mRNA_P-littoralis_Contig690.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig690.23.1
Unique NamemRNA_P-littoralis_Contig690.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig690.23.1 vs. uniprot
Match: D7G1P0_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P0_ECTSI)

HSP 1 Score: 863 bits (2230), Expect = 3.090e-310
Identity = 447/630 (70.95%), Postives = 499/630 (79.21%), Query Frame = 1
Query:    1 EEKSSSVCFNNCSGHGRCIDYTCECDVGYDGDDCSFCFFDGGESVHPILSVGDVNLTSLNFRETLRDVENLLVVATSRSCHRCLHLEMEYHAARSDLKEAGVLLGRVDADSERALFGDILEGFEAAAKHLPLIILWAASRKSRQFLLYDGAHERNDIVEFVHKQLGLPVRKLTSVSAVEKFVENPRFQAMGTTSSTVVSVVGFFSDAGEMEEDDMEDFMEAAADLNARSDIYFGVVNDAAICRHFKKLGWIQRASEAVLTRPGLLRAPSLTIWALLEDNSSVQDWIVKESLPLVGRLSNANFAQYERTHLPMLIMFLELPGSHGASSAPGSRIGGMSGGVRNDDLVTELMEVALEHKGRVTCLYADGTAFADSMKTLGLFGGRERLPQVGFNTMDGRQLPFPEDLPINRETLLHFTAAFLSGRLQSSLDAKKAMTVSRPFSALNTVTRKNKRGAPVEVRGVSEQLKPKDAIMQAGQLLKICYTQENFSRMVLDNDKDVLLMFHAEASDPLCSNMIPYYKRVGERFLDLDVSSVLVAAMDVTLETPPPEVAITLPTLPAIVLLAGDNKEAPFRFFSGVGKVGPLMRWLQEHASTSFELPVLPHLTEADKPLFRKQVRERQELQTARTITQS 1890
            ++   SVCFNNCSG GRCIDYTCECD GYDGDDCSFC+ DGG++V PILSVGDVNLTS NFRETL +   LLVVATS SCHRC+HLE EY +A  +LKE GV++GR+DAD+ERAL G IL G EAAA+HLP I+LW  +RKSR+ LLYDGAHER+ IVE+V KQL  P ++LT+++AVE F+++P+F A+GT  S  V+VVGFFS AGEMEED++EDFMEAA DL  R                                 PGL RAPSLT+WA+LEDN S QDW+V+ESLPLVGRLSNANFAQYERTHLPMLIMFLELP S  A SA GSRIGG SGGVRND+LV EL EVALEHKG +TCLYADG A ADSMKTLGLFG RERLPQVGFNTMDGRQLPFPEDLPINRETLLHF AAFLSGRLQS+LDA+KAM VSRPFSA NTV RK++R  P EVRGVSEQLKPKDAI Q         T+E+F+R VLDNDKDVLLMFHAE              RVGERFLDLD+ SVL+AAMDVTLETPPPEVA+TLPTLPAIVLL GD+KEAPFRFFSGVGKVGPLMRWLQEH+ST FELP LPHL+E DKPLFRKQVRERQEL  AR   +S
Sbjct:   34 DDAGQSVCFNNCSGRGRCIDYTCECDAGYDGDDCSFCYLDGGDTVLPILSVGDVNLTSSNFRETLHNAGRLLVVATSPSCHRCIHLETEYQSASVELKEKGVIIGRIDADAERALLGRILGGVEAAAQHLPAILLWTETRKSRKALLYDGAHERHSIVEYVRKQLEPPAKRLTTITAVENFIKDPQFGALGTAPSEAVTVVGFFSGAGEMEEDELEDFMEAATDLKPR---------------------------------PGLSRAPSLTLWAILEDNLSFQDWVVRESLPLVGRLSNANFAQYERTHLPMLIMFLELPDSFAAGSAHGSRIGGKSGGVRNDELVKELKEVALEHKGSITCLYADGVALADSMKTLGLFGSRERLPQVGFNTMDGRQLPFPEDLPINRETLLHFAAAFLSGRLQSALDARKAMVVSRPFSAHNTVRRKDRRETPTEVRGVSEQLKPKDAITQV--------TRESFARTVLDNDKDVLLMFHAE--------------RVGERFLDLDIPSVLIAAMDVTLETPPPEVAMTLPTLPAIVLLPGDDKEAPFRFFSGVGKVGPLMRWLQEHSSTPFELPALPHLSEEDKPLFRKQVRERQELLNARASQES 608          
BLAST of mRNA_P-littoralis_Contig690.23.1 vs. uniprot
Match: A0A6H5LBD4_9PHAE (EGF-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBD4_9PHAE)

HSP 1 Score: 728 bits (1878), Expect = 2.560e-255
Identity = 411/730 (56.30%), Postives = 471/730 (64.52%), Query Frame = 1
Query:    1 EEKSSSVCFNNCSGHGRCIDYTCECDVGYDGDDCSFCFFDGGESVHPILSVGDVNLTSLNFRETLRDVENLLVVATSRSCHRCLHLEMEYHAARSDLKEAGV------------------LLGRVDADSERALFGDILEGFEAAAKHLPLIILWAASRKSRQFLLYDGAHERNDIVEFVHKQLGLPVRKLTSVSAVEKFVENPRFQAMGTTSSTVVS-------------------------VVGFFSDAGEMEEDDMEDFMEAAADLNARSDIYFGVVNDAAICRHFKKLGWIQRASEAVLTRPGLLRAPSLTIWALLEDNSSVQDWIVK-------------------------ESLPLVGRLSNANFAQYERTHLPMLIMFLELPGSHGASSAPGSRIGGMSGGVRNDDLVTELMEVALEHKGRVTCLYADGTAFADSMKTLGLFGGRERLPQVGFNTMDGRQLPFPEDLPINRETLLHFTAAFLSGRLQSSLDAKKAMTVSRPFSALNTVTRKNKRGAPVEVRGVSEQLKPKDAIMQAGQLLKICYTQENFSRMVLDNDKDVLLMF---HAEASDPLCSNMIPYYKRVGERFLDLDVSSVLVAAMDVTLETPPPEVAITLPTLPAIVLLAGDNKEAPF-----------------------------RFFSGVGKVGPLMRWLQEHASTSFELPVLPHLTEADKPLFRKQVRERQELQTARTITQS 1890
            ++   SVCFNNCSGHGRCIDYTCECD GYDGDDCSFC+ DGG++V PILSVGDVNLTS NFR+TL D  +LLVVATS SCHRC+HLE EY +A ++L+  GV                  +LGRV+AD+E AL G IL G EAAA+HLP+I+LW  +RKSR+ LLYDGAHER+ IVE+V KQL  P + L +++AVE FV+ P+F A+GT  S  V+                         +VGFFS AGEMEE+++EDFMEAA DL  RSD+YFG V+D  +C HFKKLGWIQRASEAVLTRPGL RAPSLT+WA+LEDN S+QDW+V+                         ESLPLVGRLSNANFAQYERTHLPMLIMFLELPGS                                                            RERLPQVGFNTMDGRQ+PFPEDLPINRETLLHF AAFLSGRLQS+LDA+KAM VSRPFSA NTV RK++RG P EVRGVSEQLKPKDAI Q     K+    +   R     DK  L  F   H+     L   ++   +RVGERFLDLD+ SVL+AAMDVTLETPPPEVA+TLP LPAIVLL GD+KEAPF                             RFFSGVGKVGPLMRWLQEH+ST FELP LPHL+E DKPLFRKQVRERQ L  AR   +S
