mRNA_P-littoralis_Contig693.38.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig693.38.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 117 bits (292), Expect = 4.350e-25 Identity = 95/267 (35.58%), Postives = 131/267 (49.06%), Query Frame = 3
Query: 285 VRALLLDGVTCKDKLNKIGVAPLHLAIRGGHLPVVKALLLAGATAHLRRGPDDDYEPTPENEGALIDVDDDYGYSPLMLAVC*KKNRLAMMKVLLRHGAIVDDGKDMGKSALHHPAMEDDPDAVDLLLEAGASIPNEDGNPTYSPVSSAAVRLAYGMALSLLEHGSKVNVDEHDGETPLALVLSMAQAPGCAKMVDLSLRWGADET-----DTSVADVMSKSDFHDWE--------GDVRRVKKLLANVPADRAWRCRGLPILCRAF 1046
V LL +G K+ L+ G PLHLA+ GHL VKALL A PD N YS L A +K +++ +L+HG V+ D G ++LH A+ + A+D+L+EAGA + ED + +P A + AL+L +HG+ + + GETPL + A G +VD+ LR GADET + A+V+ H E D+ RV+ LL N PADRAWR RGL +LCRAF
Sbjct: 103 VATLLAEGAK-KNGLDAQGRTPLHLAVENGHLSTVKALLAAD--------PDTSVHYRIWNRS----------YSVLDFAA--QKGDACVLRAILQHGVDVNRRTD-GYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDC-TPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVG----HHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAF 342
BLAST of mRNA_P-littoralis_Contig693.38.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 2.110e-18 Identity = 66/176 (37.50%), Postives = 90/176 (51.14%), Query Frame = 3
Query: 555 MKVLLRHGAIVDDGKDMGKSALHHPAMEDDPDAVDLLLEAGASIPN--EDGNPTYSPVSSAAVRLAYGMALSLLEHGSKVNVDEHDGETPLALVLSMAQAPGCAKMVDLSLRWGADETDTS-----VADV--MSKSDFHDWEGDVRRVKKLLANVPADRAWRCRGLPILCRAFPDR 1055
++ L+ HGA VD G +ALHH + +A+D+LL AGA+ + E G+ + R LL+HG+ VN G + L V + A G ++VDL LRWGADET + AD M + + V+KLLAN PADRAWR R +LCRA PD+
Sbjct: 176 IRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDK 351
BLAST of mRNA_P-littoralis_Contig693.38.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 3.920e-16 Identity = 97/324 (29.94%), Postives = 142/324 (43.83%), Query Frame = 3
Query: 186 GQEQFVSDMLLVLPKWHRRETDEGG--NTTLHVAIVRALLLDGVTCKDKLNKIGVAPLHLAIRGGHLPVVKALLLAGATAHLRRGPDDDY---------------------EPTPEN-EGALIDVDDDYGYSPLMLAVC*KKNRLAMMKVLLRHGAIVDDGKDM----GKSALHHPAMEDDPDAVDLLLEAGASIPNED--GNPTY-SPVSSAAVRLAYGMALSLLEHGSKVNVDEHDGETPLALVLSMAQAPGCAKMVDLSLRWGADET-----DTSVADVMSKSDFHDWEGDVRRVKKL--LANVPADRAWRCRGLPILCRA 1043
G E V+ +L D GG N H+ L+ G D+ G PLH A+R G VV LL AGA + G E T E+ G ++ + + + + +A + + ++K L HG VD G +ALH A+++ +AV++LLEAGA E G+P Y +P+ +AA ++ LL +G+ N + +G PL L + Q PG ++VDL LRWGA ET + A+V + H + R L LA PADRAWR RG ++ RA
Sbjct: 49 GNEDLVTRLL-----------DTGGDVNRLDHLGRSTTLISAGADVNDRDPAEGCYPLHAAVRRGCDRVVADLLAAGAAPNNTDGXXXXXXXXXXXXXXXXXXXXXXXXXAEFTFESCAGYVVIASEVFPNAEINVAT--QLGHVGVIKAFLEHG--VDASSQACPASGWTALHQAALDNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLA-AHEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRA 356
BLAST of mRNA_P-littoralis_Contig693.38.1 vs. uniprot
Match: D8LCR2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR2_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 1.030e-14 Identity = 79/242 (32.64%), Postives = 110/242 (45.45%), Query Frame = 3
Query: 375 HLPVVKALLLAGATAHLRRGPDDDYEPTPENEGALIDVDDDYGYSPLMLAVC*KKNRLAMMKVLLRHGAIVDDGKDMGKSALHHPAMEDDPDAVDLLLEAGASIPNE---------DGNPTY---SPVSSAAVRLAYGMALSLLEHG-SKVNVDEHDGETPLALVLSMAQAPGCAKMVDLSLRWGADETDT-----SVADVMSKSDFHD-WEGDVRRVKKLLANVPADRAWRCRGLPILCRA 1043
