mRNA_P-littoralis_Contig697.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig697.16.1
Unique NamemRNA_P-littoralis_Contig697.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig697.16.1 vs. uniprot
Match: A0A6H5JSP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP6_9PHAE)

HSP 1 Score: 313 bits (803), Expect = 6.700e-99
Identity = 197/334 (58.98%), Postives = 222/334 (66.47%), Query Frame = 1 
Query:  214 QHVCFRPVTCTTYSSTHCNRSSRCSSATFGKVLLLRRAVFDQEFWHMFSQPL-RSLSCGR-----------------AAMTRAEGLYSR-SAAIVGYTRAFGGQSVVPWELALFLVEEMKAEMVQPGAVVYTAALAECRWAGEQRHVDYLLQEMEAEGLSIVPGIPGATDNELPPSQAPPLFGKLPETPPGMSKSNPQHAPLAAAPTPSTAVAT----MQAAARTADAALVTVETMWAREEHDPSPATCRAALDACAAGGQWERALSMVRDAAMAITADGDAGNSGGGEEEEDLEEGSVSRRVETLALAGKWNKALLLVQGEEGLSEHGGAGGE 1146
            +H C  P    TY   H N SS  SSA   KVL L R V  Q+  +  S P  R + C                   A MTR+  +  R S A VG  R FGGQSVVPWELALFLV+EMK EMVQPGAVVYTAALAECRWAGEQRHVDY+L+EM+AEGL+IVPGIPGAT+++ PPSQ+PPLFGKLPE PP  + + PQH P    P    A A     MQ AARTA+AAL TVETMWAR +HDPSPATCRAALDACAAGGQWERALS+VRDAA A+T     G S   +  E  EEG V  RVE LAL G+W+ ALLLVQG+   SE GG G E
Sbjct:   42 KHQCGVPSRSATY---HVNPSSA-SSAAISKVLPLGRTVPKQQRHYCCSLPRNRPVVCDHSPGQSPAALAHSFYDAAAGMTRSGRIGQRCSTASVGSIRKFGGQSVVPWELALFLVDEMKGEMVQPGAVVYTAALAECRWAGEQRHVDYILKEMKAEGLNIVPGIPGATNDDPPPSQSPPLFGKLPEPPP--NSATPQHQPGTGGPDQHAAAAAVVEKMQEAARTAEAALATVETMWARAQHDPSPATCRAALDACAAGGQWERALSLVRDAAAAVTVSAGPGASVPSDRTEG-EEGGVPGRVEALALEGRWDDALLLVQGKACSSEGGGDGVE 368
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BLAST of mRNA_P-littoralis_Contig697.16.1 vs. uniprot
Match: D7FTJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ1_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 4.370e-63
Identity = 139/242 (57.44%), Postives = 157/242 (64.88%), Query Frame = 1 
Query:  391 AAMTRAEGLYSR-SAAIVGYTRAFGGQSVVPWELALFLVEEMKAEMVQPGAVVYTAALAECRWAGEQRHVDYLLQEMEAEGLSIVPGIPGATDNELPPSQAPPLFGKLPETPPGMSKSNPQHAPLAAAPTPSTA-VATMQAAARTADAALVTVETMWAREEHDPSPATCRAALDACAAGGQWERALSMVRDAA--MAITADGDAGNSGGGEEEEDLEEGSVSRRVETLALAGKWNKALLLVQ 1104
            A MTR+  +  R S A V   R+FGGQSVVPWELALFLVEEMK EMVQPGAVVYTAALAECRWAGEQRHVDY+L+EM+AEGL+IVPGIPGATD                                          V  MQ AAR A+AAL TVETMWAR +HDPSPATCRAALDACAAGGQWERALS+VRDAA  +A++A+ DA     G      EE  VS RVE LAL G   +   +++
