mRNA_P-littoralis_Contig693.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig693.26.1
Unique NamemRNA_P-littoralis_Contig693.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig693.26.1 vs. uniprot
Match: D8LQA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.430e-19
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 2 
Query:  287 LVGICLMVLYVIWLDHTSQGLVVWLVQGGSPLAEFMPFKLLGDIIVGGDAVEIPGAYA 460
            +VG+CLMVLYV+WLD  SQGL+VWL  GGSPLAE +PFK+LG+++ GGD + IPGAYA
Sbjct:   68 VVGVCLMVLYVVWLDQASQGLLVWL-AGGSPLAELVPFKMLGEMVGGGDEMAIPGAYA 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig693.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQA8_ECTSI1.430e-1968.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig693contigP-littoralis_Contig693:91180..96641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size747
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_005490.1
Cds size525
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791438.1375475-UTR-P-littoralis_Contig693:91179..914011680791438.1375475-UTR-P-littoralis_Contig693:91179..91401Pylaiella littoralis U1_48UTRP-littoralis_Contig693 91180..91401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791438.1530983-CDS-P-littoralis_Contig693:91401..916361680791438.1530983-CDS-P-littoralis_Contig693:91401..91636Pylaiella littoralis U1_48CDSP-littoralis_Contig693 91402..91636 -
1680791438.1733296-CDS-P-littoralis_Contig693:96091..961731680791438.1733296-CDS-P-littoralis_Contig693:96091..96173Pylaiella littoralis U1_48CDSP-littoralis_Contig693 96092..96173 -
1680791438.1837673-CDS-P-littoralis_Contig693:96433..966411680791438.1837673-CDS-P-littoralis_Contig693:96433..96641Pylaiella littoralis U1_48CDSP-littoralis_Contig693 96434..96641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig693.26.1prot_P-littoralis_Contig693.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig693 91402..96641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig693.26.1

>prot_P-littoralis_Contig693.26.1 ID=prot_P-littoralis_Contig693.26.1|Name=mRNA_P-littoralis_Contig693.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
MSYTEESEGEVRHILPGVGDTSGGGGDEAERAAREHSTERYFSVRWMLER
ERAREESDDCSSAFAIIPVGLRSPPRAPCFKLREFRKAWFNNRIAAGRNM
PDGAVRDMARPYIARASRVAGAGGIPAGGVHAIQVARGHYSRRRRSGNPR
