mRNA_P-littoralis_Contig694.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig694.35.1
Unique NamemRNA_P-littoralis_Contig694.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig694.35.1 vs. uniprot
Match: Q8QN61_ESV1K (EsV-1-229 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN61_ESV1K)

HSP 1 Score: 169 bits (427), Expect = 3.660e-50
Identity = 87/106 (82.08%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:   85 RIRRQQTYDCFGDQ---ELSPVQALGKLSAVAMLTTARVGLASEDPSMAQARQHLSEVNKRGLVTTDSQMGAKKQITHHSDGHVLNPPLTLWQRSYISGILAKDLG 393
            RIRRQ+ YDCFGDQ   ELSPVQALGKLSAVAMLTT RVG   ED SMAQAR +LSEVNKRGLVTTDSQMGAKK ++HH DGHVLNPP+T WQRSYISGILAK LG
Sbjct:   26 RIRRQRVYDCFGDQGPEELSPVQALGKLSAVAMLTTVRVGDPGEDASMAQARPYLSEVNKRGLVTTDSQMGAKKHLSHHFDGHVLNPPVTQWQRSYISGILAKGLG 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig694.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QN61_ESV1K3.660e-5082.08EsV-1-229 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig694contigP-littoralis_Contig694:135093..135485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size393
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791440.709429-CDS-P-littoralis_Contig694:135092..1354851680791440.709429-CDS-P-littoralis_Contig694:135092..135485Pylaiella littoralis U1_48CDSP-littoralis_Contig694 135093..135485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig694.35.1prot_P-littoralis_Contig694.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig694 135093..135485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig694.35.1

>prot_P-littoralis_Contig694.35.1 ID=prot_P-littoralis_Contig694.35.1|Name=mRNA_P-littoralis_Contig694.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MSSPPGSPPGTPPSQRGRQPPPVRRSSNRIRRQQTYDCFGDQELSPVQAL
GKLSAVAMLTTARVGLASEDPSMAQARQHLSEVNKRGLVTTDSQMGAKKQ
ITHHSDGHVLNPPLTLWQRSYISGILAKDLG
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mRNA from alignment at P-littoralis_Contig694:135093..135485-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig694.35.1 ID=mRNA_P-littoralis_Contig694.35.1|Name=mRNA_P-littoralis_Contig694.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig694:135093..135485- (Pylaiella littoralis U1_48)
ATGTCGTCTCCCCCAGGCTCGCCACCGGGCACGCCTCCGAGCCAGCGCGG
GCGCCAACCTCCGCCTGTGCGACGTAGCAGCAATCGTATCCGAAGGCAGC
AGACCTACGATTGTTTCGGGGACCAGGAATTATCTCCTGTACAGGCGCTT
GGGAAGTTGAGTGCCGTCGCGATGTTGACGACCGCGCGCGTTGGACTTGC
GTCAGAAGACCCGTCGATGGCGCAAGCAAGACAACATTTATCCGAGGTTA
ATAAGAGGGGTCTCGTAACGACAGATTCGCAGATGGGAGCGAAAAAGCAG
ATAACCCACCATTCTGACGGACACGTCCTCAATCCTCCGCTAACACTCTG
GCAACGATCGTACATCAGCGGCATCTTGGCAAAAGACTTGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig694:135093..135485-

>mRNA_P-littoralis_Contig694.35.1 ID=mRNA_P-littoralis_Contig694.35.1|Name=mRNA_P-littoralis_Contig694.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig694:135093..135485- (Pylaiella littoralis U1_48)
ATGTCGTCTCCCCCAGGCTCGCCACCGGGCACGCCTCCGAGCCAGCGCGG
GCGCCAACCTCCGCCTGTGCGACGTAGCAGCAATCGTATCCGAAGGCAGC
AGACCTACGATTGTTTCGGGGACCAGGAATTATCTCCTGTACAGGCGCTT
GGGAAGTTGAGTGCCGTCGCGATGTTGACGACCGCGCGCGTTGGACTTGC
GTCAGAAGACCCGTCGATGGCGCAAGCAAGACAACATTTATCCGAGGTTA
ATAAGAGGGGTCTCGTAACGACAGATTCGCAGATGGGAGCGAAAAAGCAG
ATAACCCACCATTCTGACGGACACGTCCTCAATCCTCCGCTAACACTCTG
GCAACGATCGTACATCAGCGGCATCTTGGCAAAAGACTTGGGG
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