Sbjct:   22 AGMTRSGRIGRRCSIASVDSIRSFGGQSVVPWELALFLVEEMKGEMVQPGAVVYTAALAECRWAGEQRHVDYILEEMKAEGLNIVPGIPGATDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEKMQEAARAAEAALATVETMWARAQHDPSPATCRAALDACAAGGQWERALSLVRDAAAAVAVSAEPDASARRDGTA---AEEDGVSGRVEVLALEGSRGRVRGMLR 260
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig697.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSP6_9PHAE6.700e-9958.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTJ1_ECTSI4.370e-6357.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig697contigP-littoralis_Contig697:87358..89953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1680
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_001580.1
Cds size1101
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791442.7823958-UTR-P-littoralis_Contig697:87357..874261680791442.7823958-UTR-P-littoralis_Contig697:87357..87426Pylaiella littoralis U1_48UTRP-littoralis_Contig697 87358..87426 +
1680791442.8225722-UTR-P-littoralis_Contig697:89443..899531680791442.8225722-UTR-P-littoralis_Contig697:89443..89953Pylaiella littoralis U1_48UTRP-littoralis_Contig697 89444..89953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791442.7941742-CDS-P-littoralis_Contig697:87426..878671680791442.7941742-CDS-P-littoralis_Contig697:87426..87867Pylaiella littoralis U1_48CDSP-littoralis_Contig697 87427..87867 +
1680791442.803978-CDS-P-littoralis_Contig697:88310..884461680791442.803978-CDS-P-littoralis_Contig697:88310..88446Pylaiella littoralis U1_48CDSP-littoralis_Contig697 88311..88446 +
1680791442.813156-CDS-P-littoralis_Contig697:88919..894431680791442.813156-CDS-P-littoralis_Contig697:88919..89443Pylaiella littoralis U1_48CDSP-littoralis_Contig697 88920..89443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig697.16.1prot_P-littoralis_Contig697.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig697 87427..89443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig697.16.1

>prot_P-littoralis_Contig697.16.1 ID=prot_P-littoralis_Contig697.16.1|Name=mRNA_P-littoralis_Contig697.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=367bp
MSSTVRAARQISCRVSPGSFPRVAATRRSRLVKLAAPASSSASNRGRGQH
VCFRPVTCTTYSSTHCNRSSRCSSATFGKVLLLRRAVFDQEFWHMFSQPL
RSLSCGRAAMTRAEGLYSRSAAIVGYTRAFGGQSVVPWELALFLVEEMKA
EMVQPGAVVYTAALAECRWAGEQRHVDYLLQEMEAEGLSIVPGIPGATDN
ELPPSQAPPLFGKLPETPPGMSKSNPQHAPLAAAPTPSTAVATMQAAART
ADAALVTVETMWAREEHDPSPATCRAALDACAAGGQWERALSMVRDAAMA
