mRNA_P-littoralis_Contig692.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig692.1.1
Unique NamemRNA_P-littoralis_Contig692.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig692.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig692contigP-littoralis_Contig692:7084..10130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size995
Hectar predicted targeting categoryother localisation
Exons4
Cds size720
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig692.1.1prot_P-littoralis_Contig692.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig692 7114..9885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791435.7879508-UTR-P-littoralis_Contig692:7083..71131680791435.7879508-UTR-P-littoralis_Contig692:7083..7113Pylaiella littoralis U1_48UTRP-littoralis_Contig692 7084..7113 +
1680791435.855276-UTR-P-littoralis_Contig692:9885..101301680791435.855276-UTR-P-littoralis_Contig692:9885..10130Pylaiella littoralis U1_48UTRP-littoralis_Contig692 9886..10130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791435.7983944-CDS-P-littoralis_Contig692:7113..72661680791435.7983944-CDS-P-littoralis_Contig692:7113..7266Pylaiella littoralis U1_48CDSP-littoralis_Contig692 7114..7266 +
1680791435.8176136-CDS-P-littoralis_Contig692:7340..75211680791435.8176136-CDS-P-littoralis_Contig692:7340..7521Pylaiella littoralis U1_48CDSP-littoralis_Contig692 7341..7521 +
1680791435.8329313-CDS-P-littoralis_Contig692:8731..89191680791435.8329313-CDS-P-littoralis_Contig692:8731..8919Pylaiella littoralis U1_48CDSP-littoralis_Contig692 8732..8919 +
1680791435.844794-CDS-P-littoralis_Contig692:9687..98851680791435.844794-CDS-P-littoralis_Contig692:9687..9885Pylaiella littoralis U1_48CDSP-littoralis_Contig692 9688..9885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig692.1.1

>prot_P-littoralis_Contig692.1.1 ID=prot_P-littoralis_Contig692.1.1|Name=mRNA_P-littoralis_Contig692.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=240bp
MRDDSHKKSVGGQIMLLVIYSEYEVHQQSKGNKFTPMNRARYGGGEGRET
GAPAHHRQFFFPRHLLAKPGRDYCSSTLLSSVLYCCPGPPLVFLVVHMSR
PPTRIDVLKTTGLVIDEGYTLRQDIKSEGGIFRAEGVDDLINPKSWIGKT
PDDTQARALAKFLKRARAAGLIAKLELRSQGIFGTRTPSVRRGFHRHEET
SLLRRGPVLRRRFRVRRRRVRRRRRGAGGGGGGGTRRPR*
