mRNA_P-littoralis_Contig694.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig694.1.1
Unique NamemRNA_P-littoralis_Contig694.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig694.1.1 vs. uniprot
Match: D8LEV5_ECTSI (Phosphoglycerate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV5_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 6.380e-31
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 GAVSDPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLDVGSSLVEDDKLDL 198
            GAV++PKRPFAAVVGGSKVSSKIGVIDSMLNKVD LVIGGGMVFTFLKARGL VGSSLVEDDKLDL
Sbjct:  270 GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDMLVIGGGMVFTFLKARGLSVGSSLVEDDKLDL 335
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BLAST of mRNA_P-littoralis_Contig694.1.1 vs. uniprot
Match: A0A7S4KJB3_9EUKA (Phosphoglycerate kinase (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4KJB3_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 2.350e-29
Identity = 54/66 (81.82%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 GAVSDPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLDVGSSLVEDDKLDL 198
            GAVS+PKRPFAA+VGGSKVSSKIGVI+S++ KVD++VIGGGMVFTFLKARGL+ GSSLVEDD+L+L
Sbjct:   65 GAVSEPKRPFAAIVGGSKVSSKIGVIESLMEKVDKIVIGGGMVFTFLKARGLETGSSLVEDDQLEL 130
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BLAST of mRNA_P-littoralis_Contig694.1.1 vs. uniprot
Match: A0A835Z2Y0_9STRA (Phosphoglycerate kinase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y0_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.470e-29
Identity = 56/66 (84.85%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 GAVSDPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLDVGSSLVEDDKLDL 198
            GA+++PKRPFAA+VGGSKVSSKIGVI++ML+KVD+LVIGGGMVFTFLKARGL VGSSLVEDD+LDL
Sbjct:  203 GAIAEPKRPFAAIVGGSKVSSKIGVIEAMLDKVDKLVIGGGMVFTFLKARGLSVGSSLVEDDQLDL 268
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BLAST of mRNA_P-littoralis_Contig694.1.1 vs. uniprot
Match: A0A5J4ZAT6_PORPP (Phosphoglycerate kinase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZAT6_PORPP)

HSP 1 Score: 115 bits (288), Expect = 5.910e-29
Identity = 56/66 (84.85%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 GAVSDPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLDVGSSLVEDDKLDL 198
            GAVS+PKRPFAA+VGGSKVSSKIGVI+S++ KVD++VIGGGMVFTFLKARGL+VGSSLVE+DKLDL
Sbjct:  228 GAVSEPKRPFAAIVGGSKVSSKIGVIESLMEKVDKIVIGGGMVFTFLKARGLNVGSSLVEEDKLDL 293
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BLAST of mRNA_P-littoralis_Contig694.1.1 vs. uniprot
Match: Q8GVE7_CHOCR (Phosphoglycerate kinase n=2 Tax=Chondrus crispus TaxID=2769 RepID=Q8GVE7_CHOCR)

HSP 1 Score: 114 bits (286), Expect = 1.290e-28
Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 GAVSDPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLDVGSSLVEDDKLDL 198
            G VSDP RPFAA+VGGSKVSSKIGVIDS+L KVD+L+IGGGMVFTFLKA+GL+VGSSLVEDDKL+L
Sbjct:  240 GTVSDPARPFAAIVGGSKVSSKIGVIDSLLQKVDKLIIGGGMVFTFLKAKGLNVGSSLVEDDKLEL 305
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BLAST of mRNA_P-littoralis_Contig694.1.1 vs. uniprot
Match: UPI00128F17CB (phosphoglycerate kinase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00128F17CB)

HSP 1 Score: 108 bits (270), Expect = 1.360e-28
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 GAVSDPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLDVGSSLVEDDKLDL 198
            GAVS+PKRPFAA+VGGSKVSSKIGVI+S+L KVD L++GGGM+FTF KA+GL VGSSLVE+DKLDL
Sbjct:   26 GAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDL 91
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BLAST of mRNA_P-littoralis_Contig694.1.1 vs. uniprot
Match: A0A7R9UCB1_9STRA (Phosphoglycerate kinase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCB1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.370e-28
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 GAVSDPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLDVGSSLVEDDKLDL 198
            GAV++PKRPFAA+VGGSKVSSKIGVI+SML KVD+L+IGGGMVFTFLKARG  VGSSLVEDDKLDL
Sbjct:  247 GAVAEPKRPFAAIVGGSKVSSKIGVIESMLEKVDKLIIGGGMVFTFLKARGEKVGSSLVEDDKLDL 312
[Close]
BLAST of mRNA_P-littoralis_Contig694.1.1 vs. uniprot
Match: A0A836CNP0_9STRA (Phosphoglycerate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNP0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.740e-28
Identity = 55/66 (83.33%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 GAVSDPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLDVGSSLVEDDKLDL 198
            GA+SDPKRPFAA+VGGSKVSSKIGVI+SML KVD+L+IGGGMVFTFLKARGL+VG+SLVE+D+L+L
Sbjct:  206 GAISDPKRPFAAIVGGSKVSSKIGVIESMLAKVDKLIIGGGMVFTFLKARGLNVGASLVEEDQLEL 271
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BLAST of mRNA_P-littoralis_Contig694.1.1 vs. uniprot
Match: A0A2U1MB35_ARTAN (Phosphoglycerate kinase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MB35_ARTAN)