GVCMTKMGNRPGCSGSGRCVGVTS*
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mRNA from alignment at P-littoralis_Contig693:91180..96641-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig693.26.1 ID=mRNA_P-littoralis_Contig693.26.1|Name=mRNA_P-littoralis_Contig693.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5462bp|location=Sequence derived from alignment at P-littoralis_Contig693:91180..96641- (Pylaiella littoralis U1_48)
ATGTCTTATACCGAAGAGTCAGAAGGCGAGGTGCGGCATATTTTGCCTGG
GGTGGGAGACACGAGTGGCGGGGGAGGGGACGAAGCGGAGAGGGCGGCGA
GAGAACATTCGACAGAGAGATATTTCTCGGTGCGGTGGATGCTGGAGCGA
GAGCGAGCAAGAGAGGAGTCCGACGACTGCTCCTCGGCTTTTGCTATCAT
TCCAGTCGGTGAGAGGTCTGTCATTCATACCCTCCCTGCCCTTCCTCACC
CTTGACTAGCTCGTATACTTAGCGCTGGGTGGATAAAAAAAGGCAGGCCA
GGAGGATCAGCACGACTCGATCAAAGGGTTGCCAATCACGTTCAAGTTTG
TGTTTCGTTTCGTTATTTGTGGCAACACTTGAAAAACACCTCACTCTATG
AACGGAAACCTCAACCTTGCTTGCACCTTGCTTGCACCTTGCACACCACG
GACGGCTTGCCGAAAAAGGGCTTCGAAGCCCCCCCCGCGCCCCGTGTTTC
AAGCTGCGAGAGTTTCGAAAAGCGTGGTTCAACAACCGCATAGCTGCTGG
GTGAGTTTATCGAGCTCGAGCCTGGGCTCACTTGGTGGGCCCCTCAAACA
CACCAGAACACTCTGGAACTTATGACAAAAAACAAACGAACAGACAGACA
GCTGCTCCGCGGGGGAGGCGTCGAGGTGCAGACCCGAAGATCCTCTCTAG
AGGAGTATCATACGTATTATGTCAGAAGATGACGTCACAGAGTGCGAGCT
CCACCGAGCTCGCCAGAAACGTTCAGCAAGAGCACCACACAACGCAGCCG
ACTCCCGAAGCGGGCAGTTATATCTACAGGGCGCCATTGCCGGTCCTTCC
TGTGGTTGTTGAGTGCGGGGATACTCCTACCTCCTGTATCCTTCAAGGGA
TATTATGCGCTAGATATTATCTTCTTCTCTTCTGTTCAGTACGATAGGAA
TCAATAGTCCGGTCGGTCTGTCCAAATTATTTTTTTTCCAACTTTCCAAC
CCATTTTTTTCTTTTTTTTTTCAATACATCGTTTGTTTCTGTCTTTACAT
TAAAAACCATTCCGATCTCTCCTCAGTACCTTCTAATGTCCGCACTCCAC
CGATCAGGTACGATTTCCGTGGTCACAGGCTGCTTCCCCCACAAGAGGTA
TATAGTACTCGGGAGATCCCCTCAGTCCACCGAATAAAGGCACGACAAGG
AGACTCCGGCAAAAACAAAAACGGACCCCGAGAAATCACACAACGCTGTA
TAAAAATAGAACAAGATACAAGAAAACAAGAAAAGGGAGTCTGCTCCAGA
GCCAAGTCACAAAATGAAATAAAAAAAATAAAAAGTCACAGAGGAGTGAC
AAAAAGGCACAAAAGACTTCAGTTGCCAAGGTGTCGATAAAATTATTCAA
CACAATTGCACACTTTGTACTCGTACGTTCGATTCCGAGGACAAAAACAG
AATCAACACAGGACGTGCGAGCCTCCTCCCTCGTTCGTTCTCGTCATCCT
TCACGAACCAAAAATAATCAGGACTTCGAAGCGCGAGTTGTTGTCTACAT
GCTCACGTCCCTTCACAGCTAAAGGCATGACTTCCGTTGCTGCTGTCGTC
CCTCGAGTCAATGATGCTGGACGTGTGTATGTATGATACGAGGCATGATC
CGTCTCGATCTCGAGCAGATTAGGACAAAGAACATGGCGGTGTCTGCTGC
TTTCTCTCGCTGCTGTACTCGTACACCTACCGTTGACCTGCTCTACGGTG
TATACTTGTACATTTGTTTTTGTACTTCCTTATCTCTCTTGTCCGCCACT