Sbjct:   36 DDAGQSVCFNNCSGHGRCIDYTCECDAGYDGDDCSFCYIDGGDTVLPILSVGDVNLTSSNFRKTLHDAGSLLVVATSPSCHRCIHLETEYQSASAELQGKGVRFGPASSTNASGTFQQTIVLGRVNADAELALLGRILGGVEAAAQHLPVILLWTETRKSRKALLYDGAHERHAIVEYVRKQLEPPAKSLATITAVENFVKGPQFGALGTAPSEAVTARRSDDSYILSNSVRNLGCSPNRSKIVGFFSGAGEMEENELEDFMEAATDLKPRSDVYFGFVDDEVVCGHFKKLGWIQRASEAVLTRPGLSRAPSLTLWAILEDNLSIQDWVVRGEMRPTRCMNRSFMRLMQPVFGCLQESLPLVGRLSNANFAQYERTHLPMLIMFLELPGS------------------------------------------------------------RERLPQVGFNTMDGRQIPFPEDLPINRETLLHFAAAFLSGRLQSALDARKAMVVSRPFSAHNTVRRKDRRGTPTEVRGVSEQLKPKDAITQTTG--KVRLRAQGSHRSWRGVDKKQLETFASGHSITQSCLLVLLL-VIQRVGERFLDLDIPSVLIAAMDVTLETPPPEVAMTLPPLPAIVLLPGDDKEAPFSPPERFLPGRSPDITPPLPFSSPRVPNDYRFFSGVGKVGPLMRWLQEHSSTPFELPALPHLSEEDKPLFRKQVRERQHLLNARASQES 702          
BLAST of mRNA_P-littoralis_Contig690.23.1 vs. uniprot
Match: A0A836C9X9_9STRA (Thioredoxin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X9_9STRA)

HSP 1 Score: 436 bits (1122), Expect = 1.380e-142
Identity = 259/588 (44.05%), Postives = 359/588 (61.05%), Query Frame = 1
Query:  139 PILSVGDVNLTSLNFRETLRDVEN-LLVVATSRSCHRCLHLEMEYHAARSDLKEAGVLLGRVDADSERALFGDILEGFEAAAKHLPLIILW-----AASRKSRQFLLYDGAHERNDIVEFVHKQLGLPVRKLTSVSAVEKFVENPRFQAMGTTSSTVVSVVGFFSDAGEMEEDDMEDFMEAAADLNARSDIYFGVVNDAAICRHF--KKLGWIQRASEAVLTRPGLLRAPSLTIWALLED--NSSVQDWIVKESLPLVGRLSNANFAQYERTHLPMLIMFLELPGSHGASSAPGSRIGGMSGGVRNDDLVTELMEVALEHKGRVTCLYADGTAFADSMKTLGLFGGRERLPQVGFNTMDGRQLPFPEDLPINRETLLHFTAAFLSGRL-QSSLDAKKAMTVSRPFSALNTVTRKNKRGA---PVEVRGVSEQLKPKDAIMQAGQLLKICYTQENFSRMVLDNDKDVLLMFHAEASDPLCSNMIPYYKRVGERFLDLDVSSVLVAAMDVTLETPPPEVAITLPTLPAIVLLAGDNKEAPFRFFSGVGKVGPLMRWLQEHASTSFELPVLPHLTEADKPLFRKQVRERQE 1860
            P+LS G  NLT+ ++   +R     LLV   S +C +C  LE EY AA   LK  GV L RV+ + ER L   +    E +   LP ++       A++R S   ++Y GAH  NDIVEFV KQL  P   L + +AV+ F+E       G  S +V  V+G FSD   ME+DD+ DFM+AA +L  R+DIYFG ++DA + R +  +K  W  R     L RPG+L  P       L D  ++S+ DWI++ S+P VGRL++ +F  YER  LPMLIM L+L G   A S         SGG+ N  L+ EL  VALE +GR++ +YADG AF+DSM++LGLFG R+ LPQ+  NT D R+ PFP  LP+NRETL  F  AFLSGRL + S DA  A+   +P     T  R+N +G    P EV G++EQ + +DA+++   L        NF  + +  D+DVLL+FH + S+  C+++IP+YKRVG RF +L +++V +A MDVT   PP   A+TLP LPAI+LL  D+K  P+RF+SG GK   +M+WLQ+HAS  FELP +PHL+ AD+ L+ KQ+++R+E
Sbjct:   25 PVLSAGHFNLTAASYAAAVRKQRGGLLVGFASPACEKCAVLEPEYEAAAQQLKAMGVPLARVNTEKERHLLASVAT--ETSRPSLPCLLFHDPPGRASARASP--VVYKGAHSANDIVEFVRKQLASPSAALRNAAAVDAFLER------GGASGSVTRVLGLFSDGNGMEDDDLSDFMDAARELQGRADIYFGHIDDALLAREYVGRKGEWPVRTPAVALLRPGMLEEPLSIHLDTLADAADASLSDWILRSSVPTVGRLTHGSFGLYERLGLPMLIMLLDLEGGLQAGS---------SGGLPNSSLLAELEAVALELRGRMSFVYADGVAFSDSMRSLGLFGTRQDLPQLAVNTRDARRFPFPHALPVNRETLGTFCGAFLSGRLKEGSADAATAL---QPAKKSRTNARQNAKGKVVLPGEVPGIAEQFREEDAVVEVTAL--------NFDAVAMREDRDVLLLFHQQESEA-CAHIIPHYKRVGLRFAELSIATVTIARMDVTAAAPPATHALTLPPLPAILLLPADDKGPPYRFYSGKGKTAAIMQWLQQHASRHFELPPVPHLSGADRVLYYKQLKQREE 581          
BLAST of mRNA_P-littoralis_Contig690.23.1 vs. uniprot
Match: A0A482SA20_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SA20_9ARCH)

HSP 1 Score: 411 bits (1057), Expect = 3.280e-131
Identity = 245/629 (38.95%), Postives = 368/629 (58.51%), Query Frame = 1
Query:    1 EEKSSSVCFNNCSGHGRCIDYTCECDVGYDGDDCSFCFFDGGESVHPILSVGDVNLTSLNFRETLRDVENLLVVATSRSCHRCLHLEMEYHAARSDLKEAGVLLGRVDADSERALFGDILEGFEAAAKHLPLIILWAASRKSRQFLLYDGAHERNDIVEFVHKQLGLPVRKLTSVSAVEKFVEN---PRFQAMGTTSSTVVSVVGFFSDAGEMEEDDMEDFMEAAADLNARSDIYFGVVNDAAICRHFKKLGWIQRA-SEAVLTRPGLLRAPSLTIWALLEDNSSVQDWIVKESLPLVGRLSNANFAQYERTHLPMLIMFLELPGSHGASSAPGSRIGGMSGGVRNDDLVTELMEVALEHKGRVTCLYADGTAFADSMKTLGLFGGRERLPQVGFNTMDGRQLPFPEDLPINRETLLHFTAAFLSGRLQSSLD-----AKKAMTVSRPFSALNTVTRKNKRGAPVEVRGVSEQLKPKDAIMQAGQLLKICYTQENFSRMVLDNDKDVLLMFHAEASDPLCSNMIPYYKRVGERFLDLDVSSVLVAAMDVTLETPPPEVAITLPTLPAIVLLAGDNKEAPFRFFSGVGKVGPLMRWLQEHASTSFELPVLPHLTEADKPLFRKQVRERQE 1860
            E    SVCFN+C+GHG CIDY+C C  GY GDDC   F D    + PIL+ G  N+T  N  +T+     LL+  +S SCH+C+  E  Y      L +  +   R DA+  ++         E  A  LP ++L    R     +LY G H  + I++F+ KQ G PV +L SV+ V+ F+ +   P F      S + V  VGFFS+  ++EED+ E+F+  A +L    D+YF VV D  IC+ FK+   I R  S  +L    +L   S+ I  L  +   +++WI  +S+PLVG+++N NFA YE+ + PML+MFL+L  +H  ++     IGG SGGV N+ L+ EL  VA E+  ++   Y DGT + D MK+LGL+GGRERLP + FNT DG ++PFPEDLPIN ETL  F A FL G+L+++ D     ++    V+   S  N VTRK ++ AP  V+GV+EQ    D  +    +  +  T  NF  +V++ +KDV+L+ HA+  +  C++   Y+KR+  RF ++++ ++ +A MDVT ++PP    + +  LP +++L    K +P+ F+SGVGKV  +M+W+Q +    F LP LPHLT  ++ L+++QVRER+E