ITADGDAGNSGGGEEEEDLEEGSVSRRVETLALAGKWNKALLLVQGEEGL
SEHGGAGGEGWKSSEW*
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mRNA from alignment at P-littoralis_Contig697:87358..89953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig697.16.1 ID=mRNA_P-littoralis_Contig697.16.1|Name=mRNA_P-littoralis_Contig697.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2596bp|location=Sequence derived from alignment at P-littoralis_Contig697:87358..89953+ (Pylaiella littoralis U1_48)
CAGCAAAACAGCAGTCGAGAGCAGTAGTCCACATCAGAGGACGGCGGAAG
GAGAACGGCGCAGCGAGACATGTCTAGCACGGTGCGAGCAGCACGGCAGA
TCTCTTGCCGGGTCAGTCCTGGTTCTTTTCCCAGAGTAGCAGCGACTAGG
CGCAGTCGGCTTGTGAAGTTGGCGGCACCGGCTTCGTCCAGCGCATCGAA
TCGCGGGCGCGGCCAACATGTCTGTTTCCGTCCTGTAACGTGCACAACAT
ATTCCAGCACCCACTGCAACAGGAGCAGCCGCTGCAGCAGTGCCACGTTC
GGCAAGGTGCTGCTTCTAAGAAGAGCCGTGTTCGACCAGGAGTTCTGGCA
CATGTTCTCCCAGCCACTGCGGTCTTTATCGTGCGGTCGAGCTGCTATGA
CGAGGGCCGAAGGGCTCTACAGCAGAAGTGCTGCCATCGTGGGCTACACT
CGCGCGTTCGGTGGGCAAAGTGTCGTACCGTGGGAGCTGGCGCTCTTTCT
CGTGGAGGAGGTACGTAAGTGTGTTGGAGGGCGAGGTTGGGTTTGCTGGA
TTTTTCCAGGAAGCCAGCGCTGTTGAAAGCAGTGGTGATATTGTGACATA
ATTTTTTGCCGGTCTCGCACAAGTCACACTAGTAGTGGAGTGCATGTTTT
CAGTAGTCTACGGTGCTGATACGACGTCGGCGTTTTATTCGGGGAAGAAG
CGGCGCACATCTGGCCATTGCCAAGGACGATACCACTGCTCTCGCTGTTG
CTATTGCTGCTGCTGCTGCTGCTACTGCTGCTGTAGTGATCATTTTCCGC
ATGCAGTATGCGTGCCCTGTGGGCTGTCTCTCTCAAAGTCAGCAGTGGGC
TAAACAGGTGGTCGTTGCGCTTCCGACAAATAACACAAGAGCGTGAACTT
GGCACCCCCGTGGAAGTTTTTTACCGTGCGCAAAAATCTCATCGTATTGC
CAGATGAAAGCAGAGATGGTCCAACCGGGGGCCGTGGTTTACACAGCCGC
GTTAGCCGAGTGCCGGTGGGCGGGGGAACAAAGACACGTGGACTACCTCC
TGCAGGAGATGGAAGCCGAGGGACTGAGCATCGTGCCAGGTTCGAGACAC
ATGTTTTGCTTGATATCTGCAACCCTCCGCCAGGTACCGGTAGGTGCAGA
GTGCTCACCATCAATATGAGTGATCTGAGCAGTAGGGTATCACTTGAGGG
CGGTGCAAATGGTACGTGCGATCTGAAGGTGTTCATGAAGGTGCGGGCCC
CATTGCCTGTGCTGGTCGAGCTTGGCTGCGTTTGGTCGTCGGAACAGAAA
TTAAAGCGTCTTCTCCGTCCTGCAGCACGTCACCAAAAAGCACAACAACG
TCACTTTTATAGGTATGAAGAGCTTCCTCAGTCAGCTATACTGTTGTAGC
CCGTGCTGTCTAGTGTTGGAATCAGGAATCGCCTTCAATCCGGGGCCGTA
CGGGTATCCGTACGCTCCTCTCCCCGCCGTCGCACCTCCAGCCTACATAC
CGCCACCCAATCTGAGTTAACCCACCCACCCGCCCACGTACCCATCCACC
CACCCTCCCCAGGCATTCCAGGGGCGACGGACAACGAGCTCCCCCCATCG
CAGGCGCCGCCTTTGTTCGGAAAGCTTCCCGAAACACCGCCGGGCATGAG
TAAAAGCAATCCGCAACACGCCCCCCTCGCGGCTGCTCCTACCCCCAGTA
CCGCCGTTGCGACGATGCAAGCGGCGGCGAGGACGGCAGACGCCGCCTTG
GTCACGGTCGAGACGATGTGGGCGAGGGAGGAGCACGACCCCTCCCCGGC
