mRNA_P-littoralis_Contig694.23.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig694.23.2 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE) HSP 1 Score: 120 bits (302), Expect = 6.590e-25 Identity = 126/439 (28.70%), Postives = 178/439 (40.55%), Query Frame = 3
Query: 915 ENKNYVLVGYLTSLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRLQQAEAFRDSCSTLPVITTTLWNLGNFKSIFQGTGVVYRLSKVTKARAFQQLGQGTQQVAVGMKEYMHHEDFTGMEKDGSFKGDRPTPVLC----------------------------RWDPQSRGCGAVHPEDGRRRHHHQSDSAFRVL-TPENRGALPRQGSAGRHQERDGEVRVSLECTRENGVGSLSGLGLRTNAE*PQRLRQLGRRLQRRRQXXXXXXSER*RGRQRGGGRDDTWTWG*RRGTGWWGHRRGQWGQSERLARFEEMVGRFAFFLAEGSPFLVFK-AKEVEEREGEMGFVGQWWTPANSSLRAAADTVPFEDYCNTRVTFTSDYVMKPSV---YGGRPTRAPDLGWERVDRVVVWFKNKELNGKGKKFP 2132
ENKN +G+ LV VI VEI FM +GHTH+ IDQ+FS+F+ K ++IFTR Q AE + S + +PV +TL N GNF + QG V R+ +T RAF+ G +V V +K +MH + G+ ++G + P L R+ A +P +R + Q DS R+ T LP + + VR + E+G G G G R R RGR R GR + EE G FAFF+A G+PFLV + A E +R+G G W+ P N R A ++ ++Y TF YVM S G+ + D+ WE V+ +V +L G G+K P
Sbjct: 27 ENKNNFFLGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFSRFSRGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGNEGNFNGLLQGR--VNRVPDITTYRAFRVEKGGDGRVKVRVKHHMHGTECKGIGRNGDVDPNAPPHDLFIGHPPRIQDAPPYELKEVSDEIIRKVEQRYLASHESLAATYPLGAQRAKNEQMDSVRRLKETGLREFDLPVHWLPDDYGGAEAGVRNGNDIEEEDGSG---GPGDRXXXXXXXXXXXXXXXADCFR-----------RGRSRAIGRSAN---------------------DRDVVSIEE--GSFAFFVARGAPFLVGRIAAESVDRDGTRGVDLHWFRPTNDHTRDKAASLTLDEYGER--TFVEGYVMTASDGTRRSGKAKKVKDVSWEPVEGIVATC--DKLVGNGRKIP 422
BLAST of mRNA_P-littoralis_Contig694.23.2 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE) HSP 1 Score: 108 bits (270), Expect = 5.460e-21 Identity = 63/152 (41.45%), Postives = 90/152 (59.21%), Query Frame = 3
Query: 912 GENKNYVLVGYLTSLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRLQQAEAFRDSCSTLPVITTTLWNLGNFKSIFQGTGVVY--RLSKVTKARAFQQLGQGTQQVAVGMKEYMHHEDFTGMEKDGSFKGDRPTPVLCRW 1361
GENKN +++ ++ LV GVIG+ E+ F+ +GHTHI IDQVFS+F+ R IFTR Q E FR+S LPV TL NLGNFK ++ + R+ VTK AF+ +G+ +V+V K +MH + + G+ G + D L R+
Sbjct: 217 GENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGERFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRRIRNVTKFWAFR-VGKVAGEVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRF 367
BLAST of mRNA_P-littoralis_Contig694.23.2 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE) HSP 1 Score: 103 bits (256), Expect = 6.210e-21 Identity = 57/138 (41.30%), Postives = 84/138 (60.87%), Query Frame = 3
Query: 912 GENKNYVLVGYLTSLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRLQQAEAFRDSCSTLPVITTTLWNLGNFKSIFQGTGVVY--RLSKVTKARAFQQLGQGTQQVAVGMKEYMHHEDFTGMEKDG 1319
GENKN +++ ++ LV GVIG+ E+ F+ +GHTHI IDQVFS+F+ R IFTR Q E FR+S LPV TL NLGNFK ++ + ++ +T RAF+ +G+ +V+V K +MH + + + G
Sbjct: 50 GENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFR-VGKVAGEVSVWAKRFMHSDAWLDLTATG 186
BLAST of mRNA_P-littoralis_Contig694.23.2 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.110e-20 Identity = 61/152 (40.13%), Postives = 90/152 (59.21%), Query Frame = 3
Query: 912 GENKNYVLVGYLTSLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRLQQAEAFRDSCSTLPVITTTLWNLGNFKSIFQGTGVVY--RLSKVTKARAFQQLGQGTQQVAVGMKEYMHHEDFTGMEKDGSFKGDRPTPVLCRW 1361
GENKN +++ ++ LV GVIG+ E+ F+ +GHTHI IDQVFS+F+ R IFTR Q E FR+S LPV TL NLGNFK ++ + ++ +T RAF+ +G+ +V+V K +MH + + G+ G + D L R+
