mRNA_P-littoralis_Contig694.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig694.24.1
Unique NamemRNA_P-littoralis_Contig694.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig694.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig694contigP-littoralis_Contig694:91546..92096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size551
Hectar predicted targeting categoryother localisation
Exons1
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791439.2820683-CDS-P-littoralis_Contig694:91545..920041680791439.2820683-CDS-P-littoralis_Contig694:91545..92004Pylaiella littoralis U1_48CDSP-littoralis_Contig694 91546..92004 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791439.3059022-UTR-P-littoralis_Contig694:92004..920961680791439.3059022-UTR-P-littoralis_Contig694:92004..92096Pylaiella littoralis U1_48UTRP-littoralis_Contig694 92005..92096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig694.24.1prot_P-littoralis_Contig694.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig694 91546..92004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig694.24.1

>prot_P-littoralis_Contig694.24.1 ID=prot_P-littoralis_Contig694.24.1|Name=mRNA_P-littoralis_Contig694.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
MVGRFAFFLAEGSPFLVFKAKEVEEREGEMGFVGQWWTPANSSLRAAADT
VPFEDYCNTRVTFTSDYVMKPSVYGGRPTRAPDLGWERVDRVVVWFKNKE
LNGKGKKFPKIAVDAVSLAFQQRQKEREEEQPRDEGREDESREGEPQIER
AG*
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mRNA from alignment at P-littoralis_Contig694:91546..92096-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig694.24.1 ID=mRNA_P-littoralis_Contig694.24.1|Name=mRNA_P-littoralis_Contig694.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=551bp|location=Sequence derived from alignment at P-littoralis_Contig694:91546..92096- (Pylaiella littoralis U1_48)
CCTGGACCTGGGGGTGAAGGCGTGGCACAGGGTGGTGGGGACATCGAAGA
GGGCAGTGGGGACAAAGTGAGAGGTTGGCTCGGTTCGAAGAGATGGTTGG
CCGTTTCGCATTTTTCTTGGCCGAGGGTAGCCCATTTCTAGTCTTCAAGG
CTAAGGAGGTTGAAGAGCGTGAGGGGGAGATGGGTTTCGTAGGTCAGTGG
TGGACACCCGCCAACAGCTCGCTGAGGGCAGCAGCCGACACTGTTCCATT
CGAGGACTACTGTAACACTAGGGTGACGTTTACCTCGGACTACGTCATGA
AACCTTCTGTTTACGGAGGGCGCCCTACGCGTGCACCCGACCTGGGCTGG
GAGAGGGTGGACAGGGTCGTTGTCTGGTTCAAAAACAAAGAGCTCAACGG
GAAGGGGAAGAAATTTCCAAAAATCGCCGTTGATGCCGTCTCTCTTGCCT
TCCAACAACGTCAAAAGGAGAGGGAGGAAGAACAACCAAGAGATGAGGGC
AGGGAAGACGAGAGCAGGGAGGGGGAACCCCAGATAGAGCGGGCGGGGTA
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig694:91546..92096-

>mRNA_P-littoralis_Contig694.24.1 ID=mRNA_P-littoralis_Contig694.24.1|Name=mRNA_P-littoralis_Contig694.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig694:91546..92096- (Pylaiella littoralis U1_48)
ATGGTTGGCCGTTTCGCATTTTTCTTGGCCGAGGGTAGCCCATTTCTAGT
CTTCAAGGCTAAGGAGGTTGAAGAGCGTGAGGGGGAGATGGGTTTCGTAG
GTCAGTGGTGGACACCCGCCAACAGCTCGCTGAGGGCAGCAGCCGACACT
GTTCCATTCGAGGACTACTGTAACACTAGGGTGACGTTTACCTCGGACTA
CGTCATGAAACCTTCTGTTTACGGAGGGCGCCCTACGCGTGCACCCGACC
TGGGCTGGGAGAGGGTGGACAGGGTCGTTGTCTGGTTCAAAAACAAAGAG
CTCAACGGGAAGGGGAAGAAATTTCCAAAAATCGCCGTTGATGCCGTCTC
TCTTGCCTTCCAACAACGTCAAAAGGAGAGGGAGGAAGAACAACCAAGAG
ATGAGGGCAGGGAAGACGAGAGCAGGGAGGGGGAACCCCAGATAGAGCGG
GCGGGGTAG
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