR-P-littoralis_Contig697:107471..1075291680791443.0476322-UTR-P-littoralis_Contig697:107471..107529Pylaiella littoralis U1_48UTRP-littoralis_Contig697 107472..107529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791443.0089848-CDS-P-littoralis_Contig697:104818..1051361680791443.0089848-CDS-P-littoralis_Contig697:104818..105136Pylaiella littoralis U1_48CDSP-littoralis_Contig697 104819..105136 -
1680791443.024448-CDS-P-littoralis_Contig697:105311..1057731680791443.024448-CDS-P-littoralis_Contig697:105311..105773Pylaiella littoralis U1_48CDSP-littoralis_Contig697 105312..105773 -
1680791443.0360832-CDS-P-littoralis_Contig697:107426..1074711680791443.0360832-CDS-P-littoralis_Contig697:107426..107471Pylaiella littoralis U1_48CDSP-littoralis_Contig697 107427..107471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig697.20.1prot_P-littoralis_Contig697.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig697 104819..107471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig697.20.1

>prot_P-littoralis_Contig697.20.1 ID=prot_P-littoralis_Contig697.20.1|Name=mRNA_P-littoralis_Contig697.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=275bp
MMRVMLWMLAEPLKALSVALGADLLILAAMCVNALRTAEKEEEDEKNARI
ASASKAEQVVAAAAAVQEKPDALDKAELELDEVETRMSLLAAGHREEAMR
RRAEREEQQQEVMLGKIVCERSEAKLAMVRRARAVRREHQEGKTAAAKQR
LKKAEPTRATTAKLLKTEQEGVDVLEAEAKRRFGVKASESPVNPTLQLVA
PSLQKNSYRDLTPNEEEERQRLLMPRGAGQDFESAVASRIDGKEDSAGPA
EEEGLWGSGIDLEEDEMAKRWIFK*
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mRNA from alignment at P-littoralis_Contig697:103983..107529-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig697.20.1 ID=mRNA_P-littoralis_Contig697.20.1|Name=mRNA_P-littoralis_Contig697.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3547bp|location=Sequence derived from alignment at P-littoralis_Contig697:103983..107529- (Pylaiella littoralis U1_48)
TAGCACCAAACACATAAAAAGAACGCACAAGCAGAAGTGTACTGCACGGC
CTGGAAGTATGATGCGCGTCATGCTGTGGATGCTCGCAGAGCCCCTCAAG
GCGGTGAGTGCTGTGTGGTGTGTGAGATTTGCCTTGTGTGAGGGAGAGGG
AACGCGTGTGACGCGTTGAGTGCTGGACATAGATTGGGGGACGATACTGA
CATGACTGAGTGATATCTTTCGCGTGGACTGCTGCTGTCGGCGACACTGA
CTCCATTTCACGACCATCAACATTTAGGGAGCTCAAAGCCGACGATATGA
CGAGAACGCTTCTCTGGGTAGGTTGATGTCCGTATAAAACTCGACAAGAT
