mRNA_P-littoralis_Contig690.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig690.41.1
Unique NamemRNA_P-littoralis_Contig690.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig690.41.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 1.300e-77
Identity = 130/240 (54.17%), Postives = 158/240 (65.83%), Query Frame = 1
Query:    7 SAWWTQLQEEELAVPTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGAGAAGREGIPVDLKVRLKMTLRTKHNILENNIDGMCTSTKYSSFPLLYVTQLLSTHRHVRGAYLPSNRNVPRRSDGLLPQTGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKV*KDREYKLRKADGTEFTRKGCYLIVDNGY 726
            SAWW +LQ+ +LA  T+ AAKVFRERFRVP+ FF  LV+LSR K+WFS G   AA REGIP++LKV  K         L    + +  +  +  F      ++   H      YLP+   +     G+  Q G TGA GSTDVTH+G  MCPFTLGRSFTGKEGFPT+A+EVTVDHAGRA+ VT GF G TNDKT +RYD+ V  IR      +REYKLRK +GTE TR+GC+LIVDNGY
Sbjct:   74 SAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKVLGKGNCFDDVEQLSKMSESIAQAL-FHKFCRHSAAEMFDEH-----IYLPTGTYLDEVM-GIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGY 306          
BLAST of mRNA_P-littoralis_Contig690.41.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 3.880e-66
Identity = 137/350 (39.14%), Postives = 169/350 (48.29%), Query Frame = 1
Query:    7 SAWWTQLQEEELAVPTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGAGAAGREGIPVDLKVRL----------------------------------------------------------------------KMTLRTKHNIL---------ENNIDGMCTSTKYSSFPLLYVTQLLST----------------------HRHVRG---------AYLPSNRNVPRRSDGLLPQTGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKV*KDREYKLRKADGTEFTRKGCYLIVDNGY 726
            SAWW QLQ  +L   T++AAKVFR RFRVPHAFFL LV+++R KKWFS     A GR GIP++LK+                                                                        + T R K   L           ++ G  T+   +S  +L   Q+L                        H+  +           YLP+  +       +  + G TGAIGSTDVTH+GWGMCPFTLGRS+TGKEGFPT+A++VTVDHAGRAI +T GFTGATNDKTI+RYDA V TI+ +     R YKLR+ADGT   RKGCY IVDNGY
Sbjct:   76 SAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSYRSGLLLLVVNCSDVPSIEPMRWIVVHNFTRWYRRVHSSTAVVAEHGSMGNVPCTVTRTSHRWHRKYCCRRPTAREKRRTLWFRLHTFQTRGHLRGHATTFDAASTKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTG-SYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGY 424          
BLAST of mRNA_P-littoralis_Contig690.41.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 2.640e-64
Identity = 117/245 (47.76%), Postives = 153/245 (62.45%), Query Frame = 1
Query:   10 AWWTQLQEEELAVPTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGAGAAGREGIPVDLKVRLKMTLRTKHNILEN--NIDGMCTSTKYSSFPLL---YVTQLLSTHRHVRGAYLPSNRNVPR-RSDGLLPQTGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKV*KDREYKLRKADGTEFTRKGCYLIVDNGY 726
            AW   L++E+L  PTS AAK FRE FRVP+ FFLRLVEL ++K WF+     A GR   PV+ KV   +T+  + N+  +  N+  M T T    F      + T++   H      +LPS  N    R  G   + GF GA+GSTDVTH+GW  CP+  GRS+TGKEG PT+ ++VTV+HAGR + VT+GFTG+TNDKTI+  D AV  IR +K   ++ + + K DGT  T KGCYLIVDNGY
Sbjct:   64 AWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEH-----IFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGY 303          
BLAST of mRNA_P-littoralis_Contig690.41.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 1.090e-62
Identity = 108/248 (43.55%), Postives = 151/248 (60.89%), Query Frame = 1
Query:    7 SAWWTQLQEEELAVPTSDA---AKVFRERFRVPHAFFLRLVELSREKKWFSDGGAGAAGREGIPVDLKVRLKMTLRTKHNILENN-----IDGMCTSTKYSSFPLLYVTQLLSTHRHVRGAYLPSNRNVPRRSDGLLPQTGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKV*KDREYKLRKADGTEFTRKGCYLIVDNGY 726
