mRNA_P-littoralis_Contig695.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig695.3.1
Unique NamemRNA_P-littoralis_Contig695.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig695.3.1 vs. uniprot
Match: A0A6H5L0A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A3_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.680e-18
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:    2 RDSVMGTVTISQQAVAEKMVAKFGVTENKETPMVVGLKLEQFDADEPD---------GRLSRAPNKTT*SLYDTSRTI 208
            RD+V+GTVTISQQAVAEK+VAKFGVT +KETPMVVGLKLEQ+DADEPD         G L    N+T   + +  R +
Sbjct:   76 RDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAV 153
[Close]
BLAST of mRNA_P-littoralis_Contig695.3.1 vs. uniprot
Match: A0A6H5JAA4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.510e-18
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 2 
Query:    2 RDSVMGTVTISQQAVAEKMVAKFGVTENKETPMVVGLKLEQFDADEPD 145
            RD+  GTVTISQQAVAEK+VAKFGVT +KETPMVVGLKLEQ+DADEPD
Sbjct:   48 RDTAWGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPD 95
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BLAST of mRNA_P-littoralis_Contig695.3.1 vs. uniprot
Match: A0A6H5JHE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE6_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.080e-18
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:    2 RDSVMGTVTISQQAVAEKMVAKFGVTENKETPMVVGLKLEQFDADEPD---------GRLSRAPNKTT*SLYDTSRTI 208
            RD+V+GTVTISQQAVAEK+VAKFGVT +KETPMVVGLKLEQ+DADEPD         G L    N+T   + +  R +
Sbjct:   48 RDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAV 125
[Close]
BLAST of mRNA_P-littoralis_Contig695.3.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.020e-17
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:    2 RDSVMGTVTISQQAVAEKMVAKFGVTENKETPMVVGLKLEQFDADEPD---------GRLSRAPNKTT*SLYDTSRTI 208
            RD+V+GTVTISQQAVAEK+VAKFGVT +KETPMVVGLKLEQ+DADEPD         G L    N+T   + +  R +
Sbjct:  365 RDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAV 442
[Close]
BLAST of mRNA_P-littoralis_Contig695.3.1 vs. uniprot
Match: A0A6H5L6T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.180e-17
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:    2 RDSVMGTVTISQQAVAEKMVAKFGVTENKETPMVVGLKLEQFDADEPD---------GRLSRAPNKTT*SLYDTSRTI 208
            RD+V+GTVTISQQAVAEK+VAKFGVT +KETPMVVGLKLEQ+DADEPD         G L    N+T   + +  R +
Sbjct:  112 RDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAV 189
[Close]
BLAST of mRNA_P-littoralis_Contig695.3.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.280e-17
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:    2 RDSVMGTVTISQQAVAEKMVAKFGVTENKETPMVVGLKLEQFDADEPD---------GRLSRAPNKTT*SLYDTSRTI 208
            RD+V+GTVTISQQAVAEK+VAKFGVT +KETPMVVGLKLEQ+DADEPD         G L    N+T   + +  R +
Sbjct:  303 RDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAV 380
[Close]
BLAST of mRNA_P-littoralis_Contig695.3.1 vs. uniprot
Match: A0A6H5KFQ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ1_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.320e-17
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:    2 RDSVMGTVTISQQAVAEKMVAKFGVTENKETPMVVGLKLEQFDADEPD---------GRLSRAPNKTT*SLYDTSRTI 208
            RD+V+GTVTISQQAVAEK+VAKFGVT +KETPMVVGLKLEQ+DADEPD         G L    N+T   + +  R +
Sbjct:   76 RDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAV 153
[Close]
BLAST of mRNA_P-littoralis_Contig695.3.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.380e-17
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:    2 RDSVMGTVTISQQAVAEKMVAKFGVTENKETPMVVGLKLEQFDADEPD---------GRLSRAPNKTT*SLYDTSRTI 208
            RD+V+GTVTISQQAVAEK+VAKFGVT +KETPMVVGLKLEQ+DADEPD         G L    N+T   + +  R +
Sbjct:  527 RDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAV 604
[Close]
BLAST of mRNA_P-littoralis_Contig695.3.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.500e-17
