mRNA_P-littoralis_Contig691.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig691.4.1
Unique Name	mRNA_P-littoralis_Contig691.4.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig691.4.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig691.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig691	contig	P-littoralis_Contig691:28319..35293 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Model size	202
Hectar predicted targeting category	other localisation
Exons	2
Cds size	201

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791435.3868723-CDS-P-littoralis_Contig691:28318..28396	1680791435.3868723-CDS-P-littoralis_Contig691:28318..28396	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig691 28319..28396 -
1680791435.3983185-CDS-P-littoralis_Contig691:35170..35293	1680791435.3983185-CDS-P-littoralis_Contig691:35170..35293	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig691 35171..35293 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig691.4.1	prot_P-littoralis_Contig691.4.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig691 28319..35293 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig691:28319..35293-
coding sequence from alignment at P-littoralis_Contig691:28319..35293-

protein sequence of mRNA_P-littoralis_Contig691.4.1

>prot_P-littoralis_Contig691.4.1 ID=prot_P-littoralis_Contig691.4.1|Name=mRNA_P-littoralis_Contig691.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
ELATAAGCPHGPELVTFSQNKRAARTCGQHQAHVLAALSMQDVLARQDKL
DGNIGYCKAKRVRNQL*

mRNA from alignment at P-littoralis_Contig691:28319..35293-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig691.4.1 ID=mRNA_P-littoralis_Contig691.4.1|Name=mRNA_P-littoralis_Contig691.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6975bp|location=Sequence derived from alignment at P-littoralis_Contig691:28319..35293- (Pylaiella littoralis U1_48)
GAGTTAGCCACCGCAGCAGGCTGCCCTCATGGACCGGAACTTGTGACCTT
CAGCCAGAACAAAAGAGCGGCGCGGACCTGCGGGCAGCACCAAGCTCATG
TTCTGGCGGCGCTGAGCATGCAGGCAAGGTATCATAGCTGGATCATAGCA
TAGGTAAAAACCAAAGTCGTAGCACCCCTGTACAGCAGCGGTGTCTTATC
TCTTTACGTAGTTGGCGAAGAGTAGGCAATCATAGCACCCAGCACAGACG
ATTAGGGGTGTTTTAATCAGCGGACATCCTTCGAAATATTTTCGAAATTT
CGAAATTTCGGAGCAGAATTGGTGGCCCGGTGGATGGGAACCATTTCGAA
AAGCCCCAGAATTTCGCATTTGAATTCTTCGAAATGATTTCGAAGGATTC
AAATGTGAAATTGCGAAATTGCGAAGTAGAGGGCGCACACGAAACAGCGC
ATCTGCCGCACAACCCCACAGAACTTCCAGCAGCTCGAGCGATTTCGCCC
