mRNA_P-littoralis_Contig690.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig690.38.1
Unique NamemRNA_P-littoralis_Contig690.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig690.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig690contigP-littoralis_Contig690:140644..145075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size417
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_001790.1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791435.117744-CDS-P-littoralis_Contig690:140643..1406841680791435.117744-CDS-P-littoralis_Contig690:140643..140684Pylaiella littoralis U1_48CDSP-littoralis_Contig690 140644..140684 -
1680791435.134892-CDS-P-littoralis_Contig690:144590..1447731680791435.134892-CDS-P-littoralis_Contig690:144590..144773Pylaiella littoralis U1_48CDSP-littoralis_Contig690 144591..144773 -
1680791435.1465278-CDS-P-littoralis_Contig690:144882..1450751680791435.1465278-CDS-P-littoralis_Contig690:144882..145075Pylaiella littoralis U1_48CDSP-littoralis_Contig690 144883..145075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig690.38.1prot_P-littoralis_Contig690.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig690 140644..145075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig690.38.1

>prot_P-littoralis_Contig690.38.1 ID=prot_P-littoralis_Contig690.38.1|Name=mRNA_P-littoralis_Contig690.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
EAESILLLSRLDALERLVFGRSCSAAATAPSRGLEPLSAKVERISRSVAR
AEGGDRDLQHLAAQASNLGLLSPPGLPTVRAATVQNVTLKENVLYAAREE
IETTARLLSQVKILQEEHVNPPYLRGGEPCIREVRALG*
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mRNA from alignment at P-littoralis_Contig690:140644..145075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig690.38.1 ID=mRNA_P-littoralis_Contig690.38.1|Name=mRNA_P-littoralis_Contig690.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4432bp|location=Sequence derived from alignment at P-littoralis_Contig690:140644..145075- (Pylaiella littoralis U1_48)
GAGGCGGAGAGTATTTTACTCCTCAGTCGGTTAGATGCCTTAGAGCGACT
GGTCTTCGGACGATCGTGTTCTGCTGCTGCCACTGCTCCGAGCCGAGGAC
TTGAGCCTTTATCAGCCAAAGTCGAAAGGATCTCCAGGAGTGTAGCGCGA
GCGGAGGGAGGCGATCGGGATCTGCAGCATCTAGCCGCACAAGGTAATGC
CATCGTCATAGACATGAAACCATCTATTTTTTCGACAGGTGTGCGTCTCG
TATCTCCACCGATGATATAACCGCACTTACACACCTCCTGTCCGCATGCC
AGCTTCGAATCTAGGGTTACTGTCGCCGCCGGGTCTACCTACGGTGCGTG
CAGCCACCGTTCAAAACGTAACGCTCAAGGAGAACGTCTTGTACGCGGCA
AGGGAGGAGATCGAGACCACCGCGCGCTTGCTGTCGCAAGTCAAGATTTT
