mRNA_P-littoralis_Contig1172.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1172.3.1
Unique NamemRNA_P-littoralis_Contig1172.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1172.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1172contigP-littoralis_Contig1172:43623..46191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size487
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789491.3037934-UTR-P-littoralis_Contig1172:43622..437541680789491.3037934-UTR-P-littoralis_Contig1172:43622..43754Pylaiella littoralis U1_48UTRP-littoralis_Contig1172 43623..43754 -
1680789491.352275-UTR-P-littoralis_Contig1172:46133..461911680789491.352275-UTR-P-littoralis_Contig1172:46133..46191Pylaiella littoralis U1_48UTRP-littoralis_Contig1172 46134..46191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789491.3125694-CDS-P-littoralis_Contig1172:43754..439481680789491.3125694-CDS-P-littoralis_Contig1172:43754..43948Pylaiella littoralis U1_48CDSP-littoralis_Contig1172 43755..43948 -
1680789491.3269506-CDS-P-littoralis_Contig1172:45198..452751680789491.3269506-CDS-P-littoralis_Contig1172:45198..45275Pylaiella littoralis U1_48CDSP-littoralis_Contig1172 45199..45275 -
1680789491.3381643-CDS-P-littoralis_Contig1172:46107..461331680789491.3381643-CDS-P-littoralis_Contig1172:46107..46133Pylaiella littoralis U1_48CDSP-littoralis_Contig1172 46108..46133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1172.3.1prot_P-littoralis_Contig1172.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1172 43755..46133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1172.3.1

>prot_P-littoralis_Contig1172.3.1 ID=prot_P-littoralis_Contig1172.3.1|Name=mRNA_P-littoralis_Contig1172.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MLDHVKLVSCAGNWARSLRARRPTSSPLKHHKWQGARVAAPVPLNQVGLA
GVHRPREYSSAGQVPLHILLQDGAENPAGAHDDETSPNVGRGKISMHK*
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mRNA from alignment at P-littoralis_Contig1172:43623..46191-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1172.3.1 ID=mRNA_P-littoralis_Contig1172.3.1|Name=mRNA_P-littoralis_Contig1172.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2569bp|location=Sequence derived from alignment at P-littoralis_Contig1172:43623..46191- (Pylaiella littoralis U1_48)
CCACACTCAGCCAGTCGCCTGCTACGTCAGCCAGCTTAGGGAAGCCTTGG
TGTTCGGCATGTTAGACCATGTCAAGTTGGTCAGGTGAACTTGCACGTCG
CCGCTGCCCCAGTCGACAGAGCTGTGCGGGCAGTCGAACGGAGGGATGTT
TAGCCGCCTGTGATGCCGCTGTAGCTCTACTGGACCGGTCGCCCCGGTGG
ACTAGTGGTCCCCTCGTTAACCACTAGATGCAGAGGAACGGGGGTTCCAT
TCCCGGTGAATGTGTTCCTATGCTACTTTGAAAGCAGCTATGCTGTTAGT
AAAAGCAGATTCGGCTTCGCCGACGAGGGTAGGGACCGCGGATCCCTGCT
CGCGAGAAAAAATCTCACGCATGTACCGCAGAAGGAAGGTGGGGGTAACT
CCTCCTGTGTTGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCTAGCCT
GTAGTTTGAACCGCAGGGTGCAGACTAGTGTGCCAGAGAAAATGGGATGA
CAACACACTTGAGCATGGTGGTGTGGGATACGCGCCGCGTAGCTTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCCCTCTCTCTCTCTCTCTCCTCTCTCTCTCGAAGACTGG
AGACGGACAGAGGAGGGGGTAGGTGAAGGCTTGTCGGAGACTCTGTTGTG
CAGCATCATGACATGTTGTGTGTAAATACCGCTCTCTCGTCCATTTCTTC
CTCCCCGCTGACCCACCCCTCTTTCTTGCCTACTGTTCGGACTGACTGCT
GTGCTGTCCTCACTGGATTGCTCTGGCATCTGTACGATGCCCTCTACCCC
GACGGGTCTTGGCGGGTACTCTGCGAATAACTCCCGCCGGGAAACCACGC
ACATTGGTCTATGTAGTTGCGCCGGCAACTGGGCCCGCTCTCTACGCGCG
AGGCGTCCCACTTCGTCACCGCTGAAGCACCACAAGTGGCAAGGTGCGGT
TGGTGTTTTGTGCGTTGTCTCTCTTCCCCTGGGTCGAAAGTGCAGGTTTC
CCTAAGGGGGTGCTATTTTGGACATCCGTGTCGGCTAGTCTACGTGTACG
CATGGCTCGACAGACAAGGTGGACTTGGTGCTTGTGCGTTTTTCCCTGTG
GCATCCGAGTTTTCCAGTTAATGGGTGGCCTGACAAGGGCGGTAAAAAAT
TCCTTACTGAAAAACCAAATTTTTGATCTGAAAGAACATTCCCAGTCTTT
AATCAAGTCAAAAGAGCTTATTCTGATAAGGCTTCAACATGGGCTGTCGT
CTGTTCGTACCCGATAACAAGGATTAAATCAGGAGAAGACGTCATGCAGT
AGCTTCGTCTGCGTCGGCGCATTCAGATCTCCTACTGGGGCTTAGTTATC
GAAGTTCGCAGCACTGGCACAAGAACTCCGCAAGATCCCTAAAAAACTGC
GCAATCCGGACTGACGCTAAACGTTTGACGCAGCTGTACTCGCCGCCATG
GGCATCAATCTTCTGAACTGCGGTTCGTCCGAGGTAGCTATTGGCATGAG
CTACTGCTGTTGACCCGTAGTTTTGGAGGTTAGGGTATGTGGCGTCGAGT
ACAGCAGTGGGAGATAGCACAGCAGTGGAAGACGATTTTTGGAATCTGTC
CATTTTGCGGAGTCTTTTATCCTCTTCTGCGGCCATCGATATCTAAGCGC
CAGCAGTAGCTCGGAATGCGCCGACGCAGATGTAGCTACTACATGACGTC
TTCTCCTGATTTAATCCTTGCTATCGGGTACGCACAGACGACAGCCCATG
TGTAAGCCTTATCAAAATAAGCTCTTTTGACTTGATTCTAGAGTCATTTA
AAAGTTTTATCTTGATGTTTATGGAAGAGATTGGAGGTAGACATGTGATA
TGCATGTAAAGAGGAGCCCCCGCCGCCGCTGTGTGCGATAACCAACCGTT
TTCCTCCTTCCCGACACCTTCCTACTGGTGTGAGGTACCCAGTGTGTGAG
TGTCAGGGCCCGTTCACTGTTTTTAAAAATCCGTGCCTCTCGTCGATCGG
TTGTCAGGGGACCCTTAAGTTGTTGCAATACAGCGAGCTCTGTTTACTTA
CCTACTCTGTCGTTTGTCGTCTGGTGCTCGCTTCGGGAGTTCCACGTGTT
TTCAGTCGTAGTAGTGGGTGCCTTCTTCGATACTTGTACCCCACATTTTC
AGCCCTTCTCCTCTCCCCAACCTCCTATTGTTTCCTTTTTCAGGCGCTCG
TGTCGCTGCGCCCGTTCCCCTCAACCAGGTGGGGCTGGCGGGGGTGCATA
GACCGCGAGAATACAGCAGTGCTGGGCAAGTGCCACTGCATATTCTGCTG
CAAGACGGCGCGGAGAACCCCGCGGGCGCTCATGACGATGAGACCTCGCC
TAACGTGGGGAGGGGAAAAATCAGCATGCACAAGTAGAAGATTATATGTT
CTTGCCATGGTTCTCTTTCCTAGTGCCTGGAGGCATCCTGTCTCGTGTGC
TGAAGGGAAATCCTCTTGCACTCACAAAAAAAAATTGCCCGGCACGGGCA
GACTCGTGCCTTACTTAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1172:43623..46191-

>mRNA_P-littoralis_Contig1172.3.1 ID=mRNA_P-littoralis_Contig1172.3.1|Name=mRNA_P-littoralis_Contig1172.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig1172:43623..46191- (Pylaiella littoralis U1_48)
ATGTTAGACCATGTCAAGTTGGTCAGTTGCGCCGGCAACTGGGCCCGCTC
TCTACGCGCGAGGCGTCCCACTTCGTCACCGCTGAAGCACCACAAGTGGC
AAGGCGCTCGTGTCGCTGCGCCCGTTCCCCTCAACCAGGTGGGGCTGGCG
GGGGTGCATAGACCGCGAGAATACAGCAGTGCTGGGCAAGTGCCACTGCA
TATTCTGCTGCAAGACGGCGCGGAGAACCCCGCGGGCGCTCATGACGATG
AGACCTCGCCTAACGTGGGGAGGGGAAAAATCAGCATGCACAAGTAG
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