mRNA_P-littoralis_Contig1175.11.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1175.11.2
Unique NamemRNA_P-littoralis_Contig1175.11.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1175.11.2 vs. uniprot
Match: D7G4D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D5_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.090e-33
Identity = 306/674 (45.40%), Postives = 325/674 (48.22%), Query Frame = 1 
Query:    1 RLRTGAGFGWARAPIIRPAVIRLSSXXXXXXXXXXXGKASEAGQEPVAGAAAGGADATQEEIDRIRGARMTAGQIKVELDALGVSYVGLLEKSEYVQALAEARVSGXXXXXXXXXPP----VEQTEAANPDGTADTSSEASSAGVPKSREP-SATEAGDAMPAADDAVAEAKARLEEDGKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------TXXXXEHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-----------------------------EDATPAS-----GLDDGDGDAAPSADPAAXXXXXXXXXX----------------------------------VDEETTKIRDARMTAGQIKAELDILGVSHVGLLEKAEFVTALAEARVAGVGKGAAAEEGNSDAARSDEKEEEAEEASTEQGENNAARGSDVPAASAEVDSTVDAVEQPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTMRISAIKKELDERGVGYRGLLEKTEFVDLLVDARAKGITAP 1605
            R+RT AG GWAR+PI+RP VIRLSS             +S  G +    A  GG DA Q EID IR ARMTAGQIKVELDALGVSYVGLLEK+EYV ALAEARVSG XXXXX   P                  DT     +A  P++ +P SATEAG++MPAADDAVAEAKARLEED KA XXXX         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXXX   XX                                                                       E E                X             E                             E  TPA            GDAA +A P                                              VD +  KIR+ARMTAGQIKAELD LGV +VGLLEK+EFV  LAEARV G GK  AA EG S                                         DAVE       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         S MR+SAIKKELDERGVGYRGL EK+EFVDLLVDARAKGITAP
Sbjct:   61 RVRT-AGVGWARSPIVRPPVIRLSS------------SSSGDGNDGKEAAGGGGPDALQREIDSIREARMTAGQIKVELDALGVSYVGLLEKAEYVLALAEARVSGGXXXXXQTGPAETGDXXXXXXXXXXXEVDTDXXXXAADGPEAGQPPSATEAGESMPAADDAVAEAKARLEEDAKAXXXXXRATEAQAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELKEKLEAXXXXXXXXXXXXXXXXXXXXXXXXXRIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSMDPSGAPNAAEEKEDEVEEVVSPPPEDKEAPPXTPSETDEASARASETPSPXXXXXXXXXXXXXXXXXXXXXXXXTEPGTPAPETXXXXXXXXXGDAAXAATPPQVDEVNGGDATDPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDAQAAKIREARMTAGQIKAELDALGVGYVGLLEKSEFVMKLAEARVDGGGK--AALEGESS----------------------------------------DAVEX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEDAADEVSAMRVSAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAP 673
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BLAST of mRNA_P-littoralis_Contig1175.11.2 vs. uniprot
