mRNA_P-littoralis_Contig695.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig695.13.1
Unique NamemRNA_P-littoralis_Contig695.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig695.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig695contigP-littoralis_Contig695:36218..36556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791440.7772791-CDS-P-littoralis_Contig695:36217..365561680791440.7772791-CDS-P-littoralis_Contig695:36217..36556Pylaiella littoralis U1_48CDSP-littoralis_Contig695 36218..36556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig695.13.1prot_P-littoralis_Contig695.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig695 36218..36556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig695.13.1

>prot_P-littoralis_Contig695.13.1 ID=prot_P-littoralis_Contig695.13.1|Name=mRNA_P-littoralis_Contig695.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MPSPSTSRRITKRSRYRKAWLPTQRNTTHPCAVSCRWGRVSRRFVSTIFS
LGVMLMIKLRARGIRVNGGVLHLLRLGGSVGYPPNLLTLTFESQRSIVQQ
QHDLGFFLSHCA*
back to top

mRNA from alignment at P-littoralis_Contig695:36218..36556-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig695.13.1 ID=mRNA_P-littoralis_Contig695.13.1|Name=mRNA_P-littoralis_Contig695.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig695:36218..36556- (Pylaiella littoralis U1_48)
ATGCCTTCACCAAGTACTTCGCGGAGAATCACCAAGAGGAGCAGGTATCG
CAAAGCATGGCTGCCCACACAACGGAACACCACCCATCCATGTGCCGTTT
CTTGTAGGTGGGGGAGAGTATCCCGCCGATTTGTATCTACCATTTTCTCT
CTAGGAGTTATGCTGATGATCAAACTCAGAGCACGTGGAATAAGAGTAAA
CGGCGGCGTATTACACTTGTTACGACTGGGTGGTTCAGTTGGTTATCCAC
CCAACCTTCTGACATTGACGTTCGAATCCCAGCGCAGTATTGTACAGCAG
CAACACGATCTGGGTTTTTTTCTCTCACATTGCGCGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig695:36218..36556-

>mRNA_P-littoralis_Contig695.13.1 ID=mRNA_P-littoralis_Contig695.13.1|Name=mRNA_P-littoralis_Contig695.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig695:36218..36556- (Pylaiella littoralis U1_48)
ATGCCTTCACCAAGTACTTCGCGGAGAATCACCAAGAGGAGCAGGTATCG
CAAAGCATGGCTGCCCACACAACGGAACACCACCCATCCATGTGCCGTTT
CTTGTAGGTGGGGGAGAGTATCCCGCCGATTTGTATCTACCATTTTCTCT
CTAGGAGTTATGCTGATGATCAAACTCAGAGCACGTGGAATAAGAGTAAA
CGGCGGCGTATTACACTTGTTACGACTGGGTGGTTCAGTTGGTTATCCAC
CCAACCTTCTGACATTGACGTTCGAATCCCAGCGCAGTATTGTACAGCAG
CAACACGATCTGGGTTTTTTTCTCTCACATTGCGCGTGA
back to top