H+ V KALL AGA ++ D +SPL LA + AM L+ GA V ++G SALH + D VD L+E GA + DG +P+ AA + Y L LL+ G + N + G +PL ++ Q A D+ LR GADET T + AD+M+ S+ H+ W +++LLAN PADRAWR RG ++ RA
Sbjct: 137 HVGVAKALLKAGAGPNV----------------LFTTGDPTVRFSPLYLA----RRNAAMTSALVGMGADVTSVDNIGYSALHWAVRDGRSDVVDALIEVGADVEARTSRMISYYSDGGHCMKGMTPLHEAAYQGNYPGMLVLLQKGRANANAQDEHGHSPLHILCMNPQVCSAAACSDILLRSGADETATDEDRHTPADIMASSEGHNGW------LQQLLANAPADRAWRRRGTLVMLRA 352
BLAST of mRNA_P-littoralis_Contig693.38.1 vs. uniprot
Match: A0A6H5JT17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT17_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 9.680e-14 Identity = 74/251 (29.48%), Postives = 104/251 (41.43%), Query Frame = 3
Query: 321 DKLNKIGVAPLHLAIRGGHLPVVKALLLAGATAHLRRGPDDDYEPTPENEGALIDVDDDYGYSPLMLAVC*KKNRLAMMKVLLRHGAIVDDGKDMGKSALHHPAMEDDPDAVDLLLEAGASIPNEDGNPTYSPVSSAAVRLAYGMALSLLEHGSKVNVDEHDGETPLALVLSMAQAPGCAKMVDLSLRWGADETDTS------VADVMSKSDFHDWEGDVRRVKKLLANVPADRAWRCRGLPILCRAFPDR 1055
D+ N+ G PLH+ + L V +ALL GA ++R G YSPL A+ + AM + LL+HGA E + + + +P+ AA +LL G+ V+ + +G TPL +V + APG K DL L W ADET T A V +S W RV++ LAN PADR WR RG+ ++CRA P +
Sbjct: 157 DRPNREGKYPLHVEVEYNRLTVAEALLTVGANLNVRFGISK-------------------RYSPLYFAL---RRSPAMTRALLQHGA--------------------------ASFEPYHGVCGKHSSVGLTPLHVAAYYHRSLSMAALLRSGANVDAEADNGLTPLHMVCKTSLAPGSVKANDLLLSWDADETTTDHDGRTPKALVSGRSSLR-W-----RVRQKLANAPADRLWRSRGMLVMCRASPQK 353
BLAST of mRNA_P-littoralis_Contig693.38.1 vs. uniprot
Match: D7FYG4_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG4_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 1.930e-11 Identity = 65/202 (32.18%), Postives = 92/202 (45.54%), Query Frame = 3
Query: 576 GAIVDDGKDMGKSALHHPAMEDDPDAVDLLLEAGASIPNED-----GNPTYSPVSSAAVRLA-----YGMALSLLEHGSKVNVDEHDGETPLALVLSMAQAPGCAKMVDLSLRWGADETDT-----SVADVMSKSDFHDWEGDVRRVKKLLANVPADRAWRCRGLPILCRAFP----------------DRCLPEREPEGSC 1088
GA V +G +ALH A + + V L+E GA + +S S ++ +A L+LL+ G+ N + DG PL LV +A A + DL LRWGA+ET T + AD + SD D R+++LLAN PA RAWR RG+ I+ RA RC+P +P +C
Sbjct: 272 GADVKSVDRLGHTALHWAAFDGIQEVVHALVEVGADVEARCLAQLLSEQRHSLKGSTSLHVAAYWETLDTMLALLQKGANANAPDDDGHGPLHLVCKYPKARSVA-VADLLLRWGAEETATDNDGNTPADFIQSSDESDG-----RLQRLLANAPAGRAWRRRGMVIMLRAQGVEASNAAPVYRACRRRGRCVPRMKPRQTC 467
BLAST of mRNA_P-littoralis_Contig693.38.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 6.090e-10 Identity = 84/285 (29.47%), Postives = 117/285 (41.05%), Query Frame = 3
Query: 258 GNTTLHVA------IVRALLLD-GVTCKDKLNKIGVAPLHLAIRGGHLPVVKALLLAGATAHLRRGPDDDYEPTPENEGALIDVDDDYGYSPLMLAVC*KKNRLAMMKVLLRHGAIVDDGKDMGKSALHHPAMEDDPDAVDLLLEAGASIPNEDGNPTYSPVSSAAVRLAYGMAL----SLLEHGSKVNVDEHDGETPLALVLSMAQAPGCAKMVDLSLRWGADE--------TDTSVADVMSKSDFHDWEGDVRRVKKLLANVPADRAWRCRGLPILCRAFPDR 1055
G T LH A +V A+L D T KD L+K G++PL +A + GHL VK LL AGA +R G + + A +HG +ALH + A+D+LL+AGA + + Y + V + +G ++ +LL G +V+ LA M APG +VDL LRWG E T ++ V S +V R LLAN PADRAWR R ++ RA +R
Sbjct: 170 GRTPLHRAAYMGQDMVVAVLTDMPSTDKDILDKSGLSPLTVASQRGHLSTVKTLLNAGADVSMRTGHRNSXXXXXXXXXXXXXXXXXXXXXXXVNAS--------------KHGY----------TALHAGCAMNQAGAMDVLLDAGADMDRK----CYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGPMDKTMLHLAC---MTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSRKAR-EVERAHVLLANAPADRAWRRRSWLVMLRARTER 422
BLAST of mRNA_P-littoralis_Contig693.38.1 vs. uniprot