Match: A0A6H5KUZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ2_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.950e-30
Identity = 110/182 (60.44%), Postives = 125/182 (68.68%), Query Frame = 1 
Query:    1 RLRTGAGFGWARAPIIRPAVIRLSSXXXXXXXXXXXGKASEAGQEPVAGAAAGGADATQEEIDRIRGARMTAGQIKVELDALGVSYVGLLEKSEYVQALAEARVSGXXXXXXXXXPPVEQT----EAANPDGTADTSSEASSAGVPKSREP-SATEAGDAMPAADDAVAEAKARLEEDGKAA 531
            R+RT AG GWAR+PI+RP VIRLS XXXXXXXXXXX     +             DA Q EID IR ARMTAGQIKVELDALGVSYVGLLEK+EYV ALAEARVS          P         EA++  G  DT + A++A  P++ +P SATEAG++MPAADDAVAEAKARLEED KAA
Sbjct:   23 RVRT-AGVGWARSPIVRPPVIRLSXXXXXXXXXXXXXXXXXS------------PDAFQREIDSIREARMTAGQIKVELDALGVSYVGLLEKAEYVLALAEARVSDGGGDGGQAGPAETGDGAAGEASSXXGETDTDAAAAAADGPEAGQPQSATEAGESMPAADDAVAEAKARLEEDAKAA 191
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BLAST of mRNA_P-littoralis_Contig1175.11.2 vs. uniprot
Match: D7G5D2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D2_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.900e-18
Identity = 80/197 (40.61%), Postives = 92/197 (46.70%), Query Frame = 1 
Query: 1015 VDEETTKIRDARMTAGQIKAELDILGVSHVGLLEKAEFVTALAEARVAGVGKGAAAEEGNSDAARSDEKEEEAEEASTEQGENNAARGSDVPAASAEVDSTVDAVEQPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTMRISAIKKELDERGVGYRGLLEKTEFVDLLVDARAKGITAP 1605
            V     KIR+ARMTAGQIKAELD LGVS+V LLEK+EFV  LAEA                     DEK+E+ EEA++  GE                    DA ++                                               S M +SAIK+ELDERGV YRGL EK+EFVDLLVDARAKGITAP
Sbjct:  260 VGARAAKIREARMTAGQIKAELDALGVSYVSLLEKSEFVMKLAEAE--------------------DEKKEKXEEAASPAGE--------------------DAADE----------------------------------------------ASAMLVSAIKEELDERGVRYRGLFEKSEFVDLLVDARAKGITAP 370
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BLAST of mRNA_P-littoralis_Contig1175.11.2 vs. uniprot
Match: D7G5M8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M8_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 7.020e-13
Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = 1 
Query: 1477 STMRISAIKKELDERGVGYRGLLEKTEFVDLLVDARAKGITAP 1605
            S MR+SAIK+ELDERGVGYRGL +K+EFVDLLVDARA+GITAP
Sbjct:   20 SAMRVSAIKEELDERGVGYRGLFDKSEFVDLLVDARAEGITAP 62
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BLAST of mRNA_P-littoralis_Contig1175.11.2 vs. uniprot
Match: A0A836CC67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC67_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.900e-6
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 1 