GCAGGAGGAGCACGTCAACCCCCCGTACCTTAGAGGTAACTGACCTCTCA
CCGGCCGGTTTTGGAATATCGAAACATTCAACCTTCGAATACCGCGCCTT
TAGCGCCGCAGGCAGCATCGCAGGTGGAGTACCAAGCAGTTTTATGGCGC
TCTTTTAGCTACTGGACTGCTGCTGTAGCGTCTCACCGAAAGCACGCACA
CGAGCACACACCTTTGTCTCTGATACCCTGCCATTATTCCATGCCCCGCA
CCCCTCTCCGCTATCAGATATGCCGCATTTGACCGACCGCTTAAGCCGAT
TGGAAGGCACGTATATTATGCAAGTGACGGAGGCAGCCCGAATCAACGAG
CATGCAGAGAACGCTCGGCTCCACTACAGTGAGGTGCAGTAACGCGGAAG
TCCTTACTCGAAATGTGCTTGATAGCAACCTGGAATCCCATCTGTTTCTC
TTGCTGTCCAATACCAAGACTTCAAAGTATTTATAGTTTATGTGTTATTC
TTAGATTGCAAGTATTGTTTACTGGTTGGTACGAACTGTGCGTAGCATGT
ATTGAGTGCGGGTGTGCTACTGCCCTTGCCTTCAAGGCGGCGTTCGATGC
CGCATCTACCGTGCTTGCCATTTCAATATTGATAAAAGCATTCCAGTGCG
TGCCCACCCTTATCACGCTGACCCAGGATTCGCCAGCGAGGGATACATGT
ATAAAAGGGTGACTCAATTTATTTCCGTATTATTAACAGGGACAGAGGTT
ACCCCCTCGCAGAGTGAGAGAAGCAGAGGAGCGGCGCACACGTCCCGTGC
GCGCTCTCCCCGTTTCCCCCACACCCATATGCCTCCGCATACCACGCCAA
CCCCCTCAACTCCCCGTGAATCATTAATCTACCGAGCACCACAAACAACC
CCCCTTTATCAGTGTCCCGTTTATTCTGGCTCGTGTCTATGCACCTTTCG
GTGGATACCTTTGACATTCAGCCGGAGTCACACGGGAGGAAAGGCCGCAC
ACGAGCCTTTTATTTTTAATTGTTTTTATTGCCTACACCTTTCCTCCTGC
GGTACTTGCCTTTGGTTTTTAATTCGAGTCGGGTTCAGCGATTCTCTCTT
TGTTTTTCGCGAATTGGTCGCTCTCCACTATAAAGTCGCAAGCAGACGCC
CTCAGAAAAAATCGATCCTGCATCCTTGCTGCTAGTAGGTCAATAAGGAA
ACCACTAGACCACACGATACAACACTTGCGAACATGCCAAGAAATGCCAA
GAAATGCCAGGAATTTTTTCTTTGAGCCAAAATTCAATTGACAAATCAAA
CATGGACTTCCCAAATTTCCCACTGTCTCAGGAAACATCAACATGCATAT
TTTTAGTCAAAAATTATTGACCTCTCGAGAAGATAATTATGAATTATCCA
AAACCCTTAAGTTATTCACGCCAAAATCTCAATCGGCCAAAACACAATAA
TACCCTCGGGAAATTACTACTTGTACTTGCAATAAGAAAATACTTCGAGA
TGAGTCTTGCTAGTTTAGTTCTACTCCAGAAAATGCGCCAATTTACCAAG
ATAAAATCCTCAGATATTATTACGTTTGAAATCCATCTACTAATCCTAGC
AAGACTTTGTGCAAGCACTCAAGCTTTAACAATGACTCATAAAAATACGC
CAAAAATCCACCCTCCAACATACCAGAAAAGGCAAAAAATAGTCAACAGA
AAAAGGTGAAACTTTCGCCAATACTTCGTACGAAGTGTTACTTTCAAGCC
CCCCCCCGCTCTGTGATGGCAAGGGAATCAAACGCAAGGAATTGTACCGG
CATGCACATTCACAACAGTGAAATAGCCTCAATCTGCTGATATTGCGAGT
AGTATCAGATGATATTCAATTCCCCCTCCCCTTTATTCTTCAAAGCAGTA
CCAAGTTACAACGAAGCCTGAAAAATCGTACCCAAAATGAAACCCAGAAT
CGAAAATATGCACATAACAAGGAAAGAAAACCGAAACCAAAAACCATATC
AAACATAGCGCATACAAAATAAACTTAGCGCATAGATTAAACAAATACGT
CGTTCCAATCTGTATCGTTCAACGTCTCAATCCAATCAAAAACCGAACAC
GAAACATCAAATGTCCGAAGCAAACAAACAAACAAAATCAAAACCAAACA
CAAACGAAACGAAACAGAAATCTGAATCCTAAAGCACCCAAAAAGCTGCG
GTTGCCTTTTGCACGCAGAATTCGATGCTGGCGACCACCAGGCACGATAA
TTCGTCACAATCCATTGCCCCGGCTCCGACCTCATCAACGCAAAATCCTG
TTTTGAAAGCCCTTCCAGGGGATATTTCATTCCGGTCAGGCTCCGTATCA