            S WW +L E      T      A+ FR  FRVP+ FF+ LVEL R++ WF  G +   GR+ +PV+LKV   + + ++ N+  +      I     ++ +  F   +  +L   +      YLP+  ++ R+      + GF GA+GSTDVTH+ WGMCP+   R +TGKEG PT+AF+VTVDH+GR + VT+GFTGATNDKTI+RYD AV  IR + V  +++YKL   DG +F  KGCYL+VDNGY
Sbjct:  107 SGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEY-----VYLPTGEDL-RKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGY 348          
BLAST of mRNA_P-littoralis_Contig690.41.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 2.370e-61
Identity = 109/249 (43.78%), Postives = 154/249 (61.85%), Query Frame = 1
Query:    7 SAWWTQLQE-EELAV-----PTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGAGAAGREGIPVDLKVRLKMTLRTKHNILENNIDGMCTSTKYSSFPLLYVTQLLSTHRHVRGAYLPSN---RNVPRRSDGLLPQTGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKV*KDREYKLRKADGTEFTRKGCYLIVDNGY 726
            S W  QLQE ++L V     PTS  A+ FRE FR+P+ FF+ LV L +++ WF  G   A+GR GIPV LKV   + +  + N   +       S + ++      T+  +   +    +LP+    + V  + D L    GF+GA GSTDVTH+ WGMCP+   RS+TGKEG+PT+A++VTVDH  R + VT GFTG+TNDK+I+RYD AV  IR + +  ++E+ + +ADGT +  KGCYL+VDNGY
Sbjct:   88 SGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRL----GFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGY 332          
BLAST of mRNA_P-littoralis_Contig690.41.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 6.530e-60
Identity = 111/249 (44.58%), Postives = 153/249 (61.45%), Query Frame = 1
Query:   10 AWWTQLQEEELAVPTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGAGAAGREGIPVDLKVRLKMTLRTKHNILEN--NIDGMCTSTKYSSFPLL---YVTQLLSTHRHVRGAYLPSNRN-----VPRRSDGLLPQTGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKV*KDREYKLRKADGTEFTRKGCYLIVDNGY 726
            AW   L++++L    S  +K FR  FRVP AFFLRLV L + K WF+  G  AAGR+  PV+ KV   +T+  + N   +   +  M  +T  + F +    +  ++   H      YLPS +N     V ++ D L    GF+GA+GS DVTH+ W  CP+ L RS+TGKEG PT+ ++VTV+HAGRA  VT+GFTG+TNDKTIV +DAAV+ IR +K   ++ + +   DGT  T KGCYL+VDNGY
Sbjct:   62 AWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEH-----IYLPSEQNGELDHVMKQYDRL----GFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGY 301          
BLAST of mRNA_P-littoralis_Contig690.41.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.500e-57
Identity = 106/249 (42.57%), Postives = 148/249 (59.44%), Query Frame = 1
Query:   10 AWWTQLQEEELAVPTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGAGAAGREGIPVDLKVRLKMTLRTKHNILENN-----IDGMCTSTKYSSFPLLYVTQLLSTHRHVRGAYLPSNRN-----VPRRSDGLLPQTGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKV*KDREYKLRKADGTEFTRKGCYLIVDNGY 726
            AW   L++++L    S ++K FR  FRVP +FFLRLV L + K WF+  G  AA R+  PV+ KV   +T+  + N   +      +      T +  F   +  ++   H      YLPS +N     V ++ D L    GF+GA+GS DVTH+GW  CP+ L RS+TGKEG PT+ ++VTV+HAGRAI VT+GFT +TNDKT V +DA V+ IR +    ++ + +   DGT  T KGCYL+VDNGY
Sbjct:   35 AWAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEH-----IYLPSEQNGELDHVMKQYDRL----GFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGY 274          
BLAST of mRNA_P-littoralis_Contig690.41.1 vs. uniprot
Match: A0A6H5KEF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF0_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 7.710e-56
Identity = 100/197 (50.76%), Postives = 121/197 (61.42%), Query Frame = 1
Query:  136 KKWFSDGGAGAAGREGIPVDLKVRLKMTLRTKHNILENNIDGMCTSTKYSSFPLLYVTQLLSTHRHVRGAYLPSNRNVPRRSDGLLPQTGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKV*KDREYKLRKADGTEFTRKGCYLIVDNGY 726