Sbjct:   31 EAADGSVCFNDCNGHGECIDYSCFCHPGYLGDDCGTTFADESNII-PILTAGHFNVTRKNITQTISKHPVLLIGFSSYSCHKCIAAEPVYEQVTEALAKRKIPFARADAEKLKSFAA------EFGALELPSLVLTIKMRP----VLYKGVHSIDAIMKFIDKQTGPPVVRLNSVAEVQNFLSSRSKPEF------SLSAVMTVGFFSEHEDIEEDEYEEFVTTAKELQTNEDLYFAVVTDRKICKAFKQNKTIDRTPSVLMLGESEVLH--SINIDELFGEKMGLKEWITAKSIPLVGKITNKNFALYEKANKPMLLMFLDL--THEFATDTYGIIGGKSGGVLNEALLDELRLVAKEYD-KILFGYLDGTQYEDQMKSLGLYGGRERLPSIAFNTRDGTKVPFPEDLPINYETLTQFCADFLLGKLRTATDLTLMKSRALQRVATSQSNKNYVTRKKRKAAPEVVQGVAEQFG--DGRLGDEYVKNVNLT--NFDDIVMNEEKDVVLLLHAQECEK-CAHFAVYFKRMAMRFGEMNLPTLTIARMDVTNDSPPAHYQLMVGPLPLMLMLPVGRKHSPWTFYSGVGKVQQMMKWVQSNVGVDFTLPNLPHLTPKERELYKQQVREREE 632          
BLAST of mRNA_P-littoralis_Contig690.23.1 vs. uniprot
Match: A0A8J2SL09_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL09_9STRA)

HSP 1 Score: 322 bits (825), Expect = 1.370e-97
Identity = 225/645 (34.88%), Postives = 337/645 (52.25%), Query Frame = 1
Query:    7 KSSSVCFNNCSGHGRCIDYTCECDVGYDGDDCSFCFFDGGESVHPILSVGDVNLTSLNFRETLRDVENLLVVATSRSCHRCLHLEMEYHAARSDLKEAGVLLGRVDADSERALFGDILEGFEAAAKHLPLIILWAASRKSRQFLLYDGAHERNDIVEFVHKQLGLPVRKLTSVSAVEKFVENPRFQAM----------------GTTSSTVVSVVGFFSDAGEMEEDDMEDFMEAAADLNARSDIYFGVVNDAAICRHFKKLGWIQRASEAVLTRPGLLRAPSLTIWALLEDNSSVQ--DWIVKESLPLVGRLSNANFAQYERTHLPMLIMFLELPGSHGASSAPGSRIGGMSGGVRNDDLVTELMEVALEH--KGRVTCLYADGTAFADSMKTLGLFGGRERLPQVGFNTMD-GRQLPFPEDLPINRETLLHFTAAFLSGRLQSSLDAKKAMTVSRP---FSALNTVTRKNKRGAPVEVRGVSEQLKPKDAIMQAGQLLKI----CYTQENFSRMVLDNDKDVLLMFHAEASDPLCSNMIPYYKRVGERFLDLDVSSVLVAAMDVTLETPPPEVAITLPTLPAIVLLAGDNKEAPFRFFSGVGKVGPLMRWLQEHASTSFELPVLPHLTEADKPLFRKQVRERQ 1857
            +   +CFN CSGHG C ++ C C+ G+ GDDCS     GG +    L+ G  N+T+ N+ + L+  + + +   SRSC RC+  E  Y AA   LK+ GV L R DAD     F ++L+  +  +  +P ++ +    +    + Y G H  N++V F  K        L+S++A   F+     QA                  T   T   V+G FSD  ++E+++  +FM AA++   R D+YF  V+D  I +     G+  R    ++   G L      +  +L+D   +    W+  E+LP VG L++ NFA+YE    PML++FL+L G        G  + G+SGGV N DLV E   V  +   + RV   Y DG A  D MK LGLFGG  RLP V  N  + G   P+PE LP++R  L  F  AFL+ RL+S  D+  A  + R    F A     RK ++    EV G  E    +D+I +A ++ KI       ++NF+  + +  KDVL++FH E  +  C+ +  YYK++ ERF  L + S+++A  DVT ETPP +  I  P LP IVLL   +K  PFRF+SG+GKV P+M+W+Q  +  +F+LP L HL  ++   ++ QV ER+
Sbjct:   47 EEGKICFNGCSGHGACANFVCSCEPGWTGDDCSHSLV-GGNATVQTLTAGHFNVTAKNWTKLLKKKDVVFIAFGSRSCLRCVGAEGAYAAAAPLLKKMGVPLARADADEP--FFRELLQDLQLGS--MPQVVAY----RKLFAMPYAGLHAPNELVAFAQKLKQAAAPSLSSLNAALTFLGVDSEQARRALYDETGIEEEVTEEDTLPGTAARVLGLFSDI-DIEDEESAEFMVAASERRQRHDVYFSRVDDPEISQALIDAGFADRTPAVIVANDGRL------VSHVLDDAPDIGLGPWVDAETLPAVGELTHQNFARYEALSRPMLLLFLDLRGHD-----RGMELSGLSGGVPNRDLVEEFKAVRRDESFRDRVAFAYVDGVAQQDRMKALGLFGGARRLPAVAVNAKEEGVIAPYPESLPLDRAHLRDFLGAFLARRLRSKEDSD-AFALQRQNDVFDAKWLPKRKPRKKPTEEVMGRYEVF-GEDSI-RAREVGKIDDVFVLNRDNFAEALAE--KDVLILFHEEGCEA-CAALTVYYKKMAERFASLKIPSLVIARFDVTKETPPLDGLIAGP-LPVIVLLPAHDKRPPFRFYSGLGKVQPMMKWVQASSDIAFDLPELCHLDPSEIEAYKHQVTERE 663          
BLAST of mRNA_P-littoralis_Contig690.23.1 vs. uniprot
Match: A0A7R9UBX9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBX9_9STRA)

HSP 1 Score: 285 bits (729), Expect = 3.480e-83
Identity = 223/681 (32.75%), Postives = 325/681 (47.72%), Query Frame = 1
Query:   16 SVCFNNCSGHGRCIDYTCECDVGYDGDDCSFCFFDGGESVHPILSVGDVNLTSL-NFRETLRDVEN--------------------------LLVVATSRSCHRCLHLEMEYHAARSDLKEAGVLLGRVDADSERALFGDILEGFEAAAKHLPLIILWAASRKSRQFLLYDGAHERNDIVEFVHKQLGL-PVR-KLTSVSAVEKFVENPRFQAMGTTSSTVVS--VVGFFSDAGEMEEDDMEDFMEAAADLNARSDIYFGVVNDAAICRHFKKLGWIQRASEAVL----------TRPGLLRAP----------SLTIWALL---------------EDNSSVQDWIVKESLPLVGRLSNANFAQYERTHLPMLIMFLELPGSHGASSAPGSRIGGMSGGVRNDDLVTELMEVALEHKGRVTCLYADGTAFADSMKTLGLFGGRERLPQVGFNTMDGRQLPFPEDLPINRETLLHFTAAFLSGRLQSSLDAKKAMTVSRPFSALNTVTRKNKRGAPVEVRGVSEQLK--PKDAIMQAGQLLKICYTQENFSRMVLDNDKDVLLMFHAEASDPLCSNMIPYYKRVGERFLDLDVSSVLVAAMDVTLETPPPEVA---ITLPTLPAIVLLAGDNKEAPFRFFSGVGKVGPLMRWLQEHASTSFELPVLPHLTEADKPLFRKQV 1845