GTGCCAGCGCTCAACTCAGCAACAGAAGTTTACGCAGGGGCATCGCTCGG
CTCCTGTGAATCATGGTCGAGACTAGGAAGCGCCGGCGCTCGCTGGGGCC
TCGCGAGGCGACGCAACAGCTTGATCATTTTCTGCTCTCACAGCTGTAGT
CGTTGCTGCTGTCGCTGTTGCAAGTGGAGTGGCATACACCGCCCATGCTC
CCAAGATCGGGCAATAGATCCACGAGCCCCGGCGTCTCTCATGCATGAGC
GGATCACTTGACCGACCTAGAGGAGCATAACTGCTTTTCGCGCTACAACA
GGATGCCGGTCGAGACTTTCGAGAAGCTTGTCGAGCTGCTTCGCCCATCC
TTGGAACGGAAGCGACGGTACAGGCGCCGCTGCCGCGCCTTAAATACTGC
AAACAATCTGAATTGAGCATGCACCGAATCCACTCGTGTAAGCGCACAGC
CGAAGTAGTGAGCTCTTGTGTCTGGCGAGGGAGATGTCCCTGATCTCGTC
TCGAGTTAACGATCGCAGGCGGTGCGATCGGGAAAGGAACGCACACATGG
CATGTGAGAGAGTCACTACTGCTGATTTTTTTGGTCGCACATTTAATTTT
CTCTCAGGGACAACAGCAGCAGTGCACACATACTTCGAACACGGTCATAC
TACTGCTGTACTGCAGCGCAGCCAAACTCCCGCACCAGTCGAACATCAAA
ACGCACGCGTACGCACATATTTAGCATCAGCTATATATACTTGAAAGCAC
AGCGCAACAGGACATACTTCACAAACTTTTCCTGCTTGTATACAGCAGTA
TATGATGCTGTACGAAGATTTTCGTTTTGTCACTGATGTATGCACACGCT
GTACACGGGCTGTCTCCTCCTGCATGTGATGCATACCGATACTTCGTGCG
TGAAAACCACCACCTCTGCAGTTGTTTATTGTGCGCGTGAGAATGACGAA
CACAGCAGTAGTAGCAGCAGCAGAAAGGCGTAACACATACTTCGAGAATA
TATCATATCAGCGGCAAAAATATAGAAACACACGTACATCAAATCTTGAC
GTACTCGCACACAAGCTTTTTTATTCATAGCAAGGTACAAGCCACACGGG
AGGAGGAGTTCCACGCAGCAGGCGTAGTGATACCATACCATGTACAGTTC
GCACAGACGTTCGAACTACTCCCGACTTTTGTTACGCGTACGCCCATATT
TAGCATTAGCCACACTTGGAAGCACAGCGCAACACAACAGGACGTAGTCT
ACTCCACAAACTTTTTCCCTGGTTGTAATGATAACGAAGATTTGCGTTTG
TTTGTGACTGCTGTACACGGTCTGCTCTTCCTGCAATATATGATACCGAT
ACTTCGTCTTGTTACATGATGAAAACCACCACCTCTGCAGTTTTTTTGTG
CCCGTGATAATGACGAACACAGCAGTAGCAGCAGCAGCAGAAAGGCGCAC
ACATATCAGCGGCAAAAATATCAGAAAAATATAGAAACACACGTATATCA
AATCTTGACGTACTCGCACACAAGAATGAGTTTTTTTTTCTAGCACCGCA
CCAACAGCAGTACAAGGTACAAGCCACCACAGGAGGATTTCCACTCAGGC
ATAGTGATACCATACCATGCACACTTCGTACAGACATGCGAACACCTCTC
AACTTTTGCTCCCTGCTGGTATGCGTTGTGTGTGTTTCTCTTGCTGTGTG
TGTCCACGTGTGATCTGCTGCTGTGGGGTCTAGAGGGTTCTTTATTTTCT
TGTGGGGGGCTCCCGAGGCGTTTCGTGACCTGCTCAAACACGCAAATGCG
TTGTGCGTATGGGGTTCCCCGACGTTCCACATGCTTCCCTTTCTATGAAT
TTACCATGTGCTTACCTCGGCACACTTTCTAGCGCCTACAATGCTCGTTG
CTTCGAATATCGCGTAAAGCTGCTTTGCTGACCTCGATTCCTTCCTCTTT
CTATTGCGATGATGTCCTTCAGGTGTGCGCACTAAGAGCGGCGTTATCAG
TGTTCATATACGTGTTGCTGTGGCTATCCGGATGCTTGCTGGCGGCTCCT
ACATCGACGTTGAGCTGCTCTTTGGCGTTGCAATCCCGATCGTGTTTTTG
ATCGTGTGGCAAGTGATCGATGCCACAAACAAGACGCCGGCAGTGGGTCC
CTTTTACTTCCAGCAAACGGAGGAGGAGTGCGCTCAGGCTGCAGGCAAAT
GGAAGGTGTGTCTGCAAATGAGGTGTTGTTGTTCCTTTATTGCGCGTGTC
AAATTGTCATGACATGGGTACGGGTGCCAACGATATTTCTTGGTCTTTGT