            +KW   G    A REG P++LKV  K         L      M  +T +  F   +  +++                      G+  Q G+TGA GSTDVTH+ W MCPFTLGRSFTGKEGFPT+A+EVTVDHAGRA+ VT GFTGATNDKTI+RYD+ V  IR      +REYKLRKA+GTE TR+GC+LIVDNGY
Sbjct:   67 QKWI--GVPLPANREGTPLELKVLGKGNCFDDVEQLSKMSKSMAQAT-FHKFCRHFAAEIM----------------------GIFHQLGYTGACGSTDVTHIDWNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGY 238          
BLAST of mRNA_P-littoralis_Contig690.41.1 vs. uniprot
Match: A0A6H5JG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG32_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.750e-54
Identity = 82/113 (72.57%), Postives = 94/113 (83.19%), Query Frame = 1
Query:  388 LLPQTGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKV*KDREYKLRKADGTEFTRKGCYLIVDNGY 726
            +  + G TGAIGSTDVTH+GWGMCPFTLGRS+TGKEGFPT+A++VTVDHAGRAI +T GFTGATNDKTI+RYDA V  I+ +     R YKLR+ADGT   RKGCYLIVDNGY
Sbjct:    3 MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHVIKADFQYTKRTYKLRRADGTFRERKGCYLIVDNGY 115          
BLAST of mRNA_P-littoralis_Contig690.41.1 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 4.050e-52
Identity = 100/239 (41.84%), Postives = 136/239 (56.90%), Query Frame = 1
Query:   10 AWWTQLQEEELAVPTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGAGAAGREGIPVDLKVRLKMTLRTKHNILENNIDGMCTSTKYSSFPLLYVTQLLSTHRHVRGAYLPSNRNVPRRSDGLLPQTGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKV*KDREYKLRKADGTEFTRKGCYLIVDNGY 726
            AW   L++++L    S  +K FR  FRVP++FFLRL  L + K WF+  G  AAGR+  PV+ KV   +T+  + N   +       S K +               HV   Y                + GF+G++GS DVTH+GW  CP+ L RS+TGKEG P + ++V V HAGRAI VT+GFT +TNDKTIV +DAAV+ IR +K   ++ + +   DGT  T KGCYL+VDNGY
Sbjct:   98 AWAQMLEDKDLDDSNSITSKQFRLDFRVPYSFFLRLGALVKSKDWFTTSGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTND-----------ELDHVMEQY---------------DRLGFSGSMGSMDVTHIGWSKCPYNLARSYTGKEGVPAIGYQVMVSHAGRAIAVTEGFTCSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGY 310          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig690.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSI7_9PHAE1.300e-7754.17DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JCU6_9PHAE3.880e-6639.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE2.640e-6447.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.090e-6243.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE2.370e-6143.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI6.530e-6044.58Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JHI0_9PHAE1.500e-5742.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEF0_9PHAE7.710e-5650.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG32_9PHAE1.750e-5472.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFR8_9PHAE4.050e-5241.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig690contigP-littoralis_Contig690:152963..154148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size726
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.12e-31
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size429
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791435.181698-UTR-P-littoralis_Contig690:152962..1531751680791435.181698-UTR-P-littoralis_Contig690:152962..153175Pylaiella littoralis U1_48UTRP-littoralis_Contig690 152963..153175 +