            SVC N CS HGRC++Y CEC+ G+ G DC + F        P+LSVG  N+TS  +F+  LR  +                           +L+  +S SCH+C   E EY    +    A + L  +  D+       + + +      LP ++L+   R    +  Y+G      ++ F+ KQ+ L PV  +LT V  V +F+     +   +    VV+  VVG F D+ +ME+++ E+F EAA     R D+YF  V    +       G++ R    +L           R     A           S  +W++L               +   SV  W+ + S+P + +L+  NFA Y    LPML++FL+L G  G          G SG ++N  L+ E   VA E +GR+ C++ADG AFAD MK LG+ GG   LP + +NT+D R++ FPED  INRETL  F   FL+G++ S  DA K +   R  SA N   R  +   P E+ GV E     P D ++          T EN+  + +D  KDV++MFH   S   C+N  PYY++VGERF  L V SV+VA  DVT   PP       I    LP ++LL    K+A   ++SGVGKV  +M W++ +A   F+LP L HLT   +  +  QV
Sbjct:   46 SVCLNRCSSHGRCVNYVCECEAGWHGADCRYNFG------LPVLSVGHGNVTSAGDFKALLRSHKRSRKSKKTSGEKAEELGSLAEFSSRRWVLLGVSSTSCHKCSAKEDEYDRLMALPGFAELDLAFLRLDAAVPALHQLAKRYGLGTT-LPYLMLF---RDGAFWSGYEGRSGAKYMLLFLQKQMLLEPVSARLTEVQRVRQFLNGEGGEGEDSLDPGVVATYVVGVFRDS-DMEDEEFEEFEEAADGFQKRHDVYFASVVGGKLADALIAEGYVDRTPSLLLQYSRGVEHSWAREDDTDAEFGVGTVGHRVSRRLWSVLPRAITASFEELSMADDMEQSVDGWVKRNSIPALQQLTPTNFAMYAGLGLPMLMLFLDLTG--GVEK-------GSSGQLQNRRLLEEFYPVAKEFRGRIFCVFADGVAFADRMKVLGINGGASSLPALAWNTLDNRKVAFPEDASINRETLSRFVVHFLNGKIASQEDAAKVIAEVRVSSA-NKPKRPPRPAPPEEITGVQEMFDGVPNDHVLPL--------TPENWDTIAMDEYKDVVVMFHDRTSKA-CANFTPYYRKVGERFSALSVPSVVVARYDVTDVDPPRHEMRSDILAGNLPVLILLPAYQKDAVL-YYSGVGKVPDIMSWVERNAGVPFKLPRLAHLTPEQRVEYEIQV 695          
BLAST of mRNA_P-littoralis_Contig690.23.1 vs. uniprot
Match: A0A7S3UPC4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPC4_HETAK)

HSP 1 Score: 242 bits (618), Expect = 3.330e-70
Identity = 138/319 (43.26%), Postives = 198/319 (62.07%), Query Frame = 1
Query:  940 IMFLELPGSHGASSAPGSRIGGMSGGVRNDDLVTELMEVALEHKGRVTCLYADGTAFADSMKTLGLFGGRERLPQVGFNTMDGRQLPFPEDLPINRETLLHFTAAFLSGRLQSSLDA----KKAMTVSRPFSALNTVTRKNKRGAPVEVRGVSEQLKPKDAIMQAGQLLKICYTQENFSRMVLDNDKDVLLMFHAEASDPLCSNMIPYYKRVGERFLDLDVS-------SVLVAAMDVTLETPPPEVAITLPT-LPAIVLLAGDNKEAPFRFFSGVGKVGPLMRWLQEHASTSFELPVLPHLTEADKPLFRKQVRERQE 1860
            +MFL L G+    +     + G +G + N++LV EL E A +H GR++ +Y DG   AD MK LGL+GG+ERLP +  NT DG++LPFPE LPINR+T+L F A +LSGR+ +  DA    KKA+  +  F+  N   R+ ++  P E  G+SEQ K KD ++Q         T +NF  +VLD D+DV+++F ++  +  CS+M PYYKR+G RF +L+         +V V  MD+  +TPP   A  L   LP +VL    +K APFR++SGV KV P+M W+ +H+ +   LP LPHL E D+ LF++QVRER+E
Sbjct:    1 MMFLNLQGT--VVNPLADYVPGKTGNLSNNELVMELREAAKDHFGRISFVYIDGIEHADRMKALGLYGGQERLPALALNTKDGKKLPFPEVLPINRDTILQFCADYLSGRMNNEDDAQEMAKKALMATN-FNRKNQAQRQERKKPPEEKTGISEQWKKKDPVVQI--------TSDNFEEIVLDEDRDVVVLFTSKECES-CSHMTPYYKRLGRRFAELEQEEGGLGGGNVTVGVMDLADDTPPLGYATVLVADLPLVVLFPARDKGAPFRYYSGVSKVRPMMEWVAQHSGSGVVLPRLPHLNEEDRQLFKEQVREREE 307          
BLAST of mRNA_P-littoralis_Contig690.23.1 vs. uniprot
Match: A0A7S3HHL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHL5_9STRA)

HSP 1 Score: 238 bits (608), Expect = 2.680e-69
Identity = 137/359 (38.16%), Postives = 204/359 (56.82%), Query Frame = 1
Query:    1 EEKSSSVCFNNCSGHGRCIDYTCECDVGYDGDDCSFCFFDGGESVHPILSVGDVNLTSLNFRETLRDVENLLVVATSRSCHRCLHLEMEYHAARSDLKEAGVLLGRVDADSERALFGDILEGFEAAAKHLPLIILWAASRKSRQFLLYDGAHERNDIVEFVHKQLGLPVRKLTSVSAVEKFVENPRFQAMGTTSSTVVSVVGFFSDAGEMEEDDMEDFMEAAADLNARSDIYFGVVNDAAICRHFKKLGWIQRASEAVLTRPGLLRAPSLTIWALLEDNSSVQDWIVKESLPLVGRLSNANFAQYERTHLPMLIMFLELPGSHGASSAPGSRIGGMSGGVRNDDLVTELMEVALEHKGR 1077
            E    SVCFNNC+GHG CIDY+C C  G+ GDDC   F D  + V PILS G  N+T  NF + +   + +LV  +S +CH+C+ +E  Y    + L+E  +  GR DAD  +++  ++       A  LP ++L+   R     +LY GAH    ++ +++KQL  P + L +V+ V  F+++      G ++S  V   GFFS+  E+EEDD ++F+E A +L    D YFGVV   A    FKK   I R    ++   G +R  ++ +  L  DN+ +Q WIVK SLPLVG+++ ANF  YE+  LP+L++FL+L   H  +S PG  +GG SG + N+ L+ E    A EH+ R
Sbjct:   24 EAADGSVCFNNCNGHGECIDYSCHCFTGFIGDDCGTTFADANDIV-PILSAGHFNITRKNFTQVVSKHKLILVGFSSYNCHKCIQIEPSYRNISNQLRELNIPFGRADADKMKSIVAEV------GATDLPALVLFQKMRP----ILYKGAHSTEAVMTYINKQLSPPAKVLKTVADVTNFLDSRTSANHGISTSMTV---GFFSEHEEVEEDDYQEFIEVAKELQLNEDNYFGVVTSPATASWFKKNKTIDRTPAVLMEGEGGIRH-TINLDELYGDNAGLQSWIVKNSLPLVGKMTGANFLMYEKQGLPILMLFLDLTDEH--TSQPGF-VGGKSGEIYNEILLEEFRLAAKEHQHR 364          
BLAST of mRNA_P-littoralis_Contig690.23.1 vs. uniprot
Match: A0A7S2RV49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV49_9STRA)

HSP 1 Score: 201 bits (512), Expect = 4.790e-55
Identity = 130/350 (37.14%), Postives = 191/350 (54.57%), Query Frame = 1
