mRNA_P-littoralis_Contig694.30.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig694.30.3
Unique NamemRNA_P-littoralis_Contig694.30.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig694.30.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig694contigP-littoralis_Contig694:126709..132273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size232
Hectar predicted targeting categoryother localisation
Exons3
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791439.0547893-CDS-P-littoralis_Contig694:126708..1267841680791439.0547893-CDS-P-littoralis_Contig694:126708..126784Pylaiella littoralis U1_48CDSP-littoralis_Contig694 126709..126784 -
1680791439.071919-CDS-P-littoralis_Contig694:127623..1276951680791439.071919-CDS-P-littoralis_Contig694:127623..127695Pylaiella littoralis U1_48CDSP-littoralis_Contig694 127624..127695 -
1680791439.0825226-CDS-P-littoralis_Contig694:132190..1322731680791439.0825226-CDS-P-littoralis_Contig694:132190..132273Pylaiella littoralis U1_48CDSP-littoralis_Contig694 132191..132273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig694.30.3prot_P-littoralis_Contig694.30.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig694 126709..132273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig694.30.3

>prot_P-littoralis_Contig694.30.3 ID=prot_P-littoralis_Contig694.30.3|Name=mRNA_P-littoralis_Contig694.30.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
PVRALYSSTTGSSSNARPSFVQINRGFRNDTERAREADGADPATSQRQRP
DRNDTERAQEADGADPATSQRQRPDR*
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mRNA from alignment at P-littoralis_Contig694:126709..132273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig694.30.3 ID=mRNA_P-littoralis_Contig694.30.3|Name=mRNA_P-littoralis_Contig694.30.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5565bp|location=Sequence derived from alignment at P-littoralis_Contig694:126709..132273- (Pylaiella littoralis U1_48)
CCAGTGCGCGCATTGTACTCAAGCACGACAGGGTCCAGCTCCAACGCGCG
TCCGTCGTTCGTGCAAATCAACCGTGGTTTCAGGTGAGAAGCGGGGAGAC
CGTACTTTCAAACTTCTGATCAGCTTCCAGAACTGTGCAGAAGTGTAGCC
CTGAGATCGCCCAGCTGTAGTTTATTTAGCACGTAGCGCGCAGCCGACGA
ATTCGCGAGACAGGAAGCAATGTGCAACCCCCGTGAAGTTCAGCGCTTGG
ACTGACAAAGCTGGTTTGTTTGCTGCCCACTTATCTTTATTTTCCCAATG
TCGTTCTGCATTTTGCGGCTCCACCCTACTTCTCGAATCGACCAAAACTC
ACAATCCAACTTGCAAGCGGCGGTGGCCTTGGGGCGACCCTGGCATCGAC
CCTGCTCAGTTTCGTGACTTGACAGCGCTCACATGGCACACACATGGCAT
ATGTTGGAGTACTCGAGGCATGAAAGGATATATGTGTGTGTGTGTTGTCA
TCCCTTTAATTGGACGCCACTCTACACCTTTCGGGTAGGTAGACGCTCCA
ACCGGGGTCACACAGTAGGAAGTCAACACAGTTTTGTTTTTGTTTTGTTT
TTTTGTTTTTTGTGTGGCAGTGGATATTGGTTCGCGGAACTCCTCTGTTG
GTTCGCGGAATTCCTCTGTGAGGCTTGGGTTTGGTATTGTGTGTGTTGCA
TTATTCATGCGCATGCGGTTCGGTGTTGGTTCCGCGTGATGTGTTCGCAT
GATTGATCCACAAATTCAACTCAACTCGTATGGATGATCACCTGGGGAAC