HSP 1 Score: 109 bits (273), Expect = 3.300e-28
Identity = 53/66 (80.30%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 GAVSDPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLDVGSSLVEDDKLDL 198
            GAVS+PK+PFAA+VGGSKVSSKIGVI+S+LNKVD L++GGGM+FTF KA+GL VGSSLVE+DKLDL
Sbjct:   24 GAVSNPKKPFAAIVGGSKVSSKIGVIESLLNKVDILILGGGMIFTFYKAQGLAVGSSLVEEDKLDL 89
[Close]
BLAST of mRNA_P-littoralis_Contig694.1.1 vs. uniprot
Match: A0A3R7XQ30_9PROT (Phosphoglycerate kinase n=3 Tax=cellular organisms TaxID=131567 RepID=A0A3R7XQ30_9PROT)

HSP 1 Score: 112 bits (281), Expect = 3.630e-28
Identity = 54/66 (81.82%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 GAVSDPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLDVGSSLVEDDKLDL 198
            GAVSDPKRPFAA+VGGSKVSSKIGVI+S++ KVD++VIGGGMVFTFLKARGL+ GSSLVE+D+L+L
Sbjct:  184 GAVSDPKRPFAAIVGGSKVSSKIGVIESLMEKVDKIVIGGGMVFTFLKARGLETGSSLVEEDQLEL 249
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig694.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEV5_ECTSI6.380e-3193.94Phosphoglycerate kinase n=1 Tax=Ectocarpus silicul... [more]
A0A7S4KJB3_9EUKA2.350e-2981.82Phosphoglycerate kinase (Fragment) n=1 Tax=Prymnes... [more]
A0A835Z2Y0_9STRA4.470e-2984.85Phosphoglycerate kinase (Fragment) n=1 Tax=Tribone... [more]
A0A5J4ZAT6_PORPP5.910e-2984.85Phosphoglycerate kinase n=1 Tax=Porphyridium purpu... [more]
Q8GVE7_CHOCR1.290e-2884.85Phosphoglycerate kinase n=2 Tax=Chondrus crispus T... [more]
UPI00128F17CB1.360e-2880.30phosphoglycerate kinase n=1 Tax=Escherichia coli T... [more]
A0A7R9UCB1_9STRA1.370e-2886.36Phosphoglycerate kinase n=1 Tax=Pinguiococcus pyre... [more]
A0A836CNP0_9STRA1.740e-2883.33Phosphoglycerate kinase n=1 Tax=Tribonema minus Ta... [more]
A0A2U1MB35_ARTAN3.300e-2880.30Phosphoglycerate kinase n=1 Tax=Artemisia annua Ta... [more]
A0A3R7XQ30_9PROT3.630e-2881.82Phosphoglycerate kinase n=3 Tax=cellular organisms... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig694contigP-littoralis_Contig694:87..1550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEV5
PFAMsPGK
Model size198
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00043
KEGG koko:K00927
KEGG ReactionR01512
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.05e-31
EggNOG OGsCOG0126@1|root,KOG1367@2759|Eukaryota
EC2.7.2.3
Descriptionphosphoglycerate kinase activity
Cds size198
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791439.490912-CDS-P-littoralis_Contig694:86..1881680791439.490912-CDS-P-littoralis_Contig694:86..188Pylaiella littoralis U1_48CDSP-littoralis_Contig694 87..188 -
1680791439.506846-CDS-P-littoralis_Contig694:1454..15501680791439.506846-CDS-P-littoralis_Contig694:1454..1550Pylaiella littoralis U1_48CDSP-littoralis_Contig694 1455..1550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig694.1.1prot_P-littoralis_Contig694.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig694 87..1550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig694.1.1