Match: D7G2K5_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K5_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 6.120e-10 Identity = 77/251 (30.68%), Postives = 102/251 (40.64%), Query Frame = 3
Query: 564 LLRHGAIVDDGKDMGKSALHHPAMED---------------------------------DPDAVDLLLEAGASIP---NEDGNPTYSPVSSAAVRLAYGMALSLLEHGSKVNVDEHDGETPL-ALVLSMAQAPGCAKMVDLSLRWGADETDT--SVADVMSKSDFHDWEGD-VRRVKKLLANVPADRAWRCRGLPILCRAFPDRCL-------------------PEREPEGSCREKQAAWMVPGATGRKR 1139
LLR GA VD G +ALH A E +P ++ LL GA++ +E NP + V S R L+ H S V+ D ET L L L P ++VDL LRWGA + T + + + ++ D ++RV+ LL N PADRAWR RG +LCRAFPDR PE P R +Q A VP AT ++
Sbjct: 81 LLRTGAPVDGKDSQGCTALHVAAAERQLEAMXXXXXXXXXXXXXXXXXXXXXXXXXXXVNPASIIALLGHGAAVDGNADETVNPLFRVVLSE--RPTVEALPPLVRHASDVDAHGVDDETALHRLCLKAMVIPNAPEIVDLLLRWGACKEITCYGLTPLGVLNAYNSMNTDNLKRVRDLLHNAPADRAWRRRGFLVLCRAFPDRMHQNVGNNTPTAHAAVAGEEPPEAHPRSGLRHRQKA--VPAATAARQ 327
BLAST of mRNA_P-littoralis_Contig693.38.1 vs. uniprot
Match: A0A6H5JBC2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 2.730e-9 Identity = 46/128 (35.94%), Postives = 64/128 (50.00%), Query Frame = 3
Query: 714 SPVSSAAVRLAYGMALSLLEHGSKVNVDEHDGETPLALVLSMAQAPGCAKMVDLSLRWGADETDTSVAD-------VMSKSDFHDWEGDVRRVKKLLANVPADRAWRCRGLPILCRAFPDRCLPEREP 1076
+P +AA +L + L+LL+HG+ +N TPL + A G ++VDL LRW ADE D V + +V+RV K L P DRAWR RG+ +LCR P+R + R P
Sbjct: 420 TPRHAAAGKLNFEATLALLKHGADMNALGQTRWTPLHSAVHSAGDEGAVEVVDLLLRWNADEADDDTYGRTPRNLVVRMAPETDRMFVNVQRVWKPLQYAPQDRAWRHRGMLVLCRVHPERLVYGRTP 547
BLAST of mRNA_P-littoralis_Contig693.38.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 1.340e-8 Identity = 53/174 (30.46%), Postives = 76/174 (43.68%), Query Frame = 3
Query: 552 MMKVLLRHGAIVDDGKDMGKSALHHPAMEDDPDAVDLLLEAGASIPNEDGNPTYSPVSSAAVRLAYGMALSLLEHGSKVNVDEHDGETPLALVLSMAQAPGCAKMVDLSLRWGADET-----DTSVADVMSKSDFHDWE-GDVRRVKKLLANVPADRAWRCRGLPILCRAFPDR 1055
++++L+ HG V+ G +ALH A + +A+D+L+ AGA I + + + + Q G ++V L LRWGADET + AD + F E GD R + LL PADRAWR RGL +LC A+PDR
Sbjct: 185 ILRMLIDHGMEVNLAAAFG-TALHWAAKANRANAIDVLVGAGADIQARNMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKVGQRRGSVQVVGLLLRWGADETIVCKQGKTAADRIGTRRFPSTEPGDDERARSLLTRAPADRAWRRRGLLVLCHAYPDR 357 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig693.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig693.38.1 >prot_P-littoralis_Contig693.38.1 ID=prot_P-littoralis_Contig693.38.1|Name=mRNA_P-littoralis_Contig693.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=231bp MMKVLLRHGAIVDDGKDMGKSALHHPAMEDDPDAVDLLLEAGASIPNEDGback to top mRNA from alignment at P-littoralis_Contig693:107705..109650+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig693.38.1 ID=mRNA_P-littoralis_Contig693.38.1|Name=mRNA_P-littoralis_Contig693.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1946bp|location=Sequence derived from alignment at P-littoralis_Contig693:107705..109650+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig693:107705..109650+ >mRNA_P-littoralis_Contig693.38.1 ID=mRNA_P-littoralis_Contig693.38.1|Name=mRNA_P-littoralis_Contig693.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=693bp|location=Sequence derived from alignment at P-littoralis_Contig693:107705..109650+ (Pylaiella littoralis U1_48)back to top |