mRNA_P-littoralis_Contig694.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig694.37.1
Unique NamemRNA_P-littoralis_Contig694.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig694.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig694contigP-littoralis_Contig694:137495..138196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size702
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791439.3788354-UTR-P-littoralis_Contig694:137494..1377461680791439.3788354-UTR-P-littoralis_Contig694:137494..137746Pylaiella littoralis U1_48UTRP-littoralis_Contig694 137495..137746 -
1680791439.400584-UTR-P-littoralis_Contig694:138166..1381961680791439.400584-UTR-P-littoralis_Contig694:138166..138196Pylaiella littoralis U1_48UTRP-littoralis_Contig694 138167..138196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791439.3886902-CDS-P-littoralis_Contig694:137746..1381661680791439.3886902-CDS-P-littoralis_Contig694:137746..138166Pylaiella littoralis U1_48CDSP-littoralis_Contig694 137747..138166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig694.37.1prot_P-littoralis_Contig694.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig694 137747..138166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig694.37.1

>prot_P-littoralis_Contig694.37.1 ID=prot_P-littoralis_Contig694.37.1|Name=mRNA_P-littoralis_Contig694.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MESSAKRRRRTKSDGEKSTTSGTAKRARKRERAEEKARSIDPLIKEQGRN
EIQQLNEANNSKNRKRNAAKRMKQEAAAGGATATAAATAASSAAAPPAAP
PSAVSASGYDSTAAGSGDSVAAALPPEPATATTSTAAVA*
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mRNA from alignment at P-littoralis_Contig694:137495..138196-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig694.37.1 ID=mRNA_P-littoralis_Contig694.37.1|Name=mRNA_P-littoralis_Contig694.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=702bp|location=Sequence derived from alignment at P-littoralis_Contig694:137495..138196- (Pylaiella littoralis U1_48)
CAAGAGGGCAGCCCTGGTGGAACAGGAAACATGGAAAGCTCGGCAAAAAG
GCGTAGAAGAACGAAGAGCGACGGAGAAAAGTCAACCACGTCGGGTACGG
CAAAGAGAGCCCGGAAAAGAGAGCGGGCCGAGGAGAAGGCGCGGAGCATT
GATCCGCTTATCAAAGAACAAGGACGCAACGAAATTCAACAATTGAATGA
AGCGAACAATTCAAAAAATCGAAAGAGAAACGCAGCGAAAAGGATGAAGC
AGGAAGCCGCTGCTGGTGGTGCTACTGCTACTGCTGCTGCTACTGCTGCT
TCTTCTGCTGCTGCTCCTCCTGCTGCCCCTCCTTCTGCTGTCTCTGCCAG
CGGTTACGATTCCACCGCTGCTGGCAGCGGTGATTCCGTCGCCGCTGCCC
TCCCCCCCGAGCCTGCTACTGCTACTACTTCCACCGCTGCCGTTGCGTGA
ATCGGCTTGGTTCTGTGAGACGTTTTGTAAGAAATAAATCGTACAGTATC
TTCACTTACGAACGTATTGTCTGCCCGTAGCCAATGGCGCTTGGTTCCGT
ACACGTGCTGTGTGCTCTGCAAGAAGTGCAGCAAGATACTCTTTCGCTTA
GCAGACATGTGAACGGGACGGTTAAAACCACCCTCCACAAAATCACCCAG
AGATTTCAGGGCGAGGTTTGATCGCTCGTTGTCTAAACGCACGAGATCGC
CG
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Coding sequence (CDS) from alignment at P-littoralis_Contig694:137495..138196-

>mRNA_P-littoralis_Contig694.37.1 ID=mRNA_P-littoralis_Contig694.37.1|Name=mRNA_P-littoralis_Contig694.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig694:137495..138196- (Pylaiella littoralis U1_48)
ATGGAAAGCTCGGCAAAAAGGCGTAGAAGAACGAAGAGCGACGGAGAAAA
GTCAACCACGTCGGGTACGGCAAAGAGAGCCCGGAAAAGAGAGCGGGCCG
AGGAGAAGGCGCGGAGCATTGATCCGCTTATCAAAGAACAAGGACGCAAC
GAAATTCAACAATTGAATGAAGCGAACAATTCAAAAAATCGAAAGAGAAA
CGCAGCGAAAAGGATGAAGCAGGAAGCCGCTGCTGGTGGTGCTACTGCTA
CTGCTGCTGCTACTGCTGCTTCTTCTGCTGCTGCTCCTCCTGCTGCCCCT
CCTTCTGCTGTCTCTGCCAGCGGTTACGATTCCACCGCTGCTGGCAGCGG
TGATTCCGTCGCCGCTGCCCTCCCCCCCGAGCCTGCTACTGCTACTACTT
CCACCGCTGCCGTTGCGTGA
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