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mRNA from alignment at P-littoralis_Contig692:7084..10130+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig692.1.1 ID=mRNA_P-littoralis_Contig692.1.1|Name=mRNA_P-littoralis_Contig692.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3047bp|location=Sequence derived from alignment at P-littoralis_Contig692:7084..10130+ (Pylaiella littoralis U1_48)
AAAACGAGTCAGCAACAATCTCACAGTCCCATGAGAGATGACAGCCATAA
AAAAAGTGTTGGTGGGCAGATCATGCTGCTTGTAATATACTCGGAGTACG
AAGTACACCAGCAGTCAAAAGGTAACAAGTTCACCCCGATGAACCGAGCG
CGATACGGAGGGGGCGAGGGCAGGGAGACGGGAGCGGACAACGGGTGAAG
ATCTTCCTCAACCGACGAAGTACTGGAACCGTATCGGGCAGTCGCCCTCG
CGCGCACGCCCCCGCCCACCATCGTCAATTTTTTTTCCCTCGCCATCTCC
TTGCCAAGCCGGGCCGCGACTACTGCTCCTCGACACTTCTCTCTTCGGTC
CTGTACTGCTGTCCGGGCCCACCGCTAGTCTTCCTCGTCGTTCACATGTC
CCGCCCGCCAACGCGCATCGACGTCCTCAAAACTACCGGTGAGCGCGTCG
AATTCCATGGATGTGTAGCTGCTCAACTGATAGATACCGTAGATACAGAA
GTTACCATTGTCATATCTTTCAACACGTGAGGCACTTTTACGATCTGTGG
GCCCGGCAAGGCGGAGCACGGCGGTAGCTATGCGAACATTGCACGGCCGT
ACACATCCACCCCGCCTCCATATGGCAAGGCTTGTAGTAGGGCTCCTGAA
ACCGTGTTCATGACGAGAACAGCTGGGTTTGCGCAAGATGGTCTTGTTGC
ATGCGCGCACATCAATTTCGAACTATCCTACCAGCTCTTGTATGTGATTG
TGACGTGAAATCTTTTTTCATGCAAGCACATTTCAGGAACCGCCGCGTGT
GCCCGCGGCAAGCACAGGAGTAGCGATAGATATGCCTACATTGCACGAAA
CGCCATCGGTAGGTGTTCGATCCCGCCTCCTTGTGGCATGGCATGCTGTA
CGGCGACTGAAGCCGTTGTCATCGTGACAACAGCAGGATGACCGCAACGC
ATTGTTGCATGCGCGTATTATACCTCGAACAATGATGACGTAGACAAGCA
ATACAAGTATTTGTATCATATCTGAACACACACCTACATACTTCAAAGTT
CACTTTGTCATCTCGAATGCGCCATGCCTGCTCCCGTACAGCAGTCGTAG
TAGGTGCTCGCCCCCGCCTCGTTGTGGCTTGGCAAGGCGGAGAGCCACTG
AAACCGTAGTCATGATGACGGCATACATCAGGATTGCCCCGTTCTGTTGC
ATGCGCGGCGTCCCCGTATGTGACGTGATCATATAGCGGAACTGCAGTGT
CACCTACGTTGTATGTTTCCCTGTCGTCACGTTACCGAGAATCTCTTCGC
GTGGGTGTATCCTGCTCGATTTAGGGAGTAAAGACGTCCAGCAAAGCGGT
GCGAACGCCTTGCCGTTACGTTAAATGAAACACCAAAAAGTAAGAAGAAA
CACGGCAACCATGCGTAATACCACATATTTACACGATTATCATTGCACTT
CGTTCGGAATACAATCCCACAAGAAGAACAGCAGTAGCATTCTTCGTACT
TCGTACTCTATTCTGACTGCTGTCTACGAATGCTGCTGCTGGTCGTGAAA
TCCGCACACAATCACACACAACACGCTTTTAGTTTTTTTTTATTTGTTTT
CCGACCTACTGCGCGCGATTTGCCAATGATAATAATGCCGTTCGATAGGT
TTGGTCATCGACGAAGGTTACACTTTGCGCCAAGACATCAAGAGCGAGGG
AGGCATTTTTCGTGCGGAGGGCGTGGACGACCTCATCAACCCCAAGTCCT
GGATCGGGAAAACCCCTGACGACACCCAAGCGCGCGCACTTGCCAAGTTC
TTGAAACGTGCGCGGGCAGCGGGCTTGATTGCCAAGGTATTCGTCTCTGG
TGGTGTCATGACAATCAGTAGACCGTTTTTTTTACCTTCTGTTTTCGTTG
