mRNA_P-littoralis_Contig1175.11.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1175.11.1 vs. uniprot
Match: D7G4D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D5_ECTSI) HSP 1 Score: 157 bits (398), Expect = 8.810e-36 Identity = 364/789 (46.13%), Postives = 388/789 (49.18%), Query Frame = 1
Query: 1 RLRTGAGFGWARAPIIRPAVIRLSSXXXXXXXXXXXGKASEAGQEPVAGAAAGGADATQEEIDRIRGARMTAGQIKVELDALGVSYVGLLEKSEYVQALAEARVSGXXXXXXXXXPP----VEQTEAANPDGTADTSSEASSAGVPKSREP-SATEAGDAMPAADDAVAEAKARLEEDGKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------TXXXXEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-----------------------------EDATPAS-----GLDDGDGDAAPSADPAAXXXXXXXXXX----------------------------------VDEETTKIRDARMTAGQIKAELDILGVSHVGLLEKAEFVTALAEARVAGVGKGAAAEEGNSDAARSDEKEEEAEEASTEQGENNAARGSDVPAASAEVDSTVDAVEQPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTMRISAIKKELDERGVGYRGLLEKTEFVDLLVDARAKGITAPXXXXXXXXXXXXXXXXXXXXADGRSEGVGAKNKDAFDPSYKEVEVKKMNKDPSSXXXXXXXXXXXXXXXMPGGMP-----------------NMGGDXXXXXXXVDIGSILNGLG 1899
R+RT AG GWAR+PI+RP VIRLSS +S G + A GG DA Q EID IR ARMTAGQIKVELDALGVSYVGLLEK+EYV ALAEARVSG XXXXX P DT +A P++ +P SATEAG++MPAADDAVAEAKARLEED KA XXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXX XX E E X E E TPA GDAA +A P VD + KIR+ARMTAGQIKAELD LGV +VGLLEK+EFV LAEARV G GK AA EG S DAVE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S MR+SAIKKELDERGVGYRGL EK+EFVDLLVDARAKGITAP XXXXXXXXXXXXXXX +D D +YK+VEVKKMN DPS XXXXXXXXXXXXXXX GMP NMGG V+I IL+GLG
Sbjct: 61 RVRT-AGVGWARSPIVRPPVIRLSS------------SSSGDGNDGKEAAGGGGPDALQREIDSIREARMTAGQIKVELDALGVSYVGLLEKAEYVLALAEARVSGGXXXXXQTGPAETGDXXXXXXXXXXXEVDTDXXXXAADGPEAGQPPSATEAGESMPAADDAVAEAKARLEEDAKAXXXXXRATEAQAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELKEKLEAXXXXXXXXXXXXXXXXXXXXXXXXXRIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSMDPSGAPNAAEEKEDEVEEVVSPPPEDKEAPPXTPSETDEASARASETPSPXXXXXXXXXXXXXXXXXXXXXXXXTEPGTPAPETXXXXXXXXXGDAAXAATPPQVDEVNGGDATDPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDAQAAKIREARMTAGQIKAELDALGVGYVGLLEKSEFVMKLAEARVDGGGK--AALEGESS----------------------------------------DAVEX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEDAADEVSAMRVSAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAPPPSSSXXXXXXXXXXXXXXXX----------XQDKADAAYKDVEVKKMNSDPSGXXXXXXXXXXXXXXXXXXGMPGXXXXXXXXXXXXXXXXNMGGGGGG----VNINDILSGLG 774
BLAST of mRNA_P-littoralis_Contig1175.11.1 vs. uniprot
Match: A0A6H5KUZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ2_9PHAE) HSP 1 Score: 148 bits (374), Expect = 7.050e-33 Identity = 346/842 (41.09%), Postives = 385/842 (45.72%), Query Frame = 1