TGTTTGGGTGGCTGTAGTTTTCAGCAGCAGGACGCGCTTGATAGTTTCTA
TGCCCGCACAGCCTGCACGCCTTCACCATATCCGTGGAAGCAAGATCGAG
AGGTTGTTGGGAGGCGGGAGTGAGTGTAAGGCGTGGTGCAGGCGGGAGTG
TAATATGAGAGTTTTCGCCTCTGCTTGGGCTTATTTTTGGGTTGCTTTTC
CAGCCAAGGCTTCTACCTACCGTGGAAAGCTGCGCACGCGCGAGAGTTTG
CGCGCATCGACACGATCGCCATACGTGGCGATACTCCTCGTAACGAAGTA
AAACGAGGTACGAGAAGTAAAAAAACAAAAAAACGAGAAAGGCATCATCA
CAACGCACGATCCTTCCGGTGTACTCCGTATATATTTCGCGATTCCTGAT
GATTGGCCAAATCTGACAGAATGTCTCATGTATTACGCCGCATTTACCCA
TCACACGTGTCCATCATGTGCTCGCAGCTCGCATGCTCATGTGCTCGCAA
CGTGCTGGATATAATCATTTACAGACAGTTGACGGCTAGGCCGAAACAGA
GGAGCAGAGGCTAGTGGAGGAACAGAGGTTCTACCTCCAAACCTCAATAT
CTCAGTGCCCTGCACTGTTCTTCTGACTAAGCCAACGACATGCTGTAAAC
AGCTCTAAAATTAAGGAAATACGACGGCTAACACATGCCCTTACTCCGTG
TACACGTGACCTCCTCCGTGTTTGATTATTAGACTATATGGTTCGTCTGC
CCGTGCCGTACAGTATGATTTTTAAACTTTATATAGCTCTACGTTACACG
CATCGCAGCTCCAGTGATCATGACGAGAGCAGTGATGGACATTCTGGCAC
TGCTGTTATTGTGCATTTGTGTGCCTCTCCACCTCGCTCATGCTCAACAC
CTTACTTGGTGCTGCCGTACAGCAAGCGCCCGCTCACAACAGCGTTGGTC
ATACAACAACCACTGCATGCAATACGTACTAGAAATGTGAGCCTCTTATG
TTCGGGCGCCCGCTACCTAAAGTCGGGCATAACAACATTTTTCAATCTTT
CCCTTTGGAGTAAATTTTCCCCTTCGCCACCTGCTGACACTTCCATCCGG
AGATTCCGGACGACTAAATAACGACCCTTTTTATCTATTGGTGTTGACTT
CTCAACTCTCCACGCTGGGGCTGTGTTTGGTATACTCGGTATGCAACCAG
TCGCCCGATTAGCACGGTCTTAGAACTGCTACAACTGATAAAAGCTGAAT
GCAATAAAATCAGCTGGCATCATGCCCCCTCCCCTCCGTCAGTAGCATCA
AAATATATTTCGGAAAGCACCATATAGCTCCTTTCATCTCACACACACCG
AATAACTCGTGTATCTCCCGCCCGCTCGCTCACTCTCTTCCCTCTCTTTC
GCTCAGCTCTCCGTGGCCCTTGGTGCGGATCTCTTGATCCTCGCCGCTAT
GTGCGTCAACGCCTTGCGTACCGCCGAGAAGGAAGAAGAGGACGAGAAGA
ACGCTCGCATTGCCTCAGCCAGCAAAGCTGAGCAGGTCGTCGCCGCCGCA
GCTGCTGTGCAGGAGAAGCCCGACGCCCTCGATAAGGCCGAGCTCGAGCT
CGACGAAGTGGAAACCAGGATGAGCCTCCTCGCGGCGGGGCACAGAGAAG
AGGCGATGCGCCGCCGCGCCGAGCGGGAAGAGCAGCAGCAGGAGGTCATG
CTCGGGAAGATTGTGTGCGAAAGGTCGGAGGCAAAGCTGGCGATGGTGAG
AAGAGCGCGTGCGGTCCGCCGGGAGCACCAGGAGGGAAAGACTGCCGCGG
CGAAACAGCGATTGAAAAAAGCGGAGCCGACCAGGGCAACGACAGCGAAG
CTTCTCAAGACAGAACAGGTAGTGGGTGATCGTTGTGGATAATGGTTGAT
TAAACCAGCTTTAAACTGGCAGTGATTTCGGAGCGCACTTTCTCTGTGTA
GGTTAACCTTTGTTACGCGTAATTAAGTAAAGTTTCGATAATGTCCCCCA
CATTGCATTGTACTGGTATGTTTTTTCTCTTCCGAACAACCAGGAGGGGG
TCGACGTGCTCGAGGCCGAGGCCAAGAGGAGGTTTGGCGTGAAGGCCAGC
GAGAGCCCCGTGAACCCTACCCTGCAGCTCGTCGCCCCGTCCCTCCAAAA
GAATTCTTACCGCGATCTTACCCCGAACGAGGAGGAAGAGCGGCAGCGGT
