prot_P-littoralis_Contig692.3.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig692.3.1
Unique Nameprot_P-littoralis_Contig692.3.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length277
Homology
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BLAST of mRNA_P-littoralis_Contig692.3.1 vs. uniprot
Match: D7FPE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE1_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 2.160e-111
Identity = 185/265 (69.81%), Postives = 215/265 (81.13%), Query Frame = 0 
Query:   15 IVALYIAVAAAPCRTTAFCCVSMNTANERRSVNVCTNTSCRKADSRWTLDTFRAFAP-ASVEVVETGCQGRCGLGPNILTRPSEEVYNGVAQPATTAARMPSPPQIEFEFPVADALLGAYGHVTKGDVLYKRGLFADALACYTQCIETAGAFEGNANALSVAKVKQSSAMRMVAK--GRKQRASAASSRTTTAAPAMLEEAEASAREAVELYPAHTAAWLNLCDVLVDLGRVQEALETLATLKAEIPAAKLEASEKATRIRNTRR 276
            + AL++AV+ A     AFC  SM+T   + +V+VCTNTSCRKA SRWT+DTFRAFAP   ++V+ETGCQGRCGLGPNILTRPSEEVYNGVAQPAT AA +    +I+F  PVAD L+GA+GHV+KGDVL+KRGLFA+ALACY QCI+TAGAFEG+ NALSVAKVKQSSAMR++AK  GR    +A +  T  AA   LEEAEASAREAVEL+PAHTAAWLNL DVLVD GRVQEALETLA LKA+ P AK +ASEKA  IRNT+R
Sbjct:   17 VAALFMAVSPAAPAAVAFCSSSMST---KGTVHVCTNTSCRKAGSRWTVDTFRAFAPPGDIKVLETGCQGRCGLGPNILTRPSEEVYNGVAQPATVAAII----EIDFGVPVADTLVGAFGHVSKGDVLFKRGLFAEALACYNQCIDTAGAFEGSTNALSVAKVKQSSAMRLLAKEGGRGSSRAAGTGSTAAAASVTLEEAEASAREAVELWPAHTAAWLNLADVLVDTGRVQEALETLAELKAQFPDAKFDASEKAAIIRNTQR 274
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BLAST of mRNA_P-littoralis_Contig692.3.1 vs. uniprot
Match: A0A7S2V0W4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0W4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 6.680e-20
Identity = 73/243 (30.04%), Postives = 113/243 (46.50%), Query Frame = 0 
Query:   44 RSVNVCTNTSCRKADSRWTLDTFRAFAPASVEVVETGCQGRCGLGPNILTRPSEEVYNGVAQPATTAARMPSPPQIEFEFPVADALLGAYGHVTKGDVLYKRGLFADALACYTQCIETAGAFEGN----------ANALSVAKVKQSSAMRMVAKGRKQRAS-----AASSRTTTAAPAMLEEAEASAREAVELYPAHTAAWLNLCDVLVDLGRVQEALETLATLKAEIPAAKLEASEKATRI 271
            +S+++C N +CRK  +  T + F A  P  +++  TGCQG+CG GPN+   P  + Y GV QPAT AA +    +I     V D ++  Y    K D L K+     AL  Y+Q +  A A E            A    +  + ++ AM +V  GR Q  S         R+        + A++ A  A +L P +T  W+ L + L   GR+ EA + L      +P+AK   +E+  R+
Sbjct:   22 QSISICNNRNCRKDGASETYEVFEAMTPPEMQISFTGCQGKCGSGPNVRVEPGAKDYAGVHQPATVAAIL----EIALGVVVDDVVVERYTDKMKADKLLKQRQPKKALEMYSQALAGAEAAEATGQCQEEEENTATKKGLMSIPRAGAMALV--GRSQAYSDIMLAEKKQRSIDCGTDWAQLAQSDACRATQLDPKYTRGWIRLSEALEYQGRISEAKDALMQCINNVPSAKPTVTEEIERL 258
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BLAST of mRNA_P-littoralis_Contig692.3.1 vs. uniprot
Match: A0A061S794_9CHLO (Tetratricopeptide repeat-containing protein isoform 3 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S794_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 1.870e-6
Identity = 37/116 (31.90%), Postives = 57/116 (49.14%), Query Frame = 0 
Query:   45 SVNVCTNTSCRKADSRWTLDTFRAFAPASVEVVETGCQGRCGLGPNILTRPSEEVYNGVAQPATTAARMPSPPQIEFEFPVADALLGAYGHVTKGDVLYKRGLFADALACYTQCIE 160
            +V VCTN +CRK  ++  L   +     +V+V+E+GC G+CG GPN+   P   V   V+ P   A  +        +  V DA+L A     +G  L   G    A++C+ + IE
Sbjct:   43 TVRVCTNRTCRKQGAKQILRLTQDLCIENVKVIESGCMGKCGNGPNVGILPPGVVLGHVSTPRLLARILSE----LCDVAVDDAVLKATELRLRGTSLANAGDLQGAISCWNEAIE 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig692.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPE1_ECTSI2.160e-11169.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V0W4_9STRA6.680e-2030.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A061S794_9CHLO1.870e-631.90Tetratricopeptide repeat-containing protein isofor... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 243..263
NoneNo IPR availablePFAMPF14559TPR_19coord: 209..258
e-value: 5.3E-7
score: 30.0
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 41..110
e-value: 1.9E-8
score: 36.5
NoneNo IPR availablePANTHERPTHR47682TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEINcoord: 24..251
NoneNo IPR availableCDDcd02980TRX_Fd_familycoord: 46..100
e-value: 3.37327E-9
score: 50.7036
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 128..272
e-value: 3.4E-12
score: 48.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 133..252
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 43..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig692contigP-littoralis_Contig692:13903..21103 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig692.3.1mRNA_P-littoralis_Contig692.3.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig692 13806..21999 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig692.3.1 ID=prot_P-littoralis_Contig692.3.1|Name=mRNA_P-littoralis_Contig692.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=277bp
MTRPYRPASSRRRAIVALYIAVAAAPCRTTAFCCVSMNTANERRSVNVCT
NTSCRKADSRWTLDTFRAFAPASVEVVETGCQGRCGLGPNILTRPSEEVY
NGVAQPATTAARMPSPPQIEFEFPVADALLGAYGHVTKGDVLYKRGLFAD
ALACYTQCIETAGAFEGNANALSVAKVKQSSAMRMVAKGRKQRASAASSR
TTTAAPAMLEEAEASAREAVELYPAHTAAWLNLCDVLVDLGRVQEALETL
ATLKAEIPAAKLEASEKATRIRNTRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR036249Thioredoxin-like_sf