mRNA_P-littoralis_Contig692.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig692.15.1
Unique NamemRNA_P-littoralis_Contig692.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig692.15.1 vs. uniprot
Match: A0A6H5JDY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.370e-19
Identity = 59/136 (43.38%), Postives = 77/136 (56.62%), Query Frame = 1 
Query:   13 NAIHPFEFMSGSIPTMLWEDGIALLGGDDSKS-GAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRARKAKKVPEDFGVFRAGVEELVAKMSEAVDHEIRRGETDVGDGNLTRLEQL 417
            NA HPF+FM GS+PTMLWEDGI L GG D +S   G+ ++PD HPGSGSSVPGGPGVR   E          T ++ S     ++ +K K   +D     A  +E+VA   +A + E+R  E   GD    R + L
Sbjct:  118 NARHPFQFMRGSLPTMLWEDGIELSGGGDDESYRPGDIVLPDGHPGSGSSVPGGPGVRGRGE---------ATPARSSGNTNSRKHKKPKTGSDDRAELVADTKEVVALWRKAAEQEVRGDEPAFGDTEKDRAKDL 244
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BLAST of mRNA_P-littoralis_Contig692.15.1 vs. uniprot
Match: A0A6H5JXW8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.420e-18
Identity = 62/158 (39.24%), Postives = 86/158 (54.43%), Query Frame = 1 
Query:   13 NAIHPFEFMSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRARKAKKVPEDFGVFRAGVEELVAKMSEAVDHEIRRGETDVGDGNLTRLEQLT-----DKTRSLKEKIAAAEAD 468
            NA HPF+FM GS+PTMLWEDGI L GG DD     G+ ++PD HPGSGSSVPGGPGVR   E          T ++ S     ++ +K K   +D     A  +E++A   +A + E R  +  +GD    R + L      D  + L+ K+ +A +D
Sbjct:  200 NARHPFQFMRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSVPGGPGVRGRGE---------ATPARSSGNTNSRKHKKPKTGSDDRAELVADTKEVIALWRKAAEQEERGDKPAIGDIEKDRAKDLAMEGFIDDVQRLQAKVDSASSD 348
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BLAST of mRNA_P-littoralis_Contig692.15.1 vs. uniprot
Match: A0A6H5JRU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.630e-18
Identity = 62/158 (39.24%), Postives = 85/158 (53.80%), Query Frame = 1 
Query:   13 NAIHPFEFMSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRARKAKKVPEDFGVFRAGVEELVAKMSEAVDHEIRRGETDVGDGNLTRLEQLT-----DKTRSLKEKIAAAEAD 468
            NA HPF+FM GS+PTMLWEDGI L GG DD     G+ ++PD HPGSGSSVPGGPGVR   E          T ++ S     ++ +K K   +D     A  +E++A   +A + E R  +   GD    R + L      D  + L+ K+ +A +D
Sbjct:  563 NARHPFQFMRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSVPGGPGVRGRGE---------ATPARSSGNTNSRKHKKPKTGSDDRAELVADTKEVIALWRKAAEQEERGDKPAFGDIEKDRAKDLAMEGFIDDVQRLQAKVDSASSD 711
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BLAST of mRNA_P-littoralis_Contig692.15.1 vs. uniprot
Match: A0A6H5KYJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 7.220e-15
Identity = 53/127 (41.73%), Postives = 70/127 (55.12%), Query Frame = 1 
Query:   13 NAIHPFEFMSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRARKAKKVPEDFGVFRAGVEELVAKMSEAVDHEIRRGETDVGD 390
            NA +PF+FM G++P MLWEDGI L GG DD      + ++PD HPGSGSSVPGGPGVR        G  + T  S        K  +K K   +D     A  +E++A   +A + E+RR +   GD
Sbjct:  200 NAHNPFQFMRGALPAMLWEDGIDLSGGGDDETYRPSDIVLPDGHPGSGSSVPGGPGVR--------GRGEATPASSAGNTNSRKH-KKPKTGSDDRAELIADTKEVIALWRKAREQEVRREDPAFGD 317
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BLAST of mRNA_P-littoralis_Contig692.15.1 vs. uniprot
Match: A0A6H5JPA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.570e-14
Identity = 55/147 (37.41%), Postives = 77/147 (52.38%), Query Frame = 1 
Query:   37 MSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRARKAKKVPEDFGVFRAGVEELVAKMSEAVDHEIRRGETDVGDGNLTRLEQLT-----DKTRSLKEKIAAA 459
            M GS+PTMLWEDGI L GG DD     G+ ++PD HPGSGSSVPGGPGVR   E          T ++ S     ++ +K K   +D     A  +E++A   +A + E+R  E   G+    R + L      D  + L+ K+ +A