Sbjct: 162 GENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFR-VGKVAGEVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRF 312
BLAST of mRNA_P-littoralis_Contig694.23.2 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 7.080e-18 Identity = 61/178 (34.27%), Postives = 90/178 (50.56%), Query Frame = 3
Query: 912 GENKNYVLVGYLTSLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRLQQAEAFRDSCSTLPVITTTLWNLGNFKSIFQGTGVVY----------------------------RLSKVTKARAFQQLGQGTQQVAVGMKEYMHHEDFTGMEKDGSFKGDRPTPVLCRW 1361
GENKN +++ ++ LV GVIG+ E+ F+ +GHTHI IDQVFS+F+ R IFTR Q E FR+S LPV TL NLGNFK ++ + ++ +T RAF+ +G+ +V+V K +MH + + G+ G + D L R+
Sbjct: 50 GENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLXLPLKPTXXXXXXXXXXXXXXXXXXXNLRKIRNITTFRAFR-VGKVAGEVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRF 226
BLAST of mRNA_P-littoralis_Contig694.23.2 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 1.570e-17 Identity = 54/143 (37.76%), Postives = 83/143 (58.04%), Query Frame = 3
Query: 912 GENKNYVLVGYLTSLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRLQQAEAFRDSCSTLPVITTTLWNLGNFKSIFQGTGVVY--RLSKVTKARAFQQLGQGTQQVAVGMKEYMHHEDFTGMEKDGSFKGD 1334
GENKN +++ ++ LV GVIG E+ F+ +GHTHI IDQVFS+ R IFT++Q E FR+S LPV L NLGN K ++ + ++ + RAF+ +G+ +V+V +K +MH + + G+ G + D
Sbjct: 50 GENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSRLFVGTLGRSIFTKIQLGELFRESYKELPVHVGILTNLGNLKGLYLADNKLNLRKIRNIATFRAFR-VGKVAGEVSVWVKRFMHSDAWLGLTATGGARVD 191
BLAST of mRNA_P-littoralis_Contig694.23.2 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 5.110e-15 Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 3
Query: 1092 AEAFRDSCSTLPVITTTLWNLGNFKSIFQGTGVVYRLSKVTKARAFQQLGQGTQQVAVGMKEYMHHEDFTGMEKDGSFKGD 1334
A AF + TLPV TTTL NLGNFK +F VV + +TK+RAFQ L G QV VGMKEYMHHE +TG+ DG F G+
Sbjct: 13 AAAFSAAYKTLPVHTTTLRNLGNFKGVFPPGPVVRNIHGITKSRAFQLLKDGPSQVTVGMKEYMHHEAYTGLTGDGVFAGE 93
BLAST of mRNA_P-littoralis_Contig694.23.2 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 3.070e-12 Identity = 30/43 (69.77%), Postives = 39/43 (90.70%), Query Frame = 3
Query: 915 ENKNYVLVGYLTSLVGRGVIGNVEIQFMPIGHTHILIDQVFSK 1043
ENKN++++GYL SLV +G+IG VE+QFMP+GHTHI IDQVFS+
Sbjct: 24 ENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTHIKIDQVFSR 66 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig694.23.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig694.23.2 >prot_P-littoralis_Contig694.23.2 ID=prot_P-littoralis_Contig694.23.2|Name=mRNA_P-littoralis_Contig694.23.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=234bp MAQTGENKNYVLVGYLTSLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAback to top mRNA from alignment at P-littoralis_Contig694:91555..98619- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig694.23.2 ID=mRNA_P-littoralis_Contig694.23.2|Name=mRNA_P-littoralis_Contig694.23.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=7065bp|location=Sequence derived from alignment at P-littoralis_Contig694:91555..98619- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig694:91555..98619- >mRNA_P-littoralis_Contig694.23.2 ID=mRNA_P-littoralis_Contig694.23.2|Name=mRNA_P-littoralis_Contig694.23.2|organism=Pylaiella littoralis U1_48|type=CDS|length=702bp|location=Sequence derived from alignment at P-littoralis_Contig694:91555..98619- (Pylaiella littoralis U1_48)back to top |