GTCAAGTAATACAAACCATCTTCTTTGGGTTCATATCTTCACCTCCTGAC
CGCCGAGAGCACAAAACAGCATACACGGGGGGGTTCCTCGTCGTGTCCGC
ATTTCGGACTCGTCCGAAAATGAAACTTGGGGAGACAAAACCTACTCAAA
CGCTAAAGACTGCCGACAGAAAGTGATTTAATTTAATCCAAAAAAAGTAT
ATTTTCGTTGTTGCTGCAATACCATATTTTGTATTTGTTCCGCAAACTTC
CGTCCTCTCTCCACTCCCCACGGGTCCCTGCTACAATGGCTTCTACCGAC
CGTGACGCACTGGTTGCCCTATACATCGCGACTGACGGGGCTAACTGGAA
CGAAAATGCAAACTGGAACACGGATGCCGACCTCTCGCTATGGCACGGTA
TCGCAGTCAACGACCAGGGTCGTGTGGTGGAGCTAAATCTATCCCGCAAC
AACCTCCTGTCATGGTATTGCACCATTCAAGAGATAGATACCAAGCAAGA
GCGGGTATATCAAGTAGATCTGGCACTGTCAGGTAAGATTCAACGGAACA
TCCCCAAATTGAAGGTTCCGATTCCCAAAACTGAATGCACAGAGAGAATA
GTACGGTATGCAAATACGTTTCCTTTCTGAAAGAGATCAGGTTCGGTTCC
CCAATATAGCTTTAAGAGTGCATTACGCCGTAGATATAAGGCGCGTATCA
GATCCTGTGAGGATGGAACGAACAGGTCATATCTTGTACAGATATGAGAA
GTACCAGAGAGGATCTGTAGTGGAATGACGTAGGAGAACGAAAGCGCGTA
TCAGATCCTGTGAGGATGGAACGAACAGGTCATATCTTGTACAGATATGG
GAAGTACCAGAGATGATCTGTAGTGGAATGACGTAGGAGAACGAAAGTAC
GAGCAGCAGTTGAAGTGGTACTTTGTTGGCAGTTCCCAAAAGTAGAAGTT
GAGCCGTGCGAGCGGAAGCGAGCCCCCGCATGCAACCCGCTTCACGCCCC
CTCTCGCTCACAACCCAATCTGGAGGAGCAAGCGAGAGGGAGCTTAGAAA
CAATCAAGAGAGAAAGGACACATCAGTTCAGCTTGCGTTTGCAGTGATCA
CACCACGTTCGACACGAGAGAATCTCATCACACTCCGAGGTATCTTAAGG
TTTAGTCCATCAAGGCGTGTTGTTTCCTTGCGATGTGCTTGACCTTCCCC
AAGAAGTCGTTAACCGAAAGTGGCCCTTTCATAAAGTTGCAAGTTTTACA
GCAAGGCACAACGTTGTCTTTTTCGTACGCTCACGCGTTCTGCACGCGGT
CTACTCCTGAATACCCCTTGTATGTAAATTCGCTGCAGTACCAACACGCT
GTACGTACGATGCTGCTGTACTCGTCAAAGCTAATCGACACCCTGATATT
TCTCCTACAGGCCTGCTCCTTGAACACGCGCCACCTGTAGACCACACCCG
TTTTCCTGGCTTTAAAGTACTTCTCATATGCGGTGGACCTTCGGTATCGT
TTGTTTTGCAGGGCTCGTATGCGTCGTTTGTCGTACTCTGGTGCGTTCAT
AACCACGAAGCCGTTTCGCACCGGCCCAGTTGGCCCGGACGTTGATTTCC
TTGCCGACATCCATCCATGGTCCCGGATCGCAGCCATGCCTGCGGAAAAG
TTACGTTGCTGGGAAATACACTGCTGTGTGGTGAATGCCAGCCGTGCACT
GTCTGTCTGTAGGCTGGATATTTCCATGGATGTCCATAAATTGTTTTCTA
GCATACTTGTCTCGTAGGTAAATATAGCCCATGTGTCCCTCAACGTGATC
ATACCTTAAACCTTCTAGAGAAAAAGTCTCGGCAACACATATATCGTAGG
TGTTCTAGAGCAATTCATCGATGCCGGCACGTTGGAACTCACCGCTCAGC
TGATTGAAATAAAGGTCGAGTTCTTGCAGAGCGCCCAGGCCCCCAAGTTC
CGGCGGTATAGACCCTGTGGTAGATTCGTGAAAAGTGTAAATTATAAGCC
GAATGCCGCCATTGTATCGATGTTTCGATTTCTAGATAAGTGATGGCCTA
CTCACCGCGGGACTCATCCTGAAAATATTATATGAAATTATCATCAATAC
GTGTACCTAGTGACTCGCCGGTTAGCTGATTTAACGGAAGGCCGAGATTC
TTCACTACTGCGAGGTTTCCCAGCTCCGGCGGTATGGGGCCTGCAGCGAA
CGAGCAAAAACCGAATTGAGCGGGGAAAATAGAATAAAAAATCCCCCGGC
TTCTAGAACATGGCCTACTCACCTATGCCATTGACAGGACTCATTCTTGA
AATTTAACGTTAACAATGTATACCTTGTGACTCACCACTTCGCTCGTTGT
AGTTAAGTTCGAGGTACTCCAGTGCTGCGAGGTTCCCCAGCTCCTGCGGG
ATGGGGCCTGCAAGCCGAAGAAAAAATACTAGTTTAGTGGGCAGTAACAT
AAAACAATTTTCCCGGCTTCTAGAACACCTAATCAACATCGACGTCGGCA
AGTAGGTTACTATATGTTCTAGAAGCATCCTGAAATTTGACCGGGGAGTA
TCAGCACTTATACCTAGTGACTCACCGCTTGGCTGATTTCCGTAAGGTTG
AGGTACGTCAGTGCTGCGAGGTTTCCCAGCTCCGGCGGGATGGTGCCTGT