GACGTGCCGAGCGGCGCTCGACGCGTGCGCGGCAGGCGGGCAGTGGGAGC
GAGCGCTGTCGATGGTTCGGGACGCAGCGATGGCGATAACCGCCGACGGT
GATGCTGGGAATAGCGGTGGCGGTGAGGAGGAGGAGGACCTGGAGGAGGG
GAGTGTTTCTAGGAGGGTGGAGACCCTGGCCCTCGCGGGAAAGTGGAACA
AAGCACTTTTGTTGGTGCAAGGGGAGGAGGGATTGTCGGAGCATGGTGGT
GCCGGGGGTGAGGGCTGGAAGAGTAGTGAGTGGTAGAAATGGAAAAGTCC
TGATGTTGCCTTCGGCGGGTTGCCATGGGAGGGAACCATGCTGCCACCCA
GGTGGCCCTTGTCGGGAGTCAGCAGAGGGAGCCCAAGCGAACAACAAGAA
ATATTTGCTGCGTGTTTTTATTTTTGTTTTGAGCAGGCTGACGAGAGGTG
TTTGGGAACAGAACAAAAGTATGATGAGCTTGCGTTTCTCTTTCCTTTGA
AGTGAGGCTGAGGTTGCAGAGGATGTTTAAGTGGCGTCAGAGAGGCTCGC
GCCGGGATGTTGCGGCCGTACTAATCTGCCTGCAACCTTACCCAGGGGCA
AAGAGTGTTCGGCGTCCTGAAAAAATTCGCCATGTATAGGGGTTTTTTTC
TCGCGGTTTGCCACGCAGACCAGGAGGGAGGCTGTAGTGTGCAGCTCAAG
AGGAGTTTTAAGAAAGGGTCGATGGGTAAATGTTATTGTATTTATGTACG
AACGTAACATATTATAAAATCTTGTTATCGGATGCATTCAATGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig697:87358..89953+

>mRNA_P-littoralis_Contig697.16.1 ID=mRNA_P-littoralis_Contig697.16.1|Name=mRNA_P-littoralis_Contig697.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1101bp|location=Sequence derived from alignment at P-littoralis_Contig697:87358..89953+ (Pylaiella littoralis U1_48)
ATGTCTAGCACGGTGCGAGCAGCACGGCAGATCTCTTGCCGGGTCAGTCC
TGGTTCTTTTCCCAGAGTAGCAGCGACTAGGCGCAGTCGGCTTGTGAAGT
TGGCGGCACCGGCTTCGTCCAGCGCATCGAATCGCGGGCGCGGCCAACAT
GTCTGTTTCCGTCCTGTAACGTGCACAACATATTCCAGCACCCACTGCAA
CAGGAGCAGCCGCTGCAGCAGTGCCACGTTCGGCAAGGTGCTGCTTCTAA
GAAGAGCCGTGTTCGACCAGGAGTTCTGGCACATGTTCTCCCAGCCACTG
CGGTCTTTATCGTGCGGTCGAGCTGCTATGACGAGGGCCGAAGGGCTCTA
CAGCAGAAGTGCTGCCATCGTGGGCTACACTCGCGCGTTCGGTGGGCAAA
GTGTCGTACCGTGGGAGCTGGCGCTCTTTCTCGTGGAGGAGATGAAAGCA
GAGATGGTCCAACCGGGGGCCGTGGTTTACACAGCCGCGTTAGCCGAGTG
CCGGTGGGCGGGGGAACAAAGACACGTGGACTACCTCCTGCAGGAGATGG
AAGCCGAGGGACTGAGCATCGTGCCAGGCATTCCAGGGGCGACGGACAAC
GAGCTCCCCCCATCGCAGGCGCCGCCTTTGTTCGGAAAGCTTCCCGAAAC
ACCGCCGGGCATGAGTAAAAGCAATCCGCAACACGCCCCCCTCGCGGCTG
CTCCTACCCCCAGTACCGCCGTTGCGACGATGCAAGCGGCGGCGAGGACG
GCAGACGCCGCCTTGGTCACGGTCGAGACGATGTGGGCGAGGGAGGAGCA
CGACCCCTCCCCGGCGACGTGCCGAGCGGCGCTCGACGCGTGCGCGGCAG
GCGGGCAGTGGGAGCGAGCGCTGTCGATGGTTCGGGACGCAGCGATGGCG
ATAACCGCCGACGGTGATGCTGGGAATAGCGGTGGCGGTGAGGAGGAGGA
GGACCTGGAGGAGGGGAGTGTTTCTAGGAGGGTGGAGACCCTGGCCCTCG
CGGGAAAGTGGAACAAAGCACTTTTGTTGGTGCAAGGGGAGGAGGGATTG
TCGGAGCATGGTGGTGCCGGGGGTGAGGGCTGGAAGAGTAGTGAGTGGTA
G
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