mRNA_P-littoralis_Contig690.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig690.6.1
Unique NamemRNA_P-littoralis_Contig690.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig690.6.1 vs. uniprot
Match: A0A6H5JJV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV3_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.760e-21
Identity = 45/69 (65.22%), Postives = 47/69 (68.12%), Query Frame = -2 
Query:    3 MPNIFPAPRLPTGCPSLHMSRLYFSTSSF*MLS*ELRPAFPDTRRRLNGAGGYSLGAGPFLFFADADGR 209
            MPN FPAPRLPTG P  H+ RL FSTSSF   S  LRP FPD RR +NGAGGYSL  GPFL      GR
Sbjct:    1 MPNTFPAPRLPTGFPLAHLLRLNFSTSSFCTFSYALRPLFPDARRSVNGAGGYSLEGGPFLLLESLAGR 69
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BLAST of mRNA_P-littoralis_Contig690.6.1 vs. uniprot
Match: A0A6H5JZW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 9.460e-16
Identity = 36/49 (73.47%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    4 RPSASAKKRKGPAPREYPPAPFNLRRVSGKAGRNSYESIQKLEVLKYSR 150
            RP++ +KKRKGP  REYPPAPF LRRVSGK+GR++YE++QKLEVLK+SR
Sbjct:   55 RPASDSKKRKGPPSREYPPAPFTLRRVSGKSGRSAYENVQKLEVLKFSR 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig690.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJV3_9PHAE3.760e-2165.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW1_9PHAE9.460e-1673.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig690contigP-littoralis_Contig690:12402..12821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size422
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.9809024-CDS-P-littoralis_Contig690:12401..128211680791433.9809024-CDS-P-littoralis_Contig690:12401..12821Pylaiella littoralis U1_48CDSP-littoralis_Contig690 12402..12821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig690.6.1prot_P-littoralis_Contig690.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig690 12402..12821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig690.6.1

>prot_P-littoralis_Contig690.6.1 ID=prot_P-littoralis_Contig690.6.1|Name=mRNA_P-littoralis_Contig690.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
PRPSASAKKRKGPAPREYPPAPFNLRRVSGKAGRNSYESIQKLEVLKYSR
LMCSDGQPVGRRGAGKMFGIDKKLVRDWEDQEKELVEFSKQENAGKQRSL
HPGREPDTREVEEAIVDEINALRKNGAAVTRDLVLAKLLS
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mRNA from alignment at P-littoralis_Contig690:12402..12821-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig690.6.1 ID=mRNA_P-littoralis_Contig690.6.1|Name=mRNA_P-littoralis_Contig690.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig690:12402..12821- (Pylaiella littoralis U1_48)
CCTCGTCCGTCCGCGTCAGCGAAGAAGAGGAAGGGTCCGGCTCCCAGAGA
GTACCCGCCGGCTCCGTTCAACCTGCGGCGAGTGTCTGGGAAGGCTGGGC
GCAACTCCTACGAGAGCATTCAGAAGCTCGAGGTGCTGAAATACAGCCGG
CTCATGTGCAGCGATGGGCAGCCAGTCGGAAGGCGTGGTGCGGGGAAGAT
GTTCGGCATCGACAAGAAGCTCGTGAGAGACTGGGAGGACCAGGAGAAGG
AGCTGGTCGAGTTTTCGAAGCAGGAGAACGCAGGCAAGCAGCGCTCGCTG
CACCCCGGACGCGAGCCTGACACAAGGGAGGTGGAGGAGGCCATAGTGGA
CGAGATCAACGCCCTCAGGAAGAACGGTGCTGCGGTGACCCGGGACCTCG
TCCTGGCCAAGCTTCTCTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig690:12402..12821-

>mRNA_P-littoralis_Contig690.6.1 ID=mRNA_P-littoralis_Contig690.6.1|Name=mRNA_P-littoralis_Contig690.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig690:12402..12821- (Pylaiella littoralis U1_48)
CCTCGTCCGTCCGCGTCAGCGAAGAAGAGGAAGGGTCCGGCTCCCAGAGA
GTACCCGCCGGCTCCGTTCAACCTGCGGCGAGTGTCTGGGAAGGCTGGGC
GCAACTCCTACGAGAGCATTCAGAAGCTCGAGGTGCTGAAATACAGCCGG
CTCATGTGCAGCGATGGGCAGCCAGTCGGAAGGCGTGGTGCGGGGAAGAT
GTTCGGCATCGACAAGAAGCTCGTGAGAGACTGGGAGGACCAGGAGAAGG
AGCTGGTCGAGTTTTCGAAGCAGGAGAACGCAGGCAAGCAGCGCTCGCTG
CACCCCGGACGCGAGCCTGACACAAGGGAGGTGGAGGAGGCCATAGTGGA
CGAGATCAACGCCCTCAGGAAGAACGGTGCTGCGGTGACCCGGGACCTCG
TCCTGGCCAAGCTTCTCTCC
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