mRNA_P-littoralis_Contig690.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig690.5.1
Unique NamemRNA_P-littoralis_Contig690.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig690.5.1 vs. uniprot
Match: A0A6H5KJN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.750e-13
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 3
Query:    3 EGWEGKAWAFIQKLRVILREHAQEAVILERAAQAAKVGGTVEIEMDVKATAEKLLAVQAKIFALLYNMDQTPIQAEMPSDTTLEKTGAKSACITTGAW--HPARGYV 317
            +G+EG AWA + KLR  L + A E  I  R    A     ++ E     T+E+L +V+A++F  L NMDQTP+Q EMP +TTLEKTGAK A I+TG +  H  +G+ 
Sbjct:  181 KGYEGMAWATVMKLREALVKRAGE--IYARRHPPAPDESPIKGE---DLTSEQLASVKAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGFAAHHLQGHA 282          
BLAST of mRNA_P-littoralis_Contig690.5.1 vs. uniprot
Match: A0A6H5KRF0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.380e-13
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 3
Query:    3 EGWEGKAWAFIQKLRVILREHAQEAVILERAAQAAKVGGTVEIEMDVKATAEKLLAVQAKIFALLYNMDQTPIQAEMPSDTTLEKTGAKSACITTG 290
            +G+EG AWA + KLR  L + A E  I  R    A     ++ E     T+E+L +V+A++F  L NMDQTP+Q EMP +TTLEKTGAK A I+TG
Sbjct:  269 KGYEGMAWATVMKLREALVKRAGE--IYARRHPPAPEESPIKGE---DLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTG 359          
BLAST of mRNA_P-littoralis_Contig690.5.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.270e-12
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 3
Query:    3 EGWEGKAWAFIQKLRVILREHAQEAVILERAAQAAKVGGTVEIEMDVKATAEKLLAVQAKIFALLYNMDQTPIQAEMPSDTTLEKTGAKSACITTG 290
            +G+EG AWA + KLR  L + A E  I  R    A     ++ E     T+E+L +V+A++F  L NMDQTP+Q EMP +TTLEKTGAK A I+TG
Sbjct:  240 KGYEGMAWATVMKLREALVKRAGE--IYARRHPPAPDESPIKGE---DLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTG 330          
BLAST of mRNA_P-littoralis_Contig690.5.1 vs. uniprot
Match: A0A6H5KKC9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.670e-12
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 3
Query:    3 EGWEGKAWAFIQKLRVILREHAQEAVILERAAQAAKVGGTVEIEMDVKA---TAEKLLAVQAKIFALLYNMDQTPIQAEMPSDTTLEKTGAKSACITTG 290
            +G+EG AWA + KLR  L + A E          A+    V  +  +K    T+E+L +V+A++F  L NMDQTP+Q EMP +TTLEKTGAK A I+TG
Sbjct:  121 QGYEGMAWATVMKLREALVKRAGEIY--------ARRHPPVPDKSPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTG 211          
BLAST of mRNA_P-littoralis_Contig690.5.1 vs. uniprot
Match: A0A6H5JCV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.290e-12
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 3
Query:    3 EGWEGKAWAFIQKLRVILREHAQEAVILERAAQAAKVGGTVEIEMDVKATAEKLLAVQAKIFALLYNMDQTPIQAEMPSDTTLEKTGAKSACITTG 290
            +G+EG AWA + KLR  L + A E +   R   A     T   ++    T+E+L +V+A++F  L NMDQTP+Q EMP +TTL+KTGAK A I+TG
Sbjct:  280 KGYEGMAWATVMKLREALVKRAGE-IYARRHPPAPDESPTKGEDL----TSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLDKTGAKDARISTG 370          
BLAST of mRNA_P-littoralis_Contig690.5.1 vs. uniprot
Match: A0A6H5KFQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.060e-12
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 3
Query:    3 EGWEGKAWAFIQKLRVILREHAQEAVILERAAQAAKVGGTVEIEMDVKA---TAEKLLAVQAKIFALLYNMDQTPIQAEMPSDTTLEKTGAKSACITTG 290
            +G+EG AWA +  LR        EA++    A  A+       E  +K    T E+L +V+A++F  L NMDQTP+Q EMP +TTLEKTGAK A I+TG
Sbjct:  244 KGYEGTAWATVMNLR--------EALVQRAGAIHARRNPPAPDESPIKGEDLTCEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTG 334          
BLAST of mRNA_P-littoralis_Contig690.5.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.940e-12
Identity = 46/96 (47.92%), Postives = 59/96 (61.46%), Query Frame = 3
Query:    3 EGWEGKAWAFIQKLRVILREHAQEAVILERAAQAAKVGGTVEIEMDVKATAEKLLAVQAKIFALLYNMDQTPIQAEMPSDTTLEKTGAKSACITTG 290
            +G+EG AWA + KLR  