TGCTCATGCCACGCGGGGCCGGTCAGGATTTCGAGAGCGCGGTGGCTTCC
CGAATCGACGGCAAGGAAGACTCTGCTGGCCCTGCTGAGGAGGAGGGGCT
GTGGGGTTCAGGGATTGACCTGGAGGAGGATGAAATGGCGAAGCGGTGGA
TTTTCAAATGAGCAAGGTAGGTGGAGGTGCTCATGCAGCAGAAGAAGAAA
GAAAAGCAGAGGCGTAGCTAGAGGAGCCAGAGGAGCGGGTGAAGCAGGAG
GAAGAGGAAAACAGACGATGGAGGTGGCCTGCGTGACTCAACTCCTATAC
GCAATCCAGGAGTAAAAAGCTGGCGTTGCGTAGTTGCAATCTGGGGACTG
CTTCACGTTTCTTTGGCATGACGGTATTCCATTCGTGAGCTACTTTATTT
GGAAGTGATTCCACTGCGGTGAGCGTGGGCCGCAGCAGCTGCTGCAGGTG
GTTCTATTTTTTTGCCTATAGTTCGATAAAATTTGGTCTGCAGCTCAAAA
CGTAAACTTGCGCTGCTTGGTATCGCGGTAGCTATGCGCTAGAGTTTCTG
TGCGTTCCAACTTCCATTGGGGTACATTTGATTGCTGCTGTTTTCTTTTG
CTCGCAATTGGCGTGTGTCTTGTTTGCCCCCGTTTTGTTTGGATGATGGG
GTCTCGGTGCCTACGTTTTTGCCCGACAGCGGTTGCCACGCGATACTGGA
CGTTTGCGTGGTGTACACCTTGGATCCTCACGCGGTACGACAACACCGGT
TCTACCGTACGTAATCCCCATTGTTGCAAGGGAGTATCACAGCCGTTGAG
AGAGCAGTTTACACGGTCTGTGCGACACAGCAGCAATACAGTAGCTCCAG
TGTTTCGAGCAGTCGAACGCTTCAATGCCGCGCTCTCTTGTGCTTGTCGA
TAAATCAAAAGCGAGGTGAGAAACCTATCACAGCATGGCTGAGTTTTTGC
GTCTATTCTTCCTTCCGTTGCAAGATTTCGACGCACGGCGAGGGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig697:103983..107529-

>mRNA_P-littoralis_Contig697.20.1 ID=mRNA_P-littoralis_Contig697.20.1|Name=mRNA_P-littoralis_Contig697.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=825bp|location=Sequence derived from alignment at P-littoralis_Contig697:103983..107529- (Pylaiella littoralis U1_48)
ATGATGCGCGTCATGCTGTGGATGCTCGCAGAGCCCCTCAAGGCGCTCTC
CGTGGCCCTTGGTGCGGATCTCTTGATCCTCGCCGCTATGTGCGTCAACG
CCTTGCGTACCGCCGAGAAGGAAGAAGAGGACGAGAAGAACGCTCGCATT
GCCTCAGCCAGCAAAGCTGAGCAGGTCGTCGCCGCCGCAGCTGCTGTGCA
GGAGAAGCCCGACGCCCTCGATAAGGCCGAGCTCGAGCTCGACGAAGTGG
AAACCAGGATGAGCCTCCTCGCGGCGGGGCACAGAGAAGAGGCGATGCGC
CGCCGCGCCGAGCGGGAAGAGCAGCAGCAGGAGGTCATGCTCGGGAAGAT
TGTGTGCGAAAGGTCGGAGGCAAAGCTGGCGATGGTGAGAAGAGCGCGTG
CGGTCCGCCGGGAGCACCAGGAGGGAAAGACTGCCGCGGCGAAACAGCGA
TTGAAAAAAGCGGAGCCGACCAGGGCAACGACAGCGAAGCTTCTCAAGAC
AGAACAGGAGGGGGTCGACGTGCTCGAGGCCGAGGCCAAGAGGAGGTTTG
GCGTGAAGGCCAGCGAGAGCCCCGTGAACCCTACCCTGCAGCTCGTCGCC
CCGTCCCTCCAAAAGAATTCTTACCGCGATCTTACCCCGAACGAGGAGGA
AGAGCGGCAGCGGTTGCTCATGCCACGCGGGGCCGGTCAGGATTTCGAGA
GCGCGGTGGCTTCCCGAATCGACGGCAAGGAAGACTCTGCTGGCCCTGCT
GAGGAGGAGGGGCTGTGGGGTTCAGGGATTGACCTGGAGGAGGATGAAAT
GGCGAAGCGGTGGATTTTCAAATGA
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