mRNA_P-littoralis_Contig1176.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1176.4.1
Unique NamemRNA_P-littoralis_Contig1176.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1176.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1176contigP-littoralis_Contig1176:2484..3579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size601
Hectar predicted targeting categoryother localisation
Exons2
Cds size600
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789491.995862-CDS-P-littoralis_Contig1176:2483..30001680789491.995862-CDS-P-littoralis_Contig1176:2483..3000Pylaiella littoralis U1_48CDSP-littoralis_Contig1176 2484..3000 +
1680789492.008908-CDS-P-littoralis_Contig1176:3496..35791680789492.008908-CDS-P-littoralis_Contig1176:3496..3579Pylaiella littoralis U1_48CDSP-littoralis_Contig1176 3497..3579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1176.4.1prot_P-littoralis_Contig1176.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1176 2484..3579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1176.4.1

>prot_P-littoralis_Contig1176.4.1 ID=prot_P-littoralis_Contig1176.4.1|Name=mRNA_P-littoralis_Contig1176.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=200bp
ILGESWNTFKKKAKVCDKRGSQSTVYAAINKQGLAVAFGNKNKSNVSPGL
GRMPILSTCCLRLAFDHKVMGQFLLHSADKEEVKDARYLAVEFSMLCVDH
VAPGPISSFERLWEELDPNGFLKKNIIAQPTILDMKGKPFFDKERAAIIA
AAGNGASPGTEGSKQEDHLDKNDADKRTSRIQINLADGETFLTDLPMDMV
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mRNA from alignment at P-littoralis_Contig1176:2484..3579+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1176.4.1 ID=mRNA_P-littoralis_Contig1176.4.1|Name=mRNA_P-littoralis_Contig1176.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1096bp|location=Sequence derived from alignment at P-littoralis_Contig1176:2484..3579+ (Pylaiella littoralis U1_48)
ATTTTGGGAGAGTCGTGGAACACCTTCAAAAAGAAGGCCAAGGTGTGCGA
CAAGAGGGGTTCGCAGTCGACTGTGTACGCGGCTATCAACAAGCAGGGCT
TGGCCGTTGCTTTCGGAAATAAGAATAAAAGCAACGTGTCACCGGGGCTT
GGCAGGATGCCCATTCTTTCGACGTGTTGTCTACGTCTAGCCTTCGACCA
CAAGGTCATGGGTCAGTTCCTTCTTCACTCTGCGGACAAAGAGGAGGTGA
AAGACGCTCGGTACTTAGCTGTCGAGTTCAGCATGCTGTGCGTGGATCAC
GTTGCGCCTGGTCCGATCTCCAGCTTCGAACGCCTCTGGGAGGAACTTGA
TCCCAATGGATTCCTGAAGAAGAACATCATTGCACAGCCTACAATTTTGG
ACATGAAGGGGAAACCATTCTTCGACAAAGAACGAGCCGCTATCATCGCA
GCAGCGGGTAACGGGGCTAGCCCGGGAACGGAGGGAAGTAAGCAAGAAGA
CCACCTCGACAAGAATGGTGAGGAGGATGACGGAAGTGAGAGTCTCTGTA
TTGTTTTAACATTCAAAGTACACAGTGGTTCCACAGCAGTGATGCTGGAT
GTTTTGCAATGATCTCAACATCCAAGATCAAAATTCACCTCCGGCGCGAA
ATGAAACTACGACCTGATGTAGAGCCGCGTCCAAAAACAAGCTTGGACAT
TGAAGGAATGGATCTCCTCAGGTAAATGATTGAATTTCCTGTTGTTGTAA
CATATGTCAACATAACGGTATCAGCGTGAGCTCCTTACATGACGAACTAC
CTGGTATGCTTTTTCACCATATCTGTTTGTTCGTAGTGTGTGCTGCTTGG
ACATTGAATGTATGGATCTCCTCAGGTAAATGATTTAATTTCCTGTTGTT
GCATCATATGTCAACATAACGGTATCAGCGTGAGCTCCTTACATGACGAA
CTACCTGTTGACCCTATTTTATTTCGCTATGTCGCTGTTTTCCTGCCAAC
ACCGGCGTTGAAGACGCCGACAAGCGAACGTCTCGAATACAGATTAACCT
GGCCGATGGCGAGACCTTCCTCACGGATCTCCCAATGGACATGGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1176:2484..3579+

>mRNA_P-littoralis_Contig1176.4.1 ID=mRNA_P-littoralis_Contig1176.4.1|Name=mRNA_P-littoralis_Contig1176.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=600bp|location=Sequence derived from alignment at P-littoralis_Contig1176:2484..3579+ (Pylaiella littoralis U1_48)
ATTTTGGGAGAGTCGTGGAACACCTTCAAAAAGAAGGCCAAGGTGTGCGA
CAAGAGGGGTTCGCAGTCGACTGTGTACGCGGCTATCAACAAGCAGGGCT
TGGCCGTTGCTTTCGGAAATAAGAATAAAAGCAACGTGTCACCGGGGCTT
GGCAGGATGCCCATTCTTTCGACGTGTTGTCTACGTCTAGCCTTCGACCA
CAAGGTCATGGGTCAGTTCCTTCTTCACTCTGCGGACAAAGAGGAGGTGA
AAGACGCTCGGTACTTAGCTGTCGAGTTCAGCATGCTGTGCGTGGATCAC
GTTGCGCCTGGTCCGATCTCCAGCTTCGAACGCCTCTGGGAGGAACTTGA
TCCCAATGGATTCCTGAAGAAGAACATCATTGCACAGCCTACAATTTTGG
ACATGAAGGGGAAACCATTCTTCGACAAAGAACGAGCCGCTATCATCGCA
GCAGCGGGTAACGGGGCTAGCCCGGGAACGGAGGGAAGTAAGCAAGAAGA
CCACCTCGACAAGAATGACGCCGACAAGCGAACGTCTCGAATACAGATTA
ACCTGGCCGATGGCGAGACCTTCCTCACGGATCTCCCAATGGACATGGTA
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