CAAAAAGTGTACTGGTATATTATTTGACATATATATTGATAATTATTTTG
ATATTGTTGCTGTTGTTGTTGCGATGGATAATTTCGACGCCATCACGGTC
GGTCGTTCTTCTTGTTGTTGCTGTTGTGTTTGAGGTATTCAGAACGTGAA
ACATGTTTTTGCTGTTGTCAAAATGATGTTGGTGTTGTTGTTCATGTCAT
GTTGCACGTTCTTTTTGTATTTTGTTTTCCTTGTATTTTTTTTTCCTTTT
ATTTATTTCAGTTTTTGTTATTTTTAGCAGTTTGTTGTTGTTGTTCTTTT
GGATTGTTGTTGATATTGTGGATGCTGTTGTCGAATGATTGTGTTGTTGT
TGTTGTTCATGTACTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTAAAGTATATGTACTTGGAATTACTTCGAAGTATAATTTTGGTTGTAG
TAGTTAGTTGTTGGTTGTCTTGTTTTGTTGTTGTTGGTGTTGTTCATGGT
GTTGTTGGTTTCACGGTAATACTTCCAATAGTATGCACACTCTCATGTGC
ATCCATCATACACACATGATGAATGCTTTTTTGCTCATTTTCTCTCCTCA
ACTTCGTACGTATCCGTTGCCCGCGTCGCTTGTCGTCGCCCCCCTATTCT
TAAGTTAGAGTTACGCTCTCAAGGTATCTTCGGAACACGTACGCCTTCTG
TCCGACGAGGGTTTCATAGGCACGAAGAGACCTCGTTACTGCGAAGAGGT
CCTGTCCTCAGACGAAGGTTCCGTGTTCGGCGACGACGTGTTCGGCGACG
ACGACGAGGAGCAGGAGGAGGAGGAGGAGGAGGAACACGACGTCCGCGGT
AGCTCCGTCATTAACCGGCCTTCTCGTAAACGCGTCAAGCGAGGCGAGAA
GGACCCATCCGCCACCTCGCTGTACAAATCTTTGAAAATCGCGGCTGGCG
CCCCCGTCAGCCCTGCAGCAAAAGACATCTTCCTCCTCAACCAATGCGGG
AGCCAGGACCACGTCGGCAACGACCCCGCCCCCGGATCCACCCCTGCCCT
CGCCGACACTACCTGGCCTCCCCACCACTATGCCTCCTCCAAGCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig692:7084..10130+

>mRNA_P-littoralis_Contig692.1.1 ID=mRNA_P-littoralis_Contig692.1.1|Name=mRNA_P-littoralis_Contig692.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=720bp|location=Sequence derived from alignment at P-littoralis_Contig692:7084..10130+ (Pylaiella littoralis U1_48)
ATGAGAGATGACAGCCATAAAAAAAGTGTTGGTGGGCAGATCATGCTGCT
TGTAATATACTCGGAGTACGAAGTACACCAGCAGTCAAAAGGTAACAAGT
TCACCCCGATGAACCGAGCGCGATACGGAGGGGGCGAGGGCAGGGAGACG
GGAGCCCCCGCCCACCATCGTCAATTTTTTTTCCCTCGCCATCTCCTTGC
CAAGCCGGGCCGCGACTACTGCTCCTCGACACTTCTCTCTTCGGTCCTGT
ACTGCTGTCCGGGCCCACCGCTAGTCTTCCTCGTCGTTCACATGTCCCGC
CCGCCAACGCGCATCGACGTCCTCAAAACTACCGGTTTGGTCATCGACGA
AGGTTACACTTTGCGCCAAGACATCAAGAGCGAGGGAGGCATTTTTCGTG
CGGAGGGCGTGGACGACCTCATCAACCCCAAGTCCTGGATCGGGAAAACC
CCTGACGACACCCAAGCGCGCGCACTTGCCAAGTTCTTGAAACGTGCGCG
GGCAGCGGGCTTGATTGCCAAGTTAGAGTTACGCTCTCAAGGTATCTTCG
GAACACGTACGCCTTCTGTCCGACGAGGGTTTCATAGGCACGAAGAGACC
TCGTTACTGCGAAGAGGTCCTGTCCTCAGACGAAGGTTCCGTGTTCGGCG
ACGACGTGTTCGGCGACGACGACGAGGAGCAGGAGGAGGAGGAGGAGGAG
GAACACGACGTCCGCGGTAG
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