Query: 1 RLRTGAGFGWARAPIIRPAVIRLSSXXXXXXXXXXXGKASEAGQEPVAGAAAGGADATQEEIDRIRGARMTAGQIKVELDALGVSYVGLLEKSEYVQALAEARVSGXXXXXXXXXPPVEQT----EAANPDGTADTSSEASSAGVPKSREP-SATEAGDAMPAADDAVAEAKARLEEDGKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------TXXXXEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEED------------------------------------------------------------ATPASGLDDGDGDAAPSADPAAXXXXXXXXXXVDEETTKIRDARMTAGQIKAELDILGVSHVGLLEKAEFVTALAEARVAGVGKGAAAEEGNSDAARSDEKEEEAEEASTEQGENNAARGSDVPAASAEV----------DSTVDAVEQPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTMRISAIKKELDERGVGYRGLLEKTEFVDLLVDARAKGITAPXXXXXXXXXXXXXXXXXXXXADGRSEGVGAKNKDAFDPSYKEVEVKKMNKDPSSXXXXXXXXXXXXXXXMPGGMPNMGGDXXXXXXXVDIGSILNGLGGM 1905
R+RT AG GWAR+PI+RP VIRLS XXXXXXXXXXX + DA Q EID IR ARMTAGQIKVELDALGVSYVGLLEK+EYV ALAEARVS P EA++ G DT + A++A P++ +P SATEAG++MPAADDAVAEAKARLEED KAA XXX XXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX + E E +D ATPA+ DD +G A+ S VDE+ KIR+ARMTAGQIKAELD+LGVS+VGLLEK+EFV LAEARV G G+ A E +SDA +E + A EA E+ + D AVE XXXXXXXXXXXXXXXXXXXXXXXXXXXX S MRISAIKKELDERGVGYRGL EK+EFVDLLVDARAKGITAP XXXXXXXX GV A+ +D D +YK+VEVKKMN DPS XXX XXXXXXX + V+I IL+GLGGM
Sbjct: 23 RVRT-AGVGWARSPIVRPPVIRLSXXXXXXXXXXXXXXXXXS------------PDAFQREIDSIREARMTAGQIKVELDALGVSYVGLLEKAEYVLALAEARVSDGGGDGGQAGPAETGDGAAGEASSXXGETDTDAAAAAADGPEAGQPQSATEAGESMPAADDAVAEAKARLEEDAKAAAAAXXXTEAQAXXXXXXXXARRGAEELRARQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEEALRIEQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQAAKDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSEPSAEGEKEEEKGREVAGEEVSTDTSVAPNAAEEKEEVVSPPLEEKEAPTTAPSGTNEASAPASESPSSDTAEAAAAAQDTAPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETEATPAAADDDAEGQASGSG-------------GVDEQAAKIREARMTAGQIKAELDVLGVSYVGLLEKSEFVMKLAEARVDGGGE-APGEGESSDAVEEEEGQASANEAGGEKSSDTXXXXXXXXXXXXXXXXXXXXXXXXDEGEPAVENKVSSEPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAGEDATDEV-SAMRISAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAPPPSSSGDTXXXXXXXX----------GVSAQAQDKADAAYKDVEVKKMNNDPSGGSGXXXMPXXXXXXXXXXXXXXXXXNMGGGGGGVNINDILSGLGGM 826
BLAST of mRNA_P-littoralis_Contig1175.11.1 vs. uniprot
Match: D7G5M9_ECTSI (STI1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M9_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 2.740e-20 Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 3
Query: 2070 EMIGKVMNNPKAMEAFQKAQGXXXXXXAIQDVTQNGMSAMSNYQDDPEILAVIEELKSIF 2249
+MIGK+MNNPKAMEAFQKAQ XX AIQDVTQNGMSAMS YQDDPEILA+IEELK +F
Sbjct: 26 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 85
BLAST of mRNA_P-littoralis_Contig1175.11.1 vs. uniprot
Match: D7G5D2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D2_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 4.370e-18 Identity = 80/197 (40.61%), Postives = 92/197 (46.70%), Query Frame = 1
Query: 1015 VDEETTKIRDARMTAGQIKAELDILGVSHVGLLEKAEFVTALAEARVAGVGKGAAAEEGNSDAARSDEKEEEAEEASTEQGENNAARGSDVPAASAEVDSTVDAVEQPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTMRISAIKKELDERGVGYRGLLEKTEFVDLLVDARAKGITAP 1605