>prot_P-littoralis_Contig694.1.1 ID=prot_P-littoralis_Contig694.1.1|Name=mRNA_P-littoralis_Contig694.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=66bp
GAVSDPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKAR
GLDVGSSLVEDDKLDL
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mRNA from alignment at P-littoralis_Contig694:87..1550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig694.1.1 ID=mRNA_P-littoralis_Contig694.1.1|Name=mRNA_P-littoralis_Contig694.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1464bp|location=Sequence derived from alignment at P-littoralis_Contig694:87..1550- (Pylaiella littoralis U1_48)
GGCGCCGTTTCGGACCCCAAGAGGCCCTTCGCGGCCGTCGTCGGCGGATC
CAAGGTTTCCTCCAAGATCGGCGTTATCGACTCCATGCTCAACAAGGTAA
AACGGTCAGCACACACGATACCACATGCCCAACAAGGTTAAACGGGCAAC
ACACGTACAACAGCGTTTGTTCTAGTGTGTGCACAGGCAAACAATAGCAG
CTTTTTTTGTAGTATTTGCACAAACACACAACATCGATTATTTTCGTCAT
TTGATTTTTTGTGTGGACAGGCATACTATAGCAGCTTTTGTACGTGTTTG
CACGGACATTTTGATACAGCACAACATCAGTTTTTTTCGTGTTTGTGCAG
GCATGTGCGTGTTTCCATCCCACCTATTCCGGGCGTCAGTCTGCACTGTT
CGGCATCAATATGTGGGTAAATCAGCCGGGGAGCCGGGGTTAAGTCACGC
AGAAAGATCAAGACGGGATTTTTTTATATTTCTTCTGCATGTATGTACTT
GGGGGAAGTTCTTCGTGCGAAGTACTTGTATGTTTTATTACAAACCTGTG
TCAGGCATGTTTCTTGTCGGCTTCAAAGATTTCCTCCGAGACGAGAGTTA
CCGACTCTATGCTCAACAGTGAAGGTCAGCAGTTTACTGTGTGTGTAGAC
GTTTGTGTTCTTGTTGATTCTTCACATTTAGCTAACAACCATGGTCTAGC
CCGTGGTAACAATATACTTCGTACATGATACCAGGTGGTTTGTGTTTACA
AAATCTTGTTCAGCTTGTTTTTCGCACACAAGCCACTACTCAGTGGTCCG
GTCAAACACCCGACTGACACAATTCAGGCCGCGCCATGTGGCAAATGAAG
GCCTGTTTTGATTTCCTCTGTGAAGGACAGCCCACCTGGCTCTGGGCGGC
CTTCTCTGTTGTTGTTCGGTGTCGTCACATTTTCTCGGAACTTTAGAAAA
CGTATGATATATACGTGTTGAATGTTGATGTTACCGCGGGCTGCACTGCG
ATAACGAGGGCTACGGGTTGGTCTATGTGTGAAACAAGAGGGACGACAAC
GACGAGGCGACGAGACCGTTTTGAACTTGATGACAACGGTCTTCACTACA
TGTCCGATATCGTGAGCTCGCGACAGCAGCAGCAGCAGCAGTAACAACAG
CAACGTTTGACGCATTTTGCGTTGTGCCTTCACTTGTGACGAGCTCTCAA
TGTGTAATAACACAGTAACAACAGACGTTCGATGCAATATTCCCTTCATG
CAAGGTTGACCAAACACCAAGACGACAACGTTCGGATGCAACGTTCTCTT
CGTGCAAGGTTGATCGAACACCAACACAACAACGTTCGGATGCAATATTC
CCTTGATGCAAGGTTGATCGTCTGGTGATTGGAGGAGGCATGGTGTTCAC
CTTCCTGAAGGCGCGGGGGCTGGACGTAGGCTCGTCCCTCGTGGAGGACG
ACAAGCTCGATCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig694:87..1550-

>mRNA_P-littoralis_Contig694.1.1 ID=mRNA_P-littoralis_Contig694.1.1|Name=mRNA_P-littoralis_Contig694.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig694:87..1550- (Pylaiella littoralis U1_48)
GGCGCCGTTTCGGACCCCAAGAGGCCCTTCGCGGCCGTCGTCGGCGGATC
CAAGGTTTCCTCCAAGATCGGCGTTATCGACTCCATGCTCAACAAGGTTG
ATCGTCTGGTGATTGGAGGAGGCATGGTGTTCACCTTCCTGAAGGCGCGG
GGGCTGGACGTAGGCTCGTCCCTCGTGGAGGACGACAAGCTCGATCTC
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