TCTCACAGACTTCTTCAAGAATCGCAACAGCAGTCAGCACTCTGTTTGGG
GTAGACATGCACGCGTATAAAAACAAGCAGGTACAGCTTCAGTCTTCGTA
GAGCCGGTCGGACAAGAAGAATAAAAATTGCGAGACCGAAACACACAGCT
TCATGTGGAATTTCTTTGTTTCCGTTTCTATAATGTTTTACTCCAAATCC
TCTTGTGGAGAGAGGCGAACATCTACATTTTGATGTGCTTGGAGGAAAAT
AAAAATACAGGAATGGAAGGAGGTCTGACTGGTTGGATCAGAAAAAACGC
AGGAGGCGTGGTTTAGCCTTCCACCCCCGGGTGAAACCCAACGGTATTTT
GGACCTTTATTTCGAAAACGAAAAATGAATTGAAAACGGTAGGCTTGTTG
GTGGAGAAGATGTAATTCTGCGAGGCGTCTCCGGTCGACTTTCGCACGGT
AGACAACATCACATGTTGACTTATGTCCCGCTACATGAGGGACGGCATGC
CCTGCTTACTGCGGTGTAAGTGATGGGCTATCACTAACATACCGCATGCG
TGGAGAGGTGGGTTGAGCATTGATTAAGAGTGCTCAAAGGTTTGGGGCAG
TGGGTTATCAAGCGGGACGAGGGAGAATTTTCCAACCTACCCGGCGACGA
CACTTTCGTGTTCGTGGCCGCTTTCCGGTTGAGGTTTGGAAGCAGCTCAG
TTTGTCGTTTTCTCTGATATATCGTCGAAAAATGGACTAGATTCCCCACC
AACTGCGTCTCTGTAAAGATGGGTATAATGCTGTCCGTCGGGAACGTCCA
AGGTTGAGGGCCGGTGGGTGTCGAGCATGACGAGAACCAAGTTCTCAGCC
GTTCGAGAAATTGAAACGACGAACAGTCGATTTGCCTCTTTCGTGTGAGA
GAGGGTTGATTCAAGCTTGTTCCCTATCGCGTTTGACACGTCGTCAGTGC
TCCGAACCTCGGCCTTTTCCGACCGAGGGTAGACATACCCCTCTATGGGT
GCTGTTGGGAGGGAAGGCGCAGTTGGTAGGTCACCTCGTCAGGATTTGGA
CGAGATATCAGTGAAACGTGAACGTTACTACTGTTCAAATGTCGACGCAA
ATGGTGGTGCTCTTGCCCATCCCCTACTTTCCCGCACCCTGGTACCAGGC
CCGTTGTGATAAGCCCCCCCCCCCAAAAAAAAAATTGTTGTTCGTTAATA
TCTTGTTACTACTTCAAGTATTATACTTCGGGAAGTATGTCACAACGGGC
CTTCCTTCATTTTTCGCTCCAAAACAAAATTTATGCCGTTTTCCGGTCCT
GAACTTCGTATGATTTTTTTCCACAGTAAATATGGAGCTTCCCAGCAGTA
CGAGTAGCAGTGCTGAGCCGGGCAAGGATCCCTCTCCCTTGAGCCCCCTC
CCCTTCCCCCCTACCCCACGCCTGCTTCTGCGGCGCACGCCTTCATTTGT
TTAAGTTTATCCCGACGAGGGTCCAACAGCAGCAGCAGTTCTGTATCCCT
CGTGAGTAACAAAGCAAGATTCGAGCCCGTAACCTCCGTCTATCCTCAGA
GGGTTTAAAGCAATCCCCCAGATCCTAAAAACAGGCAGCAATACAGGACC
CCCGATGCAGTTGGAAACGCTATGTTGGCCGAGGCCCGTTGTGCTCGTCA
TTTTGGAAAAGGATTCCTCAACATACGGTCCTCGTAAATTCGGGTGTTTT
TTTCCAGAAATTTCTCATTTTTCATGGAAACCGAGCCTCCCGGGTGGCTT
TTTACCATATACGCGTACCCTGCCAGGCGTTTCGTCCCTGGTGTCGTGTA
CATCACACTATCTCATACCTACTGCTATTGGGGCATTTGTATTCGTTTCA
CCACTTTTCAAACTTGAATCGCAGAATGACGTATCACGCCACCCAATCAC
AGTACATCACATCCCAACAAACACACCGATAAGGATTGGATATCATTGGC
GTCGACCTTCAACTCCCAAGAGTCGTAATACTTCACACCAGGGAGCGAAA
CTATTGATCATTGATTCCTGTTATCGCTCCCACGCCACCAGCTGCTAACG
AGCTTCAAATAATGAAACCAAGGGCCGCAGCAGGGCGTAGGTCCTGAGTA
CGTATGGACCGGGTTGTATGGCGGTGGCATCCTTTCATCTTCTCGTATAT
CGCCAGCCAGCACAGACAAGAAGACGTCGAATTTGGTTTTGTCACTACTG
TCACGTGCGCACACCTTGTTGGGCCCCAATATGGATGACGGCTGTACGAC