V KIR+ARMTAGQIKAELD LGVS+V LLEK+EFV LAEA DEK+E+ EEA++ GE DA ++ S M +SAIK+ELDERGV YRGL EK+EFVDLLVDARAKGITAP
Sbjct: 260 VGARAAKIREARMTAGQIKAELDALGVSYVSLLEKSEFVMKLAEAE--------------------DEKKEKXEEAASPAGE--------------------DAADE----------------------------------------------ASAMLVSAIKEELDERGVRYRGLFEKSEFVDLLVDARAKGITAP 370
BLAST of mRNA_P-littoralis_Contig1175.11.1 vs. uniprot
Match: D7G5M8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M8_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 1.210e-12 Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = 1
Query: 1477 STMRISAIKKELDERGVGYRGLLEKTEFVDLLVDARAKGITAP 1605
S MR+SAIK+ELDERGVGYRGL +K+EFVDLLVDARA+GITAP
Sbjct: 20 SAMRVSAIKEELDERGVGYRGLFDKSEFVDLLVDARAEGITAP 62
BLAST of mRNA_P-littoralis_Contig1175.11.1 vs. uniprot
Match: A0A836CC67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC67_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.970e-6 Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 1480 TMRISAIKKELDERGVGYRGLLEKTEFVDLLVDARAKGITAPXXXXXXXXXXXXXXXXXXXXADGRSEGVGAKNKDAFDPSYKEVEVKKMNK 1755
+MR+S IKKEL+ERGV Y GLLEK+EFV L DARA+ T P XXXXXXXXXXXXX K+ + +DPSY++V+V++M K
Sbjct: 124 SMRMSEIKKELEERGVDYSGLLEKSEFVARLADARARNGTKPQQQRSTAXXXXXXXXXXXXXXXXXXXXGRPKDPNEYDPSYRDVKVQRMKK 215
BLAST of mRNA_P-littoralis_Contig1175.11.1 vs. uniprot
Match: A0A7S3JZ43_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZ43_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 4.340e-5 Identity = 27/56 (48.21%), Postives = 32/56 (57.14%), Query Frame = 3
Query: 2082 KVMNNPKAMEAFQKAQGXXXXXXAIQDVTQNGMSAMSNYQDDPEILAVIEELKSIF 2249
K P MEA QKA A+ DV NG+SAMS Y DPEI+A + ELK +F
Sbjct: 44 KAEGKPGMMEALQKAAQNPKLKAAVLDVQANGISAMSKYASDPEIMATLNELKGLF 99 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1175.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1175.11.1 >prot_P-littoralis_Contig1175.11.1 ID=prot_P-littoralis_Contig1175.11.1|Name=mRNA_P-littoralis_Contig1175.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=60bp MIGKVMNNPKAMEAFQKAQGNPKVMAAIQDVTQNGMSAMSNYQDDPEILAback to top mRNA from alignment at P-littoralis_Contig1175:48114..53262- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1175.11.1 ID=mRNA_P-littoralis_Contig1175.11.1|Name=mRNA_P-littoralis_Contig1175.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5149bp|location=Sequence derived from alignment at P-littoralis_Contig1175:48114..53262- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1175:48114..53262- >mRNA_P-littoralis_Contig1175.11.1 ID=mRNA_P-littoralis_Contig1175.11.1|Name=mRNA_P-littoralis_Contig1175.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig1175:48114..53262- (Pylaiella littoralis U1_48)back to top |