Sbjct:    1 MRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSVPGGPGVRGRGE---------ATPARSSGNNNSRKHKKPKTGSDDRAELVADTKEVIALWRKAAEQEVRGDEPAFGEIEKDRAKDLAMEGSIDDIQRLQAKVDSA 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig692.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JDY9_9PHAE3.370e-1943.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXW8_9PHAE1.420e-1839.24Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU1_9PHAE9.630e-1839.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYJ0_9PHAE7.220e-1541.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPA4_9PHAE4.570e-1437.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig692contigP-littoralis_Contig692:90753..91415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size663
Hectar predicted targeting categoryother localisation
Exons1
Cds size663
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791436.4819682-CDS-P-littoralis_Contig692:90752..914151680791436.4819682-CDS-P-littoralis_Contig692:90752..91415Pylaiella littoralis U1_48CDSP-littoralis_Contig692 90753..91415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig692.15.1prot_P-littoralis_Contig692.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig692 90753..91415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig692.15.1

>prot_P-littoralis_Contig692.15.1 ID=prot_P-littoralis_Contig692.15.1|Name=mRNA_P-littoralis_Contig692.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=221bp
GDPENAIHPFEFMSGSIPTMLWEDGIALLGGDDSKSGAGEAIIPDSHPGS
GSSVPGGPGVRTAKERVRTGAQDPTTVSKESTVKVEKRARKAKKVPEDFG
VFRAGVEELVAKMSEAVDHEIRRGETDVGDGNLTRLEQLTDKTRSLKEKI
AAAEADGDDDSKTMYNAVLCSVEAEKKKLFAEITASAAAEETVEKAAAAA
LTRAANAEKSKVAKGKGRQEK
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mRNA from alignment at P-littoralis_Contig692:90753..91415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig692.15.1 ID=mRNA_P-littoralis_Contig692.15.1|Name=mRNA_P-littoralis_Contig692.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig692:90753..91415+ (Pylaiella littoralis U1_48)
GGAGACCCCGAAAACGCAATACACCCGTTCGAGTTCATGTCCGGCTCTAT
CCCTACTATGCTATGGGAGGATGGTATTGCGCTCCTTGGCGGTGACGACA
GCAAGAGCGGCGCCGGCGAGGCAATCATCCCAGATTCCCACCCAGGCTCT
GGCAGCAGCGTGCCTGGTGGCCCGGGTGTACGAACGGCGAAGGAAAGAGT
ACGCACTGGTGCCCAGGACCCTACAACGGTCAGCAAGGAGAGTACGGTCA
AGGTCGAGAAAAGAGCTAGAAAAGCAAAGAAAGTCCCGGAGGACTTCGGG
GTATTCCGGGCCGGAGTTGAGGAACTCGTGGCGAAGATGTCGGAGGCTGT
AGACCACGAGATCCGGCGCGGTGAAACCGACGTGGGGGATGGCAACCTCA
CACGTCTGGAACAGCTGACGGATAAAACGCGGTCTCTGAAAGAAAAGATC
GCGGCCGCTGAGGCGGACGGTGATGATGACTCTAAAACGATGTACAACGC
GGTGCTTTGCTCTGTGGAGGCCGAAAAAAAAAAACTTTTTGCGGAGATCA
CGGCGAGCGCGGCGGCTGAAGAGACGGTGGAGAAAGCGGCCGCGGCAGCG
CTTACCCGTGCAGCCAACGCGGAAAAGTCCAAAGTAGCAAAGGGAAAGGG
GCGTCAGGAGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig692:90753..91415+

>mRNA_P-littoralis_Contig692.15.1 ID=mRNA_P-littoralis_Contig692.15.1|Name=mRNA_P-littoralis_Contig692.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig692:90753..91415+ (Pylaiella littoralis U1_48)
GGAGACCCCGAAAACGCAATACACCCGTTCGAGTTCATGTCCGGCTCTAT
CCCTACTATGCTATGGGAGGATGGTATTGCGCTCCTTGGCGGTGACGACA
GCAAGAGCGGCGCCGGCGAGGCAATCATCCCAGATTCCCACCCAGGCTCT
GGCAGCAGCGTGCCTGGTGGCCCGGGTGTACGAACGGCGAAGGAAAGAGT
ACGCACTGGTGCCCAGGACCCTACAACGGTCAGCAAGGAGAGTACGGTCA
AGGTCGAGAAAAGAGCTAGAAAAGCAAAGAAAGTCCCGGAGGACTTCGGG
GTATTCCGGGCCGGAGTTGAGGAACTCGTGGCGAAGATGTCGGAGGCTGT
AGACCACGAGATCCGGCGCGGTGAAACCGACGTGGGGGATGGCAACCTCA
CACGTCTGGAACAGCTGACGGATAAAACGCGGTCTCTGAAAGAAAAGATC
GCGGCCGCTGAGGCGGACGGTGATGATGACTCTAAAACGATGTACAACGC
GGTGCTTTGCTCTGTGGAGGCCGAAAAAAAAAAACTTTTTGCGGAGATCA
CGGCGAGCGCGGCGGCTGAAGAGACGGTGGAGAAAGCGGCCGCGGCAGCG
CTTACCCGTGCAGCCAACGCGGAAAAGTCCAAAGTAGCAAAGGGAAAGGG
GCGTCAGGAGAAG
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