CCCCCCGTCGGCTTAGCGAGCTTGGCGGCAATGTAGCCAGTTCCAACTCC
ACATCATGCATCTGCTACAGGAGGTCTTGATGTGCGACGCGTTCCGCCCA
CGTGGCTCGATCCGCACGCCGTGTGGCTCCCACTTGTACTACCTGGACCA
ATACAGCACGCATGGTATCACAGCCCGTGTTGCTCGCTCTGATTCCACTC
TCCTATAAAGATACCTGGTATCTGTCTCAATCGGAGACAAACATTTCCAT
ACATTTTCCCAGAGGTATGTACACCTCTGTCGCTGTGCGCCCTGCCAGTT
GCCTTCCCAGTCAACACCACGGTCATTCGACGGCCGCGGCTGCAATCGGT
CCTGCCGAGCCAATACTTCGTGGAGCGCCACTCGATCCCACCGCAGGCCA
ACAACATGAGTAGAGCCAGTACCGCTGTCGACCAGGGCATGTACTGCTGT
CGACTCCGGCGGCGAGCACTGTTGCTGCCGCCGGCGCTCAAACGCGCCAC
CTGTAAAACTCTCTTACCTACACACCACAACTGAAACGCCAAAACTGCTC
TGGCCCGTTGCCCGTTTAGACGCTACACCAGTTCTCATCTTCACCATTCC
AGCAATGTTGTGCTGCCACTGATGCTGCAGCAGACCCGCGGATACTAACG
TTCTCTCCCTAGACAGCAGTAGCCACTTTCCTCCGTATAGCGACAGTGTT
TACTCTCTTTTCCTGTACAGCACTTGTCGCTACCTTTCCCGTGCTACTGT
GTGTGGTGATGCGGGCCAATCTCCAACCTCTCCTACACAAAAAAATCATA
CCAGGTTGAATATTTGCGCCTCTCACAGTCCAACGCGTCTTCTTCTCCTT
TTCTTTTTTGCCTCTTCTGTATTTCTCATACAATGCGTATATCGTACCGT
CTTTTCCCTAGCTTGTTCAGCCTGTCCTTTTGCTGTTTCCTTTACCTCTG
GTTGTTCTCCGAGACCTTTCATCTGATTTCTCGTTGCCCTTTTGCTGGTC
GATTTCCTAGACCTGGGCTCTCTCCCCCTTTCGCTTTTCACTTCCCCGTT
ACCCTCAGTTTATTATTTCTTCATCTCTCCAGCACGGTGCTTCGCCCTGG
AGCCCTGCAGAGCTTCGCCCGATATATCGTATCGTTTTTATGTATTCCAG
TGCGTACCCACGATTATCACGCCGGCGCTGCACTCGCGAGCAAGGGATAA
ACATATAAAAGGATGGCTCAATGCCTTAATCATATTATTGACAGGGAGAA
AGGCGTACTACTCGCAGCGTGAGAGACGTAGAAGAGTGCCGCACCCGACC
CGCGCGCGATCCCCCCGTTTTCTCCATACCCATATGCCTCCGCATCTCAT
GCAACCCCCCTCAACTCCCAGTGAAACATCAAATCTACCGAGTACCACGA
AAATATTAAAAGGGTTTAGATAAACTCGAGGTTTGGGTGCGACGATGATC
AAATGTTTCCATGCGAGCCGCATGTACACTACTAATAGTCAAACGCTGGT
TTCGTTCTCAAAGTTGTACTCACCTCGTGCCTCGACCCCTCACTTCTTCC
ATTCAAAACAATTTGGGAATATCCTGATTCGTTTCCATCAGGCGGTGAAC
CTTGTATCAGAGAAGTTCGTGCACTGGGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig690:140644..145075-

>mRNA_P-littoralis_Contig690.38.1 ID=mRNA_P-littoralis_Contig690.38.1|Name=mRNA_P-littoralis_Contig690.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig690:140644..145075- (Pylaiella littoralis U1_48)
GAGGCGGAGAGTATTTTACTCCTCAGTCGGTTAGATGCCTTAGAGCGACT
GGTCTTCGGACGATCGTGTTCTGCTGCTGCCACTGCTCCGAGCCGAGGAC
TTGAGCCTTTATCAGCCAAAGTCGAAAGGATCTCCAGGAGTGTAGCGCGA
GCGGAGGGAGGCGATCGGGATCTGCAGCATCTAGCCGCACAAGCTTCGAA
TCTAGGGTTACTGTCGCCGCCGGGTCTACCTACGGTGCGTGCAGCCACCG
TTCAAAACGTAACGCTCAAGGAGAACGTCTTGTACGCGGCAAGGGAGGAG
ATCGAGACCACCGCGCGCTTGCTGTCGCAAGTCAAGATTTTGCAGGAGGA
GCACGTCAACCCCCCGTACCTTAGAGGCGGTGAACCTTGTATCAGAGAAG
TTCGTGCACTGGGATGA
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