mRNA_P-littoralis_Contig692.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig692.29.1
Unique NamemRNA_P-littoralis_Contig692.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig692.29.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 4.160e-37
Identity = 83/141 (58.87%), Postives = 99/141 (70.21%), Query Frame = 3 
Query:  318 LQRRLKSPKAEDVQPDETKFSLLEFRKLR---RT---------GMPFLALIARLYNGVESAGCQTKRNFSALPFLIGHLRSSTAPGKIERLMFLRLNRLFIPEIKAFHDAIEAKKAAADRCKERVGQVEAATAGSTFDLRL 704
            ++R L+   AED   +E  FSLLEF + R   RT         G+P LALIARL++G+ES  CQ +RNFSAL FLIG LRSS  PGK+ERLMFLRLNRL+IPE+KA HDA+EA KAAA RC+E+V QVEA  AG    L L
Sbjct:  367 VERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGDAVVLTL 507
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BLAST of mRNA_P-littoralis_Contig692.29.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 3.440e-36
Identity = 83/141 (58.87%), Postives = 99/141 (70.21%), Query Frame = 3 
Query:  318 LQRRLKSPKAEDVQPDETKFSLLEFRKLR---RT---------GMPFLALIARLYNGVESAGCQTKRNFSALPFLIGHLRSSTAPGKIERLMFLRLNRLFIPEIKAFHDAIEAKKAAADRCKERVGQVEAATAGSTFDLRL 704
            ++R L+   AED   +E  FSLLEF + R   RT         G+P LALIARL++G+ES  CQ +RNFSAL FLIG LRSS  PGK+ERLMFLRLNRL+IPE+KA HDA+EA KAAA RC+E+V QVEA  AG    L L
Sbjct:  695 VERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGDAVVLTL 835
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BLAST of mRNA_P-littoralis_Contig692.29.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.540e-15
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  414 MPFLALIARLYNGVESAGCQTKRNFSALPFLIGHLRSSTAPGKIERLMFLRLNRLFIPEIKAFHDAIEAKKAAADRCKERVGQVEAATAGSTFDLRL 704
            MP+LA IARLY G+E+  CQ +RNFSAL  LIG LR +  P K+ER+MF+RLNR  + E++    A+   KAA  +  +     +   A  T DL L
Sbjct:  555 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQEERANQTVDLCL 651
[Close]
BLAST of mRNA_P-littoralis_Contig692.29.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.790e-15
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  414 MPFLALIARLYNGVESAGCQTKRNFSALPFLIGHLRSSTAPGKIERLMFLRLNRLFIPEIKAFHDAIEAKKAAADRCKERVGQVEAATAGSTFDLRL 704
            MP+LA IARLY G+E+  CQ +RNFSAL  LIG LR +  P K+ER+MF+RLNR  + E++    A+   KAA  +  +     +   A  T DL L
Sbjct:  750 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQEERANQTVDLCL 846
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig692.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE4.160e-3758.87Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE3.440e-3658.87Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JTB8_9PHAE2.540e-1545.36Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE2.790e-1545.36Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig692contigP-littoralis_Contig692:118409..119251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size843
Hectar predicted targeting categorymitochondrion
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791436.732004-UTR-P-littoralis_Contig692:118408..1188481680791436.732004-UTR-P-littoralis_Contig692:118408..118848Pylaiella littoralis U1_48UTRP-littoralis_Contig692 118409..118848 -