Query:    4 EKSSSVCFNNCSGHGRCIDYTCECDVGYDGDDCSFCFFDGGES--VHPILSVGDVNLTSLN-FRETLRDVENLLVVATSRSCHRCLHLEMEYHAARSDLKEAGVLLGRVDADSERALFGDILEGFEAAAKHLPLIILWAASRKSRQFLLYDGAHERNDIVEFVHKQLGLPVRKLTSVSAVEKFVENPRFQAMGTTSSTV-------------------------VSVVGFFSDAGEMEEDDMEDFMEAAADLNARSDIYFGVVNDAAICRHFKKLGWIQRASEAVLTRPGLLRAPSLTIWALLEDNSSVQDWIVKESLPLVGRLSNANFAQYERTHLPMLIMFLELPGSH 969
            +   SVCFN+CSGHG C+D++CEC +GY GDDC + F D G    V PIL  G  N++S   FR   R    +LV  +S+SCH+C+  E +Y  A   L++  V  GR +A    A F + ++  EA    LP ++ +   RK +  LLY G+ + + +V F  K L   V  L SV    +F+++ R   +G+    V                         +SV+GFF D   +E+++  DF+EA   L  R+D++ GVV+  A+  HF +   I R+   VL R G L + SL +     +  S+ +WI KE+LPLVGRL+ +NFAQYERT +PML++FL+L  SH
Sbjct:   41 DSGGSVCFNDCSGHGHCVDFSCECFLGYFGDDCRYSFADDGRDGPVIPILGAGHFNISSRKKFRTVTRSPRLMLVGFSSQSCHKCIMFERDYMEASEHLRDLSVPFGRSNA----AKFPEEVQ--EAGVTDLPALVFY---RKGKAPLLYVGSQDAHSVVSFARKLLMPTVSPLRSVDDAIEFLQH-RAGHLGSEDQGVAAVHPPVGMPAEEVPWRTLQRPGDSISVLGFFRDPHGIEDEEYMDFIEAVEPLKDRNDVFVGVVSAEAVVVHFIRRDLIDRSPSVVL-RAGSL-SKSLNLDEFYGEGGSLSEWISKEALPLVGRLAPSNFAQYERTGMPMLMLFLDLSESH 378          
BLAST of mRNA_P-littoralis_Contig690.23.1 vs. uniprot
Match: A0A7S3HI02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HI02_9STRA)

HSP 1 Score: 192 bits (488), Expect = 2.560e-53
Identity = 99/252 (39.29%), Postives = 161/252 (63.89%), Query Frame = 1
Query: 1018 VRNDDLVTELMEVALEHKGRVTCLYADGTAFADSMKTLGLFGGRERLPQVGFNTMDGRQLPFPEDLPINRETLLHFTAAFLSGRLQSSLDAK----KAMTVSRPFSALNTVTRKNKRGAPVEVRGVSEQLKPKDAIMQAGQLLKICYTQENFSRMVLDNDKDVLLMFHAEASDPLCSNMIPYYKRVGERFLDLDVSSVLVAAMDVTLETPPPEVAITLPTLPAIVLLAGDNKEAPFRFFSGVGKVGPLMRWL 1761
            + N+ L+ E    A EH+ R+  +Y +G    D MK+LGL+GG+ERLP + FNT DG Q+PFPE+LP+N++T+L F A F+SG+++S+ DAK    KA+  + P +  N   RK  + AP  V+G+SEQ    D I   G    +  T +NF  +VL++ KDV+L+ HA+  +P C++   Y+KR+ +RF  + V ++ +A MDV+ E+PP ++ + + TLP + ++   +K  P+ F+SG+ KV  +M+W+
Sbjct:    2 IYNEILLEEFRLAAKEHQHRILFVYLNGVEHQDQMKSLGLYGGKERLPSLAFNTRDGAQVPFPEELPVNKDTILQFCADFISGKVRSADDAKEMAKKALQSALPINPKNQAVRKAPKKAPAVVQGISEQFG--DGIR--GDQAVVTVTLKNFDEIVLNDQKDVVLLLHAQDCEP-CAHFAVYFKRMADRFEAMGVRNLTIARMDVSHESPPKDMNLMVGTLPILAMIPATDKLPPWTFYSGISKVQQMMKWV 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig690.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G1P0_ECTSI3.090e-31070.95EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5LBD4_9PHAE2.560e-25556.30EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A836C9X9_9STRA1.380e-14244.05Thioredoxin domain-containing protein n=1 Tax=Trib... [more]
A0A482SA20_9ARCH3.280e-13138.95Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J2SL09_9STRA1.370e-9734.88Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9UBX9_9STRA3.480e-8332.75Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3UPC4_HETAK3.330e-7043.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3HHL5_9STRA2.680e-6938.16Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2RV49_9STRA4.790e-5537.14Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3HI02_9STRA2.560e-5339.29Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig690contigP-littoralis_Contig690:61592..68808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G1P0
PFAMsEvr1_Alr,Thioredoxin,Thioredoxin_6
Model size1893
Max annot lvl2759|Eukaryota
KEGG koko:K01829,ko:K09580,ko:K10758,ko:K13996
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons13
Evalue5.07e-311
EggNOG OGsCOG0526@1|root,KOG0190@2759|Eukaryota
EC1.8.3.2,5.3.4.1
Descriptionintramolecular oxidoreductase activity, transposing S-S bonds
Cds size1893
COG categoryCO
BRITEko00000,ko00001,ko01000,ko03110,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig690.23.1prot_P-littoralis_Contig690.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig690 61592..68808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791434.4077282-CDS-P-littoralis_Contig690:61591..617691680791434.4077282-CDS-P-littoralis_Contig690:61591..61769Pylaiella littoralis U1_48CDSP-littoralis_Contig690 61592..61769 -
1680791434.426726-CDS-P-littoralis_Contig690:61980..621381680791434.426726-CDS-P-littoralis_Contig690:61980..62138Pylaiella littoralis U1_48CDSP-littoralis_Contig690 61981..62138 -
1680791434.4373863-CDS-P-littoralis_Contig690:62389..624171680791434.4373863-CDS-P-littoralis_Contig690:62389..62417Pylaiella littoralis U1_48CDSP-littoralis_Contig690 62390..62417 -