TCTCAGTATACCATAAAACCCTTTGGTTCCCCCCACCATTTATGATTCCC
CCCCATCTACTTTTCAGCCGAAAAGCATGGAAACTTTGATTTGCCCCCGG
GAAGACGCAGAAAATAAGAAAAAAAAAGCCCCCCCGGCATCCCGTGAATT
TTTACCTTTGGCAGTTGTTTTTCGAAGACTTCCACCCGGGGTTGCTTGAT
TTTTCAACACTTCGTTGTGCTTTCGGTATCGTTGCACATGGTTGAAGGGG
GTGACACGTCTTTGTGTTCGGCCCTTGCACGGCATCCCCACTTGCTGTCC
TCCTTCCTTTTCCTCTTGAATACTTGCTCGTATGTCTTGTCCATGGCGGG
TTCAGCAAACTCTAGAGAGAGAGAGAGGGCGCGCGTGTGTGTGTCCGTCT
GCTGTGTGCGTGCTTTATGTATCAATTTGTTTTTTGTGCCTTCCCCCCAG
GGAAGAGTATCCGCCGGGGAAGATTCGAAAAATAAATGTCCCCCCCTTCC
CCGTCAGTTTACCCCCGAGGGGTCGTATTTAAAAAAAAAAATGCCCACTC
CGGGAGTAAAAGAAATGTTTTTGCGGTACTCATTTTGCCGTACTCATCTT
ACATTGAGGTTCCCGAATTCAAACTAAACCGATCTTGCGATGCTAGTTTT
TGTTTTGTTACCGTTTGTTTCATATATTCAGTTATACGACTCCCCCCTGA
AAGTTGTAGACACACTTTCCTGACCCCGATCCCGACCCCTGATCCCCACC
CCGGCGCGCGCTCCCCATCACCCACTACCCGCCTTTCTTTTGCTTCGTAT
CCCACCACCCACCACGCAGGGACTGAGCACCAACGGCGTGTTCGATCATG
TGGTGGCCGCTGTGGATGGTTTGTTCTTCAGATGCAAGAAGGTCGATGGA
GTGGAGCCTTCTGAGGGGTCCGCGAAGACGGGCAAGGGGCGGCCGACCCT
CACCGCTGACGGCAGGCTAGGGGCGTCCTTCTAGAGCAGCGCGCCGGCAC
CGTCCAGAAGCGGGGAGTCGCCGGCGCGGGTTGCTCTGCGGATGATTTTG
GAGGACGGCAAGCAATGGCGCCCGGAGTACAACAGGCTGCGCAACTCGTA
AATACTGCACGGGTCGTATGTTGGCTGGCGTTTGCGATGTTTGGTTTTGG
TAGCGGGTAGAGGGCAGCGGAGCTGGCAGCAGATAGAGGGCGCGGAGCTT
GGTTCTGCATGCACGGGGGGGTAAGGGCATCGTCTCGTGTGTTGTTGTGA
ATGCTTGGTTGAGCGGATTTGCCCCCCGCTTTAGTTTTCCTTCGGGATAT
AGGACAGATTCATTTGGTACTAAACCTTGCATGGGTGTTGATTGGATGTC
TTTACGCTGAGTTGATTTGTGCGATTGCCTTTACCTCCGTGAGGGGTGAG
CTGTGGTCTCTACCTTTTTTTCGATAGCCTGATATCTGTCCGAGCGCATG
CTTTTTTTGTATTTTGTCTGGTACGATGTATATAGCTGTTCGCGTTTGTG
TGACCCCCTCTCGAGATCTGTCTTATTTTGATCGGATCAATGTTATCTTC
CGTGCTCAGTCAAGTGTAGTTAGGACTGTCGTCCTTGATACTACTCTGAA
ATGTGATGTGACGATCACACAAGGCGCATGTGCTGTTCATGTGTTTTTTT
TTTCATGTGGATATCACTCATGCAGCCACCTCGGCGGTGGTTGAGTAGAT
TTTTTTTAAATACACGGACGAGTCGTCCCATTCCGAAAATTACAGGTGAT
TTTCTCTTTTGTGTATGTAGCATTCACCTGGAGGGGTCAGGGCGAGTTCG
CAATCAAAACAAAGGATCAGCTAGAAACGTGGGCCCCTGGATACACGTAG
AACTTGAAATGCGATTGGTTTCATGTTCAGGAGGACAGGTTGACTGCTGC
TGTCCATCAGGCATAAATAAAAAGAAAAACTAAAACACTGCAGTAGAAAC
CAAAGAAAGGTAATATCACAGAAGGAAAGGTGTGTGCAATAAAAATAATG
GAGAAGCAGTGTGCGTTGGAGCGCCGCTTCTCAAATAACTGCGTTAAGCC
GCGTGCGTTGCTGTTTGGTGGCGTATGATATGCCCGCTGCTTCACGGCAG
TGCTGCTGCTGCTGTTGCTGCAAAAACACAGCTGGTGGTGGTGCTTGTGT
GTGCCTCTCATCATTTTTCACAAGAAAGGGACCCCAATAATAACGCGCCC
TTCCGACAAGATAGCTGTGCGCACAGGACACGGTCTGCGGTGAACCTAGC
AGCAGTGGGTAGATGCTATTTACCCAAAGGGCTTGAACTGATGGTCGTAA
CGATCTGTGCTGAACTGGTGTCAAAAAGTGTTGCAAATTGTGGCCATTAT