Query: 1480 TMRISAIKKELDERGVGYRGLLEKTEFVDLLVDARAKGITAPXXXXXXXXXXXXXXXXXXXXADGRSEGVGAKNKDAFDPSYKEVEVR 1743
            +MR+S IKKEL+ERGV Y GLLEK+EFV  L DARA+  T P       XXXXXXXXXXXXX          K+ + +DPSY++V+V+
Sbjct:  124 SMRMSEIKKELEERGVDYSGLLEKSEFVARLADARARNGTKPQQQRSTAXXXXXXXXXXXXXXXXXXXXGRPKDPNEYDPSYRDVKVQ 211
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1175.11.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G4D5_ECTSI2.090e-3345.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUZ2_9PHAE2.950e-3060.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G5D2_ECTSI1.900e-1840.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5M8_ECTSI7.020e-1383.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CC67_9STRA6.900e-654.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1175contigP-littoralis_Contig1175:50802..53262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G4D5
PFAMsBeach,DUF223,DUF4704,ELMO_CED12,Laminin_G_3,PH_BEACH,Rep_fac-A_C
Model size1767
Max annot lvl2759|Eukaryota
KEGG koko:K22262
Hectar predicted targeting categorymitochondrion
Exons2
Evalue3.42e-34
EggNOG OGsKOG1787@1|root,KOG1787@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_007380.1
Descriptionplatelet formation
Cds size1767
COG categoryS
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789491.7885027-CDS-P-littoralis_Contig1175:50801..510951680789491.7885027-CDS-P-littoralis_Contig1175:50801..51095Pylaiella littoralis U1_48CDSP-littoralis_Contig1175 50802..51095 -
1680789491.8005512-CDS-P-littoralis_Contig1175:51789..532621680789491.8005512-CDS-P-littoralis_Contig1175:51789..53262Pylaiella littoralis U1_48CDSP-littoralis_Contig1175 51790..53262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1175.11.2prot_P-littoralis_Contig1175.11.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1175 50802..53262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1175.11.2

>prot_P-littoralis_Contig1175.11.2 ID=prot_P-littoralis_Contig1175.11.2|Name=mRNA_P-littoralis_Contig1175.11.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=589bp
RLRTGAGFGWARAPIIRPAVIRLSSSSSSSSSGNNDGKASEAGQEPVAGA
AAGGADATQEEIDRIRGARMTAGQIKVELDALGVSYVGLLEKSEYVQALA
EARVSGGGGGGRDDSPPVEQTEAANPDGTADTSSEASSAGVPKSREPSAT
EAGDAMPAADDAVAEAKARLEEDGKAAAAKSAKEKQQAEENAAAAAAAAK
AKAEKAQQEVEAAVADAAARAKAKAEAEAKVKQEEQEQAAAAAAKAEQAA
QAKKKEEQAAAAAAATAAAAEHEAQSKQDEEEAPAAAVDPVASEAKAAAT
GAGEEDATPASGLDDGDGDAAPSADPAASSGGGGGSGGVDEETTKIRDAR
MTAGQIKAELDILGVSHVGLLEKAEFVTALAEARVAGVGKGAAAEEGNSD
AARSDEKEEEAEEASTEQGENNAARGSDVPAASAEVDSTVDAVEQPAVEE
PVSSPPSPSPPPPPPAAAAPIKEEKEERVKEDGKKESGEDEVSTMRISAI
KKELDERGVGYRGLLEKTEFVDLLVDARAKGITAPAPAGSSADADADVDA