1680791436.7573256-UTR-P-littoralis_Contig692:119211..1192511680791436.7573256-UTR-P-littoralis_Contig692:119211..119251Pylaiella littoralis U1_48UTRP-littoralis_Contig692 119212..119251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791436.745701-CDS-P-littoralis_Contig692:118848..1192111680791436.745701-CDS-P-littoralis_Contig692:118848..119211Pylaiella littoralis U1_48CDSP-littoralis_Contig692 118849..119211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig692.29.1prot_P-littoralis_Contig692.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig692 118849..119211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig692.29.1

>prot_P-littoralis_Contig692.29.1 ID=prot_P-littoralis_Contig692.29.1|Name=mRNA_P-littoralis_Contig692.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MANLQHRQSVHRMARRSRSRLSRRKLASKRQGRGFGKMHEFVPVVAGKNV
ICSVCKHLMAWKAKSGPNGMITYFKNKHPTLYKAVTEVDTTTAAAKVKVA
QGGRRATRRDQVFSSRVSEA*
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mRNA from alignment at P-littoralis_Contig692:118409..119251-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig692.29.1 ID=mRNA_P-littoralis_Contig692.29.1|Name=mRNA_P-littoralis_Contig692.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=843bp|location=Sequence derived from alignment at P-littoralis_Contig692:118409..119251- (Pylaiella littoralis U1_48)
GGTGAGGATGACAGTCCCGTCCTAGCAGGGGTGGTTGGTGATGGCAAACC
TCCAACACAGACAGTCCGTACACAGAATGGCACGCCGGTCACGGTCACGG
TTGTCCCGGCGAAAGCTGGCCAGCAAGCGACAAGGTCGTGGATTTGGCAA
GATGCACGAGTTTGTTCCTGTCGTCGCCGGAAAAAACGTCATCTGTTCGG
TGTGCAAACACTTGATGGCCTGGAAAGCGAAGAGCGGACCGAACGGTATG
ATCACGTACTTCAAGAACAAGCACCCAACGCTGTACAAGGCGGTTACGGA
GGTGGACACTACCACCGCTGCAGCGAAGGTTAAAGTCGCCCAAGGCGGAA
GACGTGCAACCCGACGAGACCAAGTTTTCTCTTCTAGAGTTTCGGAAGCT
TAGGAGGACAGGAATGCCGTTTTTGGCGCTGATCGCCCGGCTTTACAACG
GGGTTGAGTCTGCCGGTTGCCAGACGAAGAGGAACTTCTCAGCTCTTCCC
TTCCTTATCGGCCACCTGCGCAGCTCGACCGCACCCGGCAAGATCGAGCG
ACTGATGTTCCTGCGCCTCAACAGGCTATTCATCCCGGAGATCAAGGCTT
TCCACGACGCCATCGAAGCGAAGAAAGCAGCGGCAGACCGGTGCAAGGAA
AGAGTTGGGCAAGTAGAGGCAGCAACAGCGGGCTCGACTTTTGACTTGAG
GCTATGATTCTGCTGTGTGCCGTTTACGATCATATCATACGAAGTAAAAT
ATGGGTGTGTTGAAACCGCCGTTTTGCAGACGTTACAGCTGCCCCATCCC
CCAACCCTCTTATATGTTGTTGTTATGTTTTGCATTACCTCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig692:118409..119251-

>mRNA_P-littoralis_Contig692.29.1 ID=mRNA_P-littoralis_Contig692.29.1|Name=mRNA_P-littoralis_Contig692.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig692:118409..119251- (Pylaiella littoralis U1_48)
ATGGCAAACCTCCAACACAGACAGTCCGTACACAGAATGGCACGCCGGTC
ACGGTCACGGTTGTCCCGGCGAAAGCTGGCCAGCAAGCGACAAGGTCGTG
GATTTGGCAAGATGCACGAGTTTGTTCCTGTCGTCGCCGGAAAAAACGTC
ATCTGTTCGGTGTGCAAACACTTGATGGCCTGGAAAGCGAAGAGCGGACC
GAACGGTATGATCACGTACTTCAAGAACAAGCACCCAACGCTGTACAAGG
CGGTTACGGAGGTGGACACTACCACCGCTGCAGCGAAGGTTAAAGTCGCC
CAAGGCGGAAGACGTGCAACCCGACGAGACCAAGTTTTCTCTTCTAGAGT
TTCGGAAGCTTAG
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