1680791434.446836-CDS-P-littoralis_Contig690:62627..627051680791434.446836-CDS-P-littoralis_Contig690:62627..62705Pylaiella littoralis U1_48CDSP-littoralis_Contig690 62628..62705 -
1680791434.4591486-CDS-P-littoralis_Contig690:62893..631991680791434.4591486-CDS-P-littoralis_Contig690:62893..63199Pylaiella littoralis U1_48CDSP-littoralis_Contig690 62894..63199 -
1680791434.477216-CDS-P-littoralis_Contig690:63329..634061680791434.477216-CDS-P-littoralis_Contig690:63329..63406Pylaiella littoralis U1_48CDSP-littoralis_Contig690 63330..63406 -
1680791434.4872155-CDS-P-littoralis_Contig690:63575..636821680791434.4872155-CDS-P-littoralis_Contig690:63575..63682Pylaiella littoralis U1_48CDSP-littoralis_Contig690 63576..63682 -
1680791434.500614-CDS-P-littoralis_Contig690:64020..641171680791434.500614-CDS-P-littoralis_Contig690:64020..64117Pylaiella littoralis U1_48CDSP-littoralis_Contig690 64021..64117 -
1680791434.5112355-CDS-P-littoralis_Contig690:64286..643681680791434.5112355-CDS-P-littoralis_Contig690:64286..64368Pylaiella littoralis U1_48CDSP-littoralis_Contig690 64287..64368 -
1680791434.5225084-CDS-P-littoralis_Contig690:64545..647301680791434.5225084-CDS-P-littoralis_Contig690:64545..64730Pylaiella littoralis U1_48CDSP-littoralis_Contig690 64546..64730 -
1680791434.533736-CDS-P-littoralis_Contig690:67935..682291680791434.533736-CDS-P-littoralis_Contig690:67935..68229Pylaiella littoralis U1_48CDSP-littoralis_Contig690 67936..68229 -
1680791434.5515106-CDS-P-littoralis_Contig690:68357..685511680791434.5515106-CDS-P-littoralis_Contig690:68357..68551Pylaiella littoralis U1_48CDSP-littoralis_Contig690 68358..68551 -
1680791434.564111-CDS-P-littoralis_Contig690:68699..688081680791434.564111-CDS-P-littoralis_Contig690:68699..68808Pylaiella littoralis U1_48CDSP-littoralis_Contig690 68700..68808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig690.23.1

>prot_P-littoralis_Contig690.23.1 ID=prot_P-littoralis_Contig690.23.1|Name=mRNA_P-littoralis_Contig690.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=631bp
EEKSSSVCFNNCSGHGRCIDYTCECDVGYDGDDCSFCFFDGGESVHPILS
VGDVNLTSLNFRETLRDVENLLVVATSRSCHRCLHLEMEYHAARSDLKEA
GVLLGRVDADSERALFGDILEGFEAAAKHLPLIILWAASRKSRQFLLYDG
AHERNDIVEFVHKQLGLPVRKLTSVSAVEKFVENPRFQAMGTTSSTVVSV
VGFFSDAGEMEEDDMEDFMEAAADLNARSDIYFGVVNDAAICRHFKKLGW
IQRASEAVLTRPGLLRAPSLTIWALLEDNSSVQDWIVKESLPLVGRLSNA
NFAQYERTHLPMLIMFLELPGSHGASSAPGSRIGGMSGGVRNDDLVTELM
EVALEHKGRVTCLYADGTAFADSMKTLGLFGGRERLPQVGFNTMDGRQLP
FPEDLPINRETLLHFTAAFLSGRLQSSLDAKKAMTVSRPFSALNTVTRKN
KRGAPVEVRGVSEQLKPKDAIMQAGQLLKICYTQENFSRMVLDNDKDVLL
MFHAEASDPLCSNMIPYYKRVGERFLDLDVSSVLVAAMDVTLETPPPEVA
ITLPTLPAIVLLAGDNKEAPFRFFSGVGKVGPLMRWLQEHASTSFELPVL
PHLTEADKPLFRKQVRERQELQTARTITQS*
back to top

mRNA from alignment at P-littoralis_Contig690:61592..68808-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig690.23.1 ID=mRNA_P-littoralis_Contig690.23.1|Name=mRNA_P-littoralis_Contig690.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7217bp|location=Sequence derived from alignment at P-littoralis_Contig690:61592..68808- (Pylaiella littoralis U1_48)
GAGGAGAAATCAAGCAGCGTGTGCTTCAACAACTGTTCAGGGCACGGGCG GTGTATCGACTACACCTGCGAGTGCGATGTTGGCTACGATGGCGACGACT GCAGTTTCTGTGAGTTGCATACACTAGCACAACAGACATGACGGTTCCGT GATATACCTTGCCCTGTACATGGGTGTGCTCTCCCGTTGCTATTTTTATT GCACATTGGAACGAAGACTACCGCGCCACACCAACTTGACCATATTCTCG TTTGCAGGCTTCTTTGACGGCGGAGAGAGCGTTCACCCAATTCTAAGTGT TGGCGATGTGAACCTGACGTCTTTGAACTTCCGCGAAACCCTTCGCGACG TGGAAAATCTTCTCGTGGTTGCGACGTCAAGATCGTGCCATCGCTGCCTC CATCTCGAGATGGAGTACCACGCCGCTAGATCCGACTTGAAGGAAGCAGG GGTGAGTGAAGGCCCGTCATATTACAGCCGAAAGAAGTCGCAGCAGAGAA GTGGTGCTGGGCAGGTAGTTTCACTTTCGTATCTCAGGCTCAGAATTGCG GTCGTCGCGTGGAATCAACCACACGACAGGTGCTTCTTGGGCGAGTTGAT GCTGACTCCGAACGGGCCCTTTTTGGTGATATCCTCGAAGGATTTGAAGC AGCTGCCAAGCATCTTCCTCTTATAATTTTATGGGCGGCGAGCCGCAAGT CTAGGCAGTTCTTACTGTACGATGGAGCGCACGAACGGAATGACATCGTT GAATTCGTGCACAAGCAGTTGGGGCTTCCTGTGAGAAAGCTGACAAGTGT ATCTGCCGTGGAAAAGTTTGTGGAAAATCCCCGCTTTCAGGCCATGGGTA CAACTTCCTCGACCGTGGTTTCGGTGAGTCACTTCTACTATGACATAGAG GTATGATGCAAATCGACATGAAGTTACCGTGTTTCCACTGATTTGTCTAG TTTGTCTCCAATCTGTTAAAACCTGTTCCAGAACACAGGCAGATATATAG TTCAGTATTGGGTGCAATATTCATCAACTGGGCAGGGGTTTGTCGTTGGG CGACTGCGGGACTACCACAAAGAAATGTTCAGTAAAGTAAAATCAAATTG AAAAACAAATACTGCTGTCAAATAAAAGCTGAATATAAGGGGGATTCCCC CATGTAACTGTTTTTGCAATTAAGAGGTTGTCCCCCGTTTTTGCAAGTAA