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:    2 RDSVMGTVTISQQAVAEKMVAKFGVTENKETPMVVGLKLEQFDADEPD---------GRLSRAPNKTT*SLYDTSRTI 208
            RD+V+GTVTISQQAVAEK+VAKFGVT +KETPMVVGLKLEQ+DADEPD         G L    N+T   + +  R +
Sbjct: 1603 RDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAV 1680
[Close]
BLAST of mRNA_P-littoralis_Contig695.3.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.010e-17
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 2 
Query:    2 RDSVMGTVTISQQAVAEKMVAKFGVTENKETPMVVGLKLEQFDADEPD 145
            RD+V+GTVTISQQAVAEK+VAKFGVT +KETPMVVGLKLEQ+DADEPD
Sbjct:  540 RDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPD 587
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig695.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0A3_9PHAE3.680e-1860.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAA4_9PHAE5.510e-1885.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JHE6_9PHAE6.080e-1860.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK9_9PHAE2.020e-1760.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6T2_9PHAE2.180e-1760.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWG1_9PHAE2.280e-1760.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFQ1_9PHAE2.320e-1760.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGK7_9PHAE2.380e-1760.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAC2_9PHAE2.500e-1760.26Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K0K7_9PHAE6.010e-1787.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig695contigP-littoralis_Contig695:1051..1417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size367
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791440.8096468-UTR-P-littoralis_Contig695:1050..12361680791440.8096468-UTR-P-littoralis_Contig695:1050..1236Pylaiella littoralis U1_48UTRP-littoralis_Contig695 1051..1236 -
1680791440.8327882-UTR-P-littoralis_Contig695:1404..14171680791440.8327882-UTR-P-littoralis_Contig695:1404..1417Pylaiella littoralis U1_48UTRP-littoralis_Contig695 1405..1417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791440.820054-CDS-P-littoralis_Contig695:1236..14041680791440.820054-CDS-P-littoralis_Contig695:1236..1404Pylaiella littoralis U1_48CDSP-littoralis_Contig695 1237..1404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig695.3.1prot_P-littoralis_Contig695.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig695 1237..1404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig695.3.1

>prot_P-littoralis_Contig695.3.1 ID=prot_P-littoralis_Contig695.3.1|Name=mRNA_P-littoralis_Contig695.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
MGTVTISQQAVAEKMVAKFGVTENKETPMVVGLKLEQFDADEPDGRLSRA
PNKTT*
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mRNA from alignment at P-littoralis_Contig695:1051..1417-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig695.3.1 ID=mRNA_P-littoralis_Contig695.3.1|Name=mRNA_P-littoralis_Contig695.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=367bp|location=Sequence derived from alignment at P-littoralis_Contig695:1051..1417- (Pylaiella littoralis U1_48)
TCGTGACTCTGTGATGGGTACTGTTACGATTTCCCAGCAAGCTGTAGCGG
AGAAGATGGTTGCCAAGTTTGGTGTGACGGAGAACAAGGAGACACCCATG
GTTGTCGGCTTGAAGCTTGAGCAATTTGACGCAGACGAACCCGATGGAAG
GCTGTCTCGTGCGCCCAATAAAACAACGTGAAGTTTGTATGATACGTCCC
GTACAATCTGCGGCCCCCGCGGCCACGCAGAAACATCAGTAGTTCGATGC
CGGTGTCCTCTTTTTACCTTGCGCACTGCACAGCAGTTCTGCTGTTTGTT
TAACCCTTTCATGTCTCGTGCGATGCCGCAGCAGCTCCCCGTCCGTGCAA
TTTGTTTTGTCTTCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig695:1051..1417-

>mRNA_P-littoralis_Contig695.3.1 ID=mRNA_P-littoralis_Contig695.3.1|Name=mRNA_P-littoralis_Contig695.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig695:1051..1417- (Pylaiella littoralis U1_48)
ATGGGTACTGTTACGATTTCCCAGCAAGCTGTAGCGGAGAAGATGGTTGC
CAAGTTTGGTGTGACGGAGAACAAGGAGACACCCATGGTTGTCGGCTTGA
AGCTTGAGCAATTTGACGCAGACGAACCCGATGGAAGGCTGTCTCGTGCG
CCCAATAAAACAACGTGA
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