AGCGAACGAGCAAAAACCGAATTTAGCGGGGAATTAGAAAATTATTCCCC
CCGGCTTCTAGAACATGACCTACTTGCGTGTGCAGGACACATTTATGTTC
TAGAAGCCATGTCACAAGTACTCTACAAAAATAGCTCGGCTAGCTGTGCC
TCACCGGTAAGCTCGTTGTTGCCAAGCCCAACCTGCTCCAGCTTGGCCAG
AGCTCCAAGCTCCTTGGGAATGGCTCCTGTACAACGCAAAAAAGCAGTAC
GGAATGAGAATGAATCAACCGTTGTATGACAGCATTCTCATCATTCTAGA
ACCAATATGTTCCATCCACGAAATGAGGCGTCCAGAACATCGGTCCTGCA
CACGCGTTGACAAGTAGGTGTTCTAGAACCCAGCAGAGAAACTTTCTACG
GATTTCTAGAAGTTTCGGACACTAAATTTCTACCTTTCCTCTGGATTTCT
TGTGCAGGAAGCATCCCGAGGGAGCTGAGAGGGCTGAGCAAGCTGGAGTG
GCTCTTGCTCTCGAACAACAAGCTCACCGGTGAGGGAGCGTGCATGTTTT
TTTTTAATGTTAAATGTTACAAAATGAGTCCTGCACACGCATAGGTGAAG
GACTCACTTTGTAACATTTAACACAAAAAAAAACATGCACGCTCCCTCAC
CGGTGAGCTTGTTGTTCGAGAGCAAGAGCCACTCCAGCTTGCTCAGCCCT
CCCAGCTCCCTCGGGATGCTTCCTGCACAAGAAATCCAGAGGAAAGGTAG
AAATTTAGTATCCGAAACTTCTAGAAATCCGTAGAAAATTTCTCCGCTGG
GTTCTAGAACACCTACTTGTCAACGCATTGACAGGACCCATCCCTGAAAT
ATGATCTGGAAACGCTTGTACCTAGTGACTCACCACTTAGCTCGTTTCCG
TCAAGACAGAGGTACTTCAGTGCTGCGAGGTTCCCCAGCTCTGGTGGGAT
GGTGCCTGCAAGCGGAAGAGAAATACGAATTCAGCGGGCAATAACAAAAT
ACGAAGTATAATTTCCCCGGCTTCTAGAACACCTTCTCACTCATGCATGG
GTTAGTAGGTCATGTTCTAGAGGGCAAGGCACACACATCATCCAATACTC
CCTTAATTTGACTTTCTTGTGTATCCAGGAACGATACCGAGAGAGCTCGG
GAAGCTGACGGCGCTGATCCAGCTACTTCTCAACGGCAACGACCTGACAG
GTGAATGCACAAACTAGTGGCGAGAGCTACACGACTAATTTCGATTCAAG
TAAAAACATTGAGCGGATGAATCCCGCGTACGCGTGTGCAGGACTCATTT
TGTAAAAGTTAAAATAAAAACAAACATGCACGCTCCCTCACCGGTGAGCT
TGTTTTTCGAGAGCCAGAGCCTCTCCAGCTTGCTCAGCCCTCCCAGCTCC
CTCGGGATGCTTCCTGCACAAGAAATCCAGAGAAAAGGTAGAAATTTAGT
ATCCGAAACTTCTAGAAATCCGTAGAAAGTTTCTCCGCTAGAGTTATTGC
CCGCAAAACTAGATTTTTTTCTTCCGCTTTTACTCATTCTTAAAATTGAA
CGTAAAAAATGCTACCTTCTGACGCACCACTTAGTTTGTTGTAGTGGAGT
TCGAGGGACCTAAGTGATGCGAGGTTCCCCAGCTCCGGCGGGATGGGGCC
TGCAAGCGGAAGCAAAAAATCTAATTTAGCGGGCAATAACAAAAAAATAC
TTCCCGGCTTCTAGAACACCTACTTGTCGATGCATCGGCAAGTAGGTGCT
CTAGAAGCCGGGGGATTGTTTTTTATTCCCCGCTAAATTCGGTTTTTGCC
TGTTTGCCACAGGCCACATCCCGCCGGAGCTTGGAAATCTCGCAGCACTG
ACAGTCCTCGATTTTGAGAGAAACAATTTGAACGTGAGTTACTACGTACC
AGGTACATATTTTATGGTATTCCCCACAACAAATGTCAGGATGAATCGCG
CTTACGCATGGGTTAGTAGGTCATGTTCTAGAGGGCAAGGCACACACATC
ATCCAATACTCCCTTAATTTGACTTTCTTGGGTATCCAGGAACGATACCG
AGAGAGCTCAGGAAGCCGACGGCGCTGATCCAGCTACTTCTCAACGGCAA
CGACCTGACAGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig694:126709..132273-

>mRNA_P-littoralis_Contig694.30.3 ID=mRNA_P-littoralis_Contig694.30.3|Name=mRNA_P-littoralis_Contig694.30.3|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig694:126709..132273- (Pylaiella littoralis U1_48)
CCAGTGCGCGCATTGTACTCAAGCACGACAGGGTCCAGCTCCAACGCGCG
TCCGTCGTTCGTGCAAATCAACCGTGGTTTCAGGAACGATACCGAGAGAG
CTCGGGAAGCTGACGGCGCTGATCCAGCTACTTCTCAACGGCAACGACCT
GACAGGAACGATACCGAGAGAGCTCAGGAAGCCGACGGCGCTGATCCAGC
TACTTCTCAACGGCAACGACCTGACAGGTGA
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