ATTAAGGGGTGTTATAATCAGCGCACATCCTTCGAAATAGTTTCGAAATT TCGAAATTTCGGAGCGATTCGGTGAATATCAATAGCCCAAACCCATTTTG AAAAGCTCAAGAATTTCGCATTTGAATCCTTCGGAATGGTTTCGAAGGAT TCAAAGCGAAATTTCGGAATTTCGAAATAGAGCGAACCACAGGTCCCATT CCGAAATTTTGAAGGTCCGAAATTTCGAAATTGAGCGCTCTGATTATAAC CCCTACAAGGGAAAAATAAATGGATAATTGTAGTTTTCTCATAAATCAAA TTTATGAGCTTAGGAAAAATATTTCAATTGGTAGAACTTCGGTCTCCAAT ACCAAGGGTTGGGGGTTCAATCCGCCGCGCCCACAGTTTGATTATCTATA CTTGAAAAAAATCGCCAGAAGCTTGAAATTGTTTTCAAGAAAGGTATTTT TGTATTTTTCAAGTTATGATGATGCGTTCGTGCCGATTGGTCGTTCGGAG ACTCTGTGTCTACTGCTGTGTGAACATCGAATGTCTAGTAGGGTCCGGGT AGTTTCCATATAGTACATCACGCAATAACCGGGTTACTACTGCTGTTGTA CCCAATACACACACAGAGAGCAAAACCAGCACTCCGCTTTTTTTATAACA CCACAGCTAAAGCAGCAGCAGTAGTGTCAAACCATCTGTATCTATCAGCC CCTCTATGCGACGACGTGCTCGCCTCAAAAATCGAAGAACAAGACTATAT GCAAGGTCGGATGCTGCTGCTGTTACTGCTGTGCTGCTGCTGCTGCTGCC GCTGCTTGTGCTGCAAGGGTGTGATGTGATGTCTGTGCAACATCATCATC AGACACCACCACTCTAGCAGCAGCAGCAGAACAGAAGAAGGAGCCACACA GCAGCAGCAGCAGCAGCACAGCTCAGCAGCAGCAGCTTTTTGTGACAGCA CACGCACATTCTCTCGGGACGGTTCGTCGCCTTTCTATGATCAGCAGCAC TACTAGTCGTCATCCCGACTGTTGTTGTAGTTCGATGTGCGGCTTGGGAC AATGAGGAGGGTTGGTTGTGCTTTGTTTGACTCGGGATGCCCGGAGAGAT GTCTGCTTGGAGCTTGGAAAGGTAGTGAGAAACAGTTCCGATGTGTACTT CGTTTTTTTTTTCTCTCGGAGCGCACGTTGTGGCTGGTATGGGCACTTGA AATCGAGTTGCTGCCTCCCCGCCTATTGTTATGTATGTGTGCAACTGCTG CGCTCGCGGTGATGGCGTGATGGAAAAAAATATATATATGGGCAACGGCC CGGTTGGGCGGGCTATTACCAACCGGCACGTAGCGGCATATTTCTCAACT TGAAATCCGCTACTTGAAATCCGCACCTTGAAATTCTCGTACTTGAAAAA AATAACTTACAATTCGGGGCGAAAACCCGGAAAATAAAAAAAGAAACGGC AACGGATTCGAAGAACAAGCGAACAGCTGGGAAACCCTTCTTCGACAAAA TCGGGATTTATAATAATTTGTCCCCGAACCCCATTATTGTAAACTACGGG ATTAACCCCCCCTTGGAGTTTCTCCCCCCCCCCATCACCTTTTCAGCCTG CCACCATGTATTCTTTGATTTCCCCCCGGGGTAGATCGTTTTCGCCAAAA AAAAAAAGCTCCCCCGGGGTACGTCAATCTCCCCCCGGGGTACAATTTTT TTCACGAGTTCCCCCCGGGGGGGATGTATTTGCGCTTGTGCTTGAGTCGT TTTTTTTAATGGCGAAGGACAAAAGCATAACAGGGGTATAGAAAATTAAT CGTCACCTCTGTGCTTCGAGCGAGATATGTGTTGTACCGCGGCCAATTGG CATTCCAGGTTGTTTCTAGGGTACCTACGCGCTTGGTTTTTTATTGCTCT CTTCTTTCTCTTCACATTCTGTGCTCTTGTTCTTTTCCGGGCCCTTCTGC CGCTTGTATGCTTGCTCGTAAACCTTATCCATCACGGTCGGCAACTGCTG TGTGCGTGTGTGTGTGTGGACCACCACTCTTTGCACAACCCCCCCGGGTA GACACCCCCCGGGGTAGCATGGGAAAAAAGAAAACAAACAACCCCCCCCG GTACGTCAATTTCCCCCCGGGGGGTTGATTTCAACAACAAAAAGATCCCT CCTCCGGGGGGAAAACTCCGTAGTTTACGGTAGTCTAATGTCCTAAAAAA GCAAAGCAAAAAACAGAATGTTTCAACCCGCAGCAACTTCGTGGGGTAGC TTCGTCATGGCCGACGTTATATGCCGCCATATCGGGCTTTCGAGGGAAAA CTGGCTGCGCCATGGTACGGTGATGGGTGTGTGTGCGATGCGTATACCGC CCAAGAGACGAATCCTGCACGTGAACACTCGAACGCTCCTTTTTGTGCCC CATTTGAAACTTTAGAGTGACAATCCACTTGATAAAACCGAATATAAAAT GTTCCTGAAATTTTTGAGGACATAAGATAAGGTTCAAAGCATCGCGCTTG ATTGGAGGGACTGTCGAGCTCTGGACAACCGCGGACCTTATCGTATTTTC ATACGAAGTTTTGTTTTCGTAAACAAATTTCTGTTTTTTTTGCGTGGCAA AAGGTGCAAGAATGATACATTTCACGTTGCAATTGAGTCCACTTCGTGGC CGTACTTGTTGGGCCTTTCTACGAGCCGATGCTTGCTGATATTGTTTCAT GAACTGGAGGCGTGTCCGAGTTCACGCGCACGAGCCTCATATATGTTGAA GGGCCACATCAACGGCGAAGAACTGCGTATGCCAAATGTGGAGACAAACA ACCGCGCGGGGATAATTTGCTCCTTGACCTGATCCCAAGATACTTAAAAT GCTTTGCTTTACGGTGTACCTGCCGAAGGTTGTGGGATTCTTCTCAGATG CCGGTGAAATGGAGGAAGACGATATGGAGGACTTCATGGAAGCTGCAGCT GATTTAAATGCAAGGTCTGATATTTACTTTGGTGTGGTGAATGACGCAGC AATTTGCAGGCACTTCAAAAAGCTTGGATGGATACAGAGGGCATCCGAGG CGGTATTGACTAGGTGAGATTTGATTGAAATGGTAGCCCAATCTAGCTTT TTCTTGAGTGGCAGACACACCGCCCATCATACGGCATTGAACCAAAAAGC AGGGCGTCACGGTATAAGCGCACGTACAGCAATGCTCCAAACAGGTTTAT GGTAGAATTGAAGGTTTGATAAGTTTGCTTGACTTTTCAGGCCAGGCCTG CTGCGGGCGCCGAGTCTGACCATATGGGCTCTGTTGGAGGACAACTCATC TGTTCAAGATTGGATAGTCAAGGTGAGACCAAAAACGAGGTGGGGGAAAC ATTTGTCTGCATCTCACACATGCTACGTATGTGGTACCCATAGAGACAGC AATTGAAATTAAAGCGTATCGAAGTCAACGTGCCACCCAAAAATCTCAAT GCAAATCGTTGCAATGGACGTCTCTTCCGGAGTACTTGCAGGAGAGTCTA CCTTTGGTCGGGCGTTTGTCGAATGCCAACTTCGCGCAGTACGAGCGGAC GCATTTGCCAATGCTGATCATGTTCCTCGAACTTCCTGGTGAGTGAGCGA CACGGTCTGGTGTATTTCGACATATTCGGTGCAACCACAGCGCATAGCTG GCGCACAGATCTTCGATATCATACCTCCCGAAGTCATAAAATTGAATACC GAAACTTTTGTTGATGCGTGCGAGGGTATTTCAAGTTGTCTTCGTAGGTT GGGCTCATCGCCCCCGCCCCCCCGGGTATCGCCTCGACACTTTCGCGGTA CTTGGCAAGACCGAGATGACAGCACGCAGTCAGGCAAGCGCATGTCCTGC CATGCTTTGCGGCTTCTAGGCCATGCCGTTTGTTCACCCTCCACTCTTCA TCTACTGGCTCTTTGAGTCACGACAGGCTCACACGGTGCTAGTTCAGCTC CCGGCTCGAGAATCGGTGGCATGTCCGGCGGGGTACGGAACGATGACCTT GTTACAGAGCTCATGGAAGTGGCACTAGAGCACGTGAGAGAAAAAGTGTT CCGACGACGTAGACGGTATGTCAAAAGAGCTTTTGCTATTGAACCACATC TAACCGCCTCTGGAGCACTCGCCTTGACGACGCGATGCATTCGACAAAGC AAGTGCTGTCTTGATATTTGATACATCTTCGACATTTTAAACCTATCTGC AGAAAGGTCGTGTAACCTGCCTCTACGCCGACGGAACAGCTTTCGCTGAC AGTATGAAGACCTTGGGACTTTTCGGTGGGTGCGGCGGGGGCGTAGCAAG TACTTATGTTCTGCCTGACTTTGCTTCGTGCTCCTCTCTCGCCATGTCGC GTTTGTCAACTAAAACAAGAAATCCCACAATTATTTTGTCTTACATGTGT CACAGGTAGTCGTGAGCGCCTTCCTCAAGTAGGATTCAACACCATGGATG GGAGGCAGCTACCCTTCCCCGAGGATCTACCCATCAATCGCGAGACGTTA CTCCACTTTACTGCCGCATTCTTGAGCGGTCGGCTGCAATCATCTTTGGA TGCTAAAAAGGCCATGACCGTTTCTCGCCCCTTTAGCGCCCTCAATACCG TAACACGGAAAAACAAGCGGGGTGCACCGGTTGAGGTCCGAGGGGTTTCA GAGCAACTGAAGCCAAAGGATGCGATAATGCAGGCAGGCCAATTATTGAA AATATGCTATACGCAGTTTAGGTAGTATTCGATAGTTAGGCGCGGAACGT TTACGGACAATGAAGACTTGACCAGGTCCAACCGTTTGCTGATCGCCTAG ATCACGGAAAGCTCTAACTTTTATTTGTGCGCTGTTTGATGTTTCTTTCG ATGCTGAATCGTAGCCTTCTTGACATTATAAACTATTTTGGCCAGGTGAC CAGGGAAAACTTTTCTCGGATGGTACTAGACAACGACAAGGATGTGCTGC TCATGTTTCATGCAGAGGCGAGTGACCCTTTGTTCTGCGCTCCCAATACT AGGGTTGCAACAGCACGTCGTGACAAACTGAGTATCGGTCAAAGTATATC CTGGTAATTTATGAAAGTATGCAAATCCCCCCCGTGTGTGCTGCAGAATT ATGTCTCGCGTGAACAGGAAGTCGCCAACGCTTCCACTACTTGCCTAAAT ACCGTCAACCCCATTATTTATACTTTCCAGGAATGCGAAAGGTGCAGCAA CATGATTCCATATTACAAGGTGAGAGATTGCATATTTTTTGTATTTCGTG TAAATCGTCGACGTTTGCTGTCAAAGGCAAAAGTTCGCGTTCCAAACACA GAGCACACCCCGTCAACAGAAACAAATAGATGACCGCACGGAAGGTGACG AGTTTTTTGGGTAAGCATGAAACTATGAAAAAACCATGAGTTGTGGTGTT AAACGTACCAGGTATCGTTTCTCAGCAAGGGGTATTGTCCGAGCACCACA TGCATTTGTTCCTGTTCCAGCGTGTAGGTGAACGGTTTTTGGACCTTGAC GTATCGTCGGTTCTTGTGGCCGCGATGGATGTGACCTTGGAGACACCCCC CCCGGAAGTGGCGATTACGTTGCCAACCCTCCCTGCTATCGTACTGCTTG CGGGCGACAACAAAGAGGCGCCATTTAGGTGCGAGGGACTCCACTGCGTT CACCCTGGCTAATCGCGTGTTGCATATAAGCAAGCTCTGTTCTCGCGATG CCCCTTGTCTATGGTTGCGTTGTGGAGTTCACACCGCAAAATATTGTATG TAGGTGGGTAATGTGACCACAGCAGTAGTGTACCGACGCACGTCGTCAGA TAGCCTCTCGTCCCCTCTTCGTGCTTTCAACGAACGCAGATTTTTCTCCG GTGTTGGCAAGGTAGGGCCGTTGATGAGGTGGCTCCAAGAGCACGCGTCA ACTTCGTTCGAACTACCTGTACTCCCACACCTAACCGAGGCAGACAAACC GCTCTTCCGCAAGCAAGTGAGGGAGCGTCAAGAGCTACAGACTGCAAGGA CTATCACCCAGTCATGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig690:61592..68808-

>mRNA_P-littoralis_Contig690.23.1 ID=mRNA_P-littoralis_Contig690.23.1|Name=mRNA_P-littoralis_Contig690.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1893bp|location=Sequence derived from alignment at P-littoralis_Contig690:61592..68808- (Pylaiella littoralis U1_48)
GAGGAGAAATCAAGCAGCGTGTGCTTCAACAACTGTTCAGGGCACGGGCG
GTGTATCGACTACACCTGCGAGTGCGATGTTGGCTACGATGGCGACGACT
GCAGTTTCTGCTTCTTTGACGGCGGAGAGAGCGTTCACCCAATTCTAAGT
GTTGGCGATGTGAACCTGACGTCTTTGAACTTCCGCGAAACCCTTCGCGA
CGTGGAAAATCTTCTCGTGGTTGCGACGTCAAGATCGTGCCATCGCTGCC
TCCATCTCGAGATGGAGTACCACGCCGCTAGATCCGACTTGAAGGAAGCA
GGGGTGCTTCTTGGGCGAGTTGATGCTGACTCCGAACGGGCCCTTTTTGG
TGATATCCTCGAAGGATTTGAAGCAGCTGCCAAGCATCTTCCTCTTATAA
TTTTATGGGCGGCGAGCCGCAAGTCTAGGCAGTTCTTACTGTACGATGGA
GCGCACGAACGGAATGACATCGTTGAATTCGTGCACAAGCAGTTGGGGCT
TCCTGTGAGAAAGCTGACAAGTGTATCTGCCGTGGAAAAGTTTGTGGAAA
ATCCCCGCTTTCAGGCCATGGGTACAACTTCCTCGACCGTGGTTTCGGTT
GTGGGATTCTTCTCAGATGCCGGTGAAATGGAGGAAGACGATATGGAGGA
CTTCATGGAAGCTGCAGCTGATTTAAATGCAAGGTCTGATATTTACTTTG
GTGTGGTGAATGACGCAGCAATTTGCAGGCACTTCAAAAAGCTTGGATGG
ATACAGAGGGCATCCGAGGCGGTATTGACTAGGCCAGGCCTGCTGCGGGC
GCCGAGTCTGACCATATGGGCTCTGTTGGAGGACAACTCATCTGTTCAAG
ATTGGATAGTCAAGGAGAGTCTACCTTTGGTCGGGCGTTTGTCGAATGCC
AACTTCGCGCAGTACGAGCGGACGCATTTGCCAATGCTGATCATGTTCCT
CGAACTTCCTGGCTCACACGGTGCTAGTTCAGCTCCCGGCTCGAGAATCG
GTGGCATGTCCGGCGGGGTACGGAACGATGACCTTGTTACAGAGCTCATG
GAAGTGGCACTAGAGCACAAAGGTCGTGTAACCTGCCTCTACGCCGACGG
AACAGCTTTCGCTGACAGTATGAAGACCTTGGGACTTTTCGGTGGTCGTG
AGCGCCTTCCTCAAGTAGGATTCAACACCATGGATGGGAGGCAGCTACCC
TTCCCCGAGGATCTACCCATCAATCGCGAGACGTTACTCCACTTTACTGC
CGCATTCTTGAGCGGTCGGCTGCAATCATCTTTGGATGCTAAAAAGGCCA
TGACCGTTTCTCGCCCCTTTAGCGCCCTCAATACCGTAACACGGAAAAAC
AAGCGGGGTGCACCGGTTGAGGTCCGAGGGGTTTCAGAGCAACTGAAGCC
AAAGGATGCGATAATGCAGGCAGGCCAATTATTGAAAATATGCTATACGC
AGGAAAACTTTTCTCGGATGGTACTAGACAACGACAAGGATGTGCTGCTC
ATGTTTCATGCAGAGGCGAGTGACCCTTTGTGCAGCAACATGATTCCATA
TTACAAGCGTGTAGGTGAACGGTTTTTGGACCTTGACGTATCGTCGGTTC
TTGTGGCCGCGATGGATGTGACCTTGGAGACACCCCCCCCGGAAGTGGCG
ATTACGTTGCCAACCCTCCCTGCTATCGTACTGCTTGCGGGCGACAACAA
AGAGGCGCCATTTAGATTTTTCTCCGGTGTTGGCAAGGTAGGGCCGTTGA
TGAGGTGGCTCCAAGAGCACGCGTCAACTTCGTTCGAACTACCTGTACTC
CCACACCTAACCGAGGCAGACAAACCGCTCTTCCGCAAGCAAGTGAGGGA
GCGTCAAGAGCTACAGACTGCAAGGACTATCACCCAGTCATGA
back to top