1680791435.221904-UTR-P-littoralis_Contig690:154064..1541481680791435.221904-UTR-P-littoralis_Contig690:154064..154148Pylaiella littoralis U1_48UTRP-littoralis_Contig690 154065..154148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791435.1966312-CDS-P-littoralis_Contig690:153175..1532931680791435.1966312-CDS-P-littoralis_Contig690:153175..153293Pylaiella littoralis U1_48CDSP-littoralis_Contig690 153176..153293 +
1680791435.2116733-CDS-P-littoralis_Contig690:153753..1540641680791435.2116733-CDS-P-littoralis_Contig690:153753..154064Pylaiella littoralis U1_48CDSP-littoralis_Contig690 153754..154064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig690.41.1prot_P-littoralis_Contig690.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig690 153176..154064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig690.41.1

>prot_P-littoralis_Contig690.41.1 ID=prot_P-littoralis_Contig690.41.1|Name=mRNA_P-littoralis_Contig690.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MTLRTKHNILENNIDGMCTSTKYSSFPLLYVTQLLSTHRHVRGAYLPSNR
NVPRRSDGLLPQTGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLA
FEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKV*
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mRNA from alignment at P-littoralis_Contig690:152963..154148+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig690.41.1 ID=mRNA_P-littoralis_Contig690.41.1|Name=mRNA_P-littoralis_Contig690.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1186bp|location=Sequence derived from alignment at P-littoralis_Contig690:152963..154148+ (Pylaiella littoralis U1_48)
AAGCAGTCTGCCTGGTGGACGCAACTTCAGGAGGAAGAACTTGCCGTGCC CACGTCCGATGCGGCGAAGGTATTCCGAGAGCGCTTTCGCGTGCCTCACG CCTTCTTCCTGAGGTTGGTGGAGCTGTCGAGGGAGAAGAAGTGGTTCTCA GACGGAGGAGCGGGTGCAGCAGGCCGTGAGGGTATCCCAGTAGACCTCAA GGTGCGCTTGAAAATGACACTTCGTACGAAGCATAACATACTGGAAAATA ATATAGATGGTATGTGTACAAGTACAAAATACAGCAGCTTTCCACTGCTG TACGTCACACAACTGCTGTCCACACACCGCCGTCCACCTCATGACTGCAG CACAACTGCTGCACCTGATGAAAGTCTGCATGCCTTTCGGGGCCGGTATA TTTGTGAAGCACTTGCAGCTGTAGGGTATGCGAGACCAATCAAGTGCGCA ACGATTTTTGTGGGTCGGCACGACGAGGACTAGCGAATGAACTTATTCTG GATAACAAAGTGCCGCAGACGGATATCACCACAGCAGTGTGTGTTGCTGA TGCTGCCGAAGATACCGCTGCAGGTTTTTGGGTACTCTTCTGTGCCCCAC TCCTGGGTCGGTGGTTATTACGAGGTACTTATATTCCGAACCTTTCTTGA TTGGTCGTTTCGGGTCGAGTGGGTGCGGAAACACGGGAATGCAACCATAC ATGACTGCTGTACTGCAACCAGCTGTCGTTAATGAGCAAATCGATGGCGG CAGCAACGTTCCACAAGTTCTGCAAGAACTTCGCGAAGGAGATGTTCGAG GAGCATATCTACCTTCCAACAGGAACGTACCAAGACGAAGTGATGGACTG CTACCGCAAACTGGGTTTACTGGAGCAATCGGTTCTACCGATGTCACTCA CGTCGGTTGGGGCATGTGTCCGTTCAcCCTTGGCCGTTCTTTCACGGGCA AGGAGGGGTTTCCAACCCTGGCGTTCGAGGTTACCGTCGACCACGCGGGC CGCGCCATTGGCGTCACCCAAGGGTTCACCGGTGCGACCAATGACAAGAC GATCGTCCGCTACGACGCAGCCGTACAGACCATCAGGAACAACAAAGTGT AAAAGGATCGAGAGTACAAGCTTAGGAAGGCGGATGGCACGGAGTTCACC CGGAAAGGATGCTATTTGATCGTCGACAACGGCTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig690:152963..154148+

>mRNA_P-littoralis_Contig690.41.1 ID=mRNA_P-littoralis_Contig690.41.1|Name=mRNA_P-littoralis_Contig690.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig690:152963..154148+ (Pylaiella littoralis U1_48)
ATGACACTTCGTACGAAGCATAACATACTGGAAAATAATATAGATGGTAT
GTGTACAAGTACAAAATACAGCAGCTTTCCACTGCTGTACGTCACACAAC
TGCTGTCCACACACCGCCATGTTCGAGGAGCATATCTACCTTCCAACAGG
AACGTACCAAGACGAAGTGATGGACTGCTACCGCAAACTGGGTTTACTGG
AGCAATCGGTTCTACCGATGTCACTCACGTCGGTTGGGGCATGTGTCCGT
TCAcCCTTGGCCGTTCTTTCACGGGCAAGGAGGGGTTTCCAACCCTGGCG
TTCGAGGTTACCGTCGACCACGCGGGCCGCGCCATTGGCGTCACCCAAGG
GTTCACCGGTGCGACCAATGACAAGACGATCGTCCGCTACGACGCAGCCG
TACAGACCATCAGGAACAACAAAGTGTAA
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