CATTAGGATCGAGGTCCGTTGATCACCTGACGATCCGATAGATATCTGGT
TCTTCTTGTTGGTGAGCAACACGCCAGACCTGCGGTTACCCCGTTGCTCA
CCCTACCTTTTGGACTCTCCTTGCTAACTCTACGGGAGAAAACCTTGACC
CTGCCTCCGGTCGTAGGCTTATACGACCAATCCTTGGGACCAACTACGGC
TGCGCCCTCTCACGGTGGCCTAGTTTCATAGTGGCGTCGACGAAGAGATC
CCATTATTTTTTTGCGTTTGGCACGTAAGTACGTCCTGGCGGATTGCAGA
TCTATTATTCGTCACCAGTAGACCGCATCGTCGACGTGTCCTCTTTCTCC
CTTCCTCTATGTCTCTATCCCACTCTCTCCTCCGCGTGTGGGATCGTCCG
TTACGGATGACTTCTTTATTCGCTCATGATTTGAGAGTTACCGTAAGCGC
GTGTGCCCGGTCACACCTACTCTTTCACTCTCTTTCACACATACACGCGC
CGACTGTTGCCACCCTGTGCAACTCCATTCGTTTCGTGTTTTTTATCCGT
AGTATTGTGGCATACAAGCTTTCGGCTCTCGCTGCACTACAACCAAACTT
GCCCATTCCAGAATATCTCGCTCCTCTATTGCTACGCAAATGCTCGAGAT
TATACCCACTGACGACTTGGGCGCTCGATGAACAACAGCATAGCCGATTC
CGATTACCCCGGAGTTGTCATTCAGTGCTCAAGTAGATATTACGAGCACT
TTTTTTTCGGTGTGTCATACGCACGTATTGCCGCGAGCAAGAAGCGAAAT
GTCCGTGTCTCTCATTTCGCGCGCTTGTTTCACTGCCTCCTTTCAGTGTA
CTCACCACGTACCCCCCCCTCCCCCTCTACCCCCTTCCCCCCTTGTTCGT
GCCCGACTTTTTTTTTATGTGTTTGTCGTACTGAATACCGGCGCGTATAA
TGTAGTCGGAATATGCCTGATGGTGCTGTACGTGATATGGCTCGACCATA
CATCGCAAGGGCTAGTCGTGTGGCTGGTGCAGGGGGGATCCCCGCTGGCG
GAGTTCATGCCATTCAAGTTGCTCGGGGACATTATAGTCGGCGGAGACGC
AGTGGAAATCCCCGGGGCGTATGCATGACAAAAATGGGAAATCGGCCCGG
TTGTTCTGGGAGCGGAAGATGCGTGGGTGTGACCTCATGACCATGCACAC
GTTAGGTGGTTGGAGCTGACACCGCGTAGACCCTGGACATCCATCTCCCT
GTGACGTCATGCCCGAATGAAGGAGCATTGAGATTATGTGCACCGACGAT
GCAGCCAACCTGCCGGGACTGGGGGGGGAAGGGAGGTACAAAGGTACACA
GCAGTGGTTCCCGTGGACGTTTGTACCTTCCGTAATGAGGGAGAAGATGG
GACACAGGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig693:91180..96641-

>mRNA_P-littoralis_Contig693.26.1 ID=mRNA_P-littoralis_Contig693.26.1|Name=mRNA_P-littoralis_Contig693.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig693:91180..96641- (Pylaiella littoralis U1_48)
ATGTCTTATACCGAAGAGTCAGAAGGCGAGGTGCGGCATATTTTGCCTGG
GGTGGGAGACACGAGTGGCGGGGGAGGGGACGAAGCGGAGAGGGCGGCGA
GAGAACATTCGACAGAGAGATATTTCTCGGTGCGGTGGATGCTGGAGCGA
GAGCGAGCAAGAGAGGAGTCCGACGACTGCTCCTCGGCTTTTGCTATCAT
TCCAGTCGGGCTTCGAAGCCCCCCCCGCGCCCCGTGTTTCAAGCTGCGAG
AGTTTCGAAAAGCGTGGTTCAACAACCGCATAGCTGCTGGTCGGAATATG
CCTGATGGTGCTGTACGTGATATGGCTCGACCATACATCGCAAGGGCTAG
TCGTGTGGCTGGTGCAGGGGGGATCCCCGCTGGCGGAGTTCATGCCATTC
AAGTTGCTCGGGGACATTATAGTCGGCGGAGACGCAGTGGAAATCCCCGG
GGCGTATGCATGACAAAAATGGGAAATCGGCCCGGTTGTTCTGGGAGCGG
AAGATGCGTGGGTGTGACCTCATGA
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