CTCGGACACAGACACACAGACACATACACAGAGACACCATAATAAAAAAA
GGTCGGTTCACAGTTATTTTTTTTTCCTCGAAACCCCTTTTTCCCTTTTT
TTTTCCCCCAAAACCCCTTTTTCTCACCCTACGAGAAAAAGGGGTTTAAC
AAAAAGGGAAAATGGGGTTTCGGGGAAAAAAAAAAGGGGAAAAAAACTAT
GAACCGGGCTTAAACCGTCGCAAGGTGCTGGTGCTGTACAAATTTGACGA
AAAAACTGTATTAGTATGTTGAGTGAAACCGGAAGTGTATGTGCTGCTAT
AGCACAGTATCACACACACACGCGCCCGCTTTCCTATACCACACAGCACG
GTATCACAGGCCAAACACAAGGCACAGCATCGCTGATGTACGGTTTCATT
TCATTCGTAAATAATAGACTTGTGCTGCACAGTAACCGCAAGACATATTA
TGTTACTGCTGGTGGTAGCGCAGACTACACATATCACAACAGTTTTTTTT
TTGTCCACAAGGTATCCATGTTCCATGCTTCCCTCTCGATTGTCGCCCAT
GCTGCTGCTGGTTGTGTGGAGTGCGCGAGGCGGGCGATGGATGAGACGGC
TTGCTTGTGGGCAGCCCATCTCATTTCGAAAATTTCGAAACTTCGAAGAA
GATTCGCATCTGTGATTATATCACCCGGGATTTGGCGGTTTCAAACTTGA
CCCATTTCGACGTTTCGAAGCTCCGAAATTTCGATATCGAGCGGCCTGAT
TAAAACACCCCTTTTACTTGCGATTCCTCGGGAAGAACCCAGTACGTACA
GCAGTGGCGGAGTGCTGTGTGGTGGATTTCTATACTGAATACAATATAGA
TTATGCAAGAGTACTGAAACGCATGTACGTGACTCGTTCTGCCGTACAAA
CAGAGACAACACAAACAAGTACGGCAGGCACGCATAGCACCCATCACAAA
CGATCACTTGCGAAAAAAAAACTTGGGAAGAACCCAGTGTTGGTTGTCTA
GTCTGTACTGAATACATCACATTCAGTATACTGAATACATTACATTTTCA
TGAAAGAGTACTGACATGCCTTATCGGTACTCGTACTGCTGTACACGCAG
TCAACCCCACACACAAGTACGGCAAAAACCACACTCTCGTGCCTTACGCT
GCCCCCCTTCTGTCACTTGATTTGTTTTGGAGTCGATTGCTGCGCTCGTC
GTACAGATAAATTGATACAGCACATCGGATGTCAAACTGTTGCGTACCCG
GAAGTAGGGTGTGAGGATACGTTGCTGGCTGGAGACGTTGACTCGTGTGG
TACAGTGAGTATTGAATCGCAGTTTTTTTCCCACCGCAGTACTTCTGATA
CTCTGGGTAATCCTGGTGGTGTGATACGTATGTTATGCAGCGGCTGCGGT
GGAAAAACCTTGACTAAAAATAATAAAGGGAAACGCTGCAAATTTAATCT
ACAACATATATGGAGCTCCATCCATCTGTACCGGGCGTGGCGGCGAACAC
AAAGACCGTCAAACCACACGTCTTGTGTGCAAGTGCATACCTAAGAGTAA
CAAAGGAATTCTTATTAGCATCGTCCTAAGCACTGCCGGCAAGCCGACGA
GATCGTTATAGTCGCAAAAGCGCTGGAGTCTGACCCTTTGTTCTTCATGA
CCTCATGACACACACTGAAGTTGGGATTTTGAGTCAGTGACACCCGGGGA
AACTGCTGAAACGACAAATTGTTATTATCCTTTCCTCGACTCCGCAGGAC
GTTCTGGCGAGGCAGGACAAGCTTGACGGGAACATCGGGTACTGCAAGGC
GAAGAGGGTCCGAAACCAGCTCTAG

Coding sequence (CDS) from alignment at P-littoralis_Contig691:28319..35293-

>mRNA_P-littoralis_Contig691.4.1 ID=mRNA_P-littoralis_Contig691.4.1|Name=mRNA_P-littoralis_Contig691.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig691:28319..35293- (Pylaiella littoralis U1_48)
GAGTTAGCCACCGCAGCAGGCTGCCCTCATGGACCGGAACTTGTGACCTT
CAGCCAGAACAAAAGAGCGGCGCGGACCTGCGGGCAGCACCAAGCTCATG
TTCTGGCGGCGCTGAGCATGCAGGACGTTCTGGCGAGGCAGGACAAGCTT
GACGGGAACATCGGGTACTGCAAGGCGAAGAGGGTCCGAAACCAGCTCTA
G