GAGVGADGRSEGVGAKNKDAFDPSYKEVEVRTDREVKI*
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mRNA from alignment at P-littoralis_Contig1175:50802..53262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1175.11.2 ID=mRNA_P-littoralis_Contig1175.11.2|Name=mRNA_P-littoralis_Contig1175.11.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2461bp|location=Sequence derived from alignment at P-littoralis_Contig1175:50802..53262- (Pylaiella littoralis U1_48)
AGACTGCGCACTGGCGCTGGCTTCGGATGGGCGAGAGCACCGATTATTCG
GCCCGCCGTCATCAGACTCTCCTCCTCGTCCTCCTCTTCCTCTTCTGGCA
ACAACGACGGCAAAGCGAGCGAGGCGGGACAGGAACCGGTTGCGGGCGCA
GCGGCCGGGGGTGCAGACGCCACCCAAGAGGAAATCGATCGCATCCGGGG
AGCGCGAATGACTGCCGGCCAGATCAAGGTCGAACTCGACGCCCTGGGAG
TCAGCTACGTAGGTCTGCTGGAAAAATCCGAATATGTGCAGGCGCTGGCA
GAAGCTCGGGTTTCTGGGGGTGGTGGTGGTGGTAGAGATGACTCACCGCC
TGTAGAGCAGACAGAAGCAGCAAACCCTGACGGCACCGCTGATACTTCCT
CCGAAGCTTCTTCTGCTGGTGTTCCGAAGTCGAGGGAACCATCAGCAACG
GAGGCTGGAGACGCAATGCCTGCGGCAGACGATGCCGTAGCGGAGGCGAA
AGCTAGGCTGGAAGAGGACGGTAAGGCTGCTGCCGCCAAATCTGCGAAGG
AGAAGCAACAGGCGGAAGAAAATGCTGCTGCTGCTGCCGCTGCTGCAAAA
GCCAAAGCTGAGAAGGCCCAACAAGAGGTGGAAGCCGCTGTTGCCGATGC
TGCTGCCAGAGCCAAAGCCAAAGCCGAAGCTGAAGCCAAAGTCAAGCAAG
AGGAGCAGGAACAAGCGGCAGCTGCTGCTGCCAAAGCTGAGCAAGCTGCC
CAAGCCAAAAAGAAGGAGGAGCAAGCTGCCGCCGCCGCTGCTGCTACTGC
TGCTGCGGCTGAGCATGAGGCCCAGTCGAAGCAAGACGAGGAGGAAGCTC
CTGCGGCTGCTGTTGACCCGGTGGCCTCCGAAGCGAAAGCTGCCGCGACG
GGAGCGGGGGAGGAAGACGCCACGCCCGCCTCTGGCTTGGACGACGGTGA
TGGCGATGCCGCACCTAGCGCAGACCCAGCAGCATCAAGCGGCGGCGGCG
GTGGGAGCGGCGGTGTCGACGAAGAGACCACAAAGATACGGGATGCCCGC
ATGACCGCCGGGCAGATAAAGGCGGAGCTCGACATCCTGGGCGTGAGCCA
CGTGGGTCTTTTGGAAAAGGCGGAGTTCGTCACCGCGTTGGCGGAGGCCA
GGGTGGCGGGGGTAGGGAAGGGGGCGGCAGCGGAAGAAGGCAACAGCGAT
GCAGCAAGGAGCGATGAGAAGGAGGAGGAGGCGGAGGAGGCTTCGACCGA
GCAAGGAGAAAATAACGCTGCTCGCGGCAGCGATGTGCCTGCGGCATCCG
CTGAAGTTGACTCGACGGTTGACGCAGTAGAGCAGCCGGCTGTTGAGGAA
CCGGTATCGTCGCCACCATCTCCATCACCACCGCCGCCGCCTCCTGCCGC
TGCGGCTCCCATCAAGGAGGAGAAGGAGGAGAGAGTCAAAGAGGACGGGA
AGAAGGAAAGCGGGGAGGATGAGGTGAGCTGCTTTCTAGATTTCCTTGTA
TTTTTATTTTTGTTTCTCCCATTTCATAGAGCGGTAGAATCGGTTTTCGA
GCTGTTGATGCCCGGTTTGTTTTCTCGTAGAACTAACTGCGTGGGAGGCG
GACCCCACTCCCTCTGCGGCTGCGGAAAACTTGTTTGTGTTGATCGACTG
ATTCGAAAAAAGTCAAAACCAGTAACAGCTGAAAGGCACGGGGCCCTTAA
TCTAGCCCAGAATGCTCAAATAGGAGTTCCCAGTGGGAGAATAAAACGTG
CCGAAAGAAGAGATACAGAGATGAACACGACAAAGAGGAAAGGTGACGGA
AACCGAACCGATTCCGTTCAAATACCCGGAACAACGAATCACCGCTCTGC
AAATTTTTCTTCTGGCGCGATCATAACTCAACCCCCCCCCGATGCCACAA
GCTACCATCCAACTATTGTAAATTCCAATGGAGGTCCGACGCTTCAAACG
CACTGTCGAAGACGTATACTTACACAGCGCCTTAAATAAAAATTCACCCC
GTCGCGAGTAATGACAACGCCGGGTCTTCTCGTCCGTTATGATACGGCAC
AGCCCTAACCCTACACACGCTCTCACACACGCACAAGCACACGCAGCCAC
TCACCCGTACACACCCCGTACACTACATCCCCCCCCCCTCCACAACCGCG
CGCACACACAACCAAAGGTATCCACGATGCGCATCTCGGCGATAAAGAAA
GAGCTGGACGAGCGAGGGGTCGGGTACCGAGGGCTGCTGGAGAAGACCGA
GTTTGTCGACCTCTTGGTCGATGCGAGAGCCAAGGGGATCACGGCGCCTG
CTCCTGCTGGTTCTAGTGCTGATGCCGATGCCGATGTTGATGCTGGTGCC
GGTGTTGGTGCTGATGGTAGATCGGAAGGAGTTGGCGCGAAGAACAAGGA
CGCGTTCGATCCCAGCTACAAAGAGGTCGAGGTACGCACCGACCGTGAAG
TGAAGATCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1175:50802..53262-

>mRNA_P-littoralis_Contig1175.11.2 ID=mRNA_P-littoralis_Contig1175.11.2|Name=mRNA_P-littoralis_Contig1175.11.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1767bp|location=Sequence derived from alignment at P-littoralis_Contig1175:50802..53262- (Pylaiella littoralis U1_48)
AGACTGCGCACTGGCGCTGGCTTCGGATGGGCGAGAGCACCGATTATTCG
GCCCGCCGTCATCAGACTCTCCTCCTCGTCCTCCTCTTCCTCTTCTGGCA
ACAACGACGGCAAAGCGAGCGAGGCGGGACAGGAACCGGTTGCGGGCGCA
GCGGCCGGGGGTGCAGACGCCACCCAAGAGGAAATCGATCGCATCCGGGG
AGCGCGAATGACTGCCGGCCAGATCAAGGTCGAACTCGACGCCCTGGGAG
TCAGCTACGTAGGTCTGCTGGAAAAATCCGAATATGTGCAGGCGCTGGCA
GAAGCTCGGGTTTCTGGGGGTGGTGGTGGTGGTAGAGATGACTCACCGCC
TGTAGAGCAGACAGAAGCAGCAAACCCTGACGGCACCGCTGATACTTCCT
CCGAAGCTTCTTCTGCTGGTGTTCCGAAGTCGAGGGAACCATCAGCAACG
GAGGCTGGAGACGCAATGCCTGCGGCAGACGATGCCGTAGCGGAGGCGAA
AGCTAGGCTGGAAGAGGACGGTAAGGCTGCTGCCGCCAAATCTGCGAAGG
AGAAGCAACAGGCGGAAGAAAATGCTGCTGCTGCTGCCGCTGCTGCAAAA
GCCAAAGCTGAGAAGGCCCAACAAGAGGTGGAAGCCGCTGTTGCCGATGC
TGCTGCCAGAGCCAAAGCCAAAGCCGAAGCTGAAGCCAAAGTCAAGCAAG
AGGAGCAGGAACAAGCGGCAGCTGCTGCTGCCAAAGCTGAGCAAGCTGCC
CAAGCCAAAAAGAAGGAGGAGCAAGCTGCCGCCGCCGCTGCTGCTACTGC
TGCTGCGGCTGAGCATGAGGCCCAGTCGAAGCAAGACGAGGAGGAAGCTC
CTGCGGCTGCTGTTGACCCGGTGGCCTCCGAAGCGAAAGCTGCCGCGACG
GGAGCGGGGGAGGAAGACGCCACGCCCGCCTCTGGCTTGGACGACGGTGA
TGGCGATGCCGCACCTAGCGCAGACCCAGCAGCATCAAGCGGCGGCGGCG
GTGGGAGCGGCGGTGTCGACGAAGAGACCACAAAGATACGGGATGCCCGC
ATGACCGCCGGGCAGATAAAGGCGGAGCTCGACATCCTGGGCGTGAGCCA
CGTGGGTCTTTTGGAAAAGGCGGAGTTCGTCACCGCGTTGGCGGAGGCCA
GGGTGGCGGGGGTAGGGAAGGGGGCGGCAGCGGAAGAAGGCAACAGCGAT
GCAGCAAGGAGCGATGAGAAGGAGGAGGAGGCGGAGGAGGCTTCGACCGA
GCAAGGAGAAAATAACGCTGCTCGCGGCAGCGATGTGCCTGCGGCATCCG
CTGAAGTTGACTCGACGGTTGACGCAGTAGAGCAGCCGGCTGTTGAGGAA
CCGGTATCGTCGCCACCATCTCCATCACCACCGCCGCCGCCTCCTGCCGC
TGCGGCTCCCATCAAGGAGGAGAAGGAGGAGAGAGTCAAAGAGGACGGGA
AGAAGGAAAGCGGGGAGGATGAGGTATCCACGATGCGCATCTCGGCGATA
AAGAAAGAGCTGGACGAGCGAGGGGTCGGGTACCGAGGGCTGCTGGAGAA
GACCGAGTTTGTCGACCTCTTGGTCGATGCGAGAGCCAAGGGGATCACGG
CGCCTGCTCCTGCTGGTTCTAGTGCTGATGCCGATGCCGATGTTGATGCT
GGTGCCGGTGTTGGTGCTGATGGTAGATCGGAAGGAGTTGGCGCGAAGAA
CAAGGACGCGTTCGATCCCAGCTACAAAGAGGTCGAGGTACGCACCGACC
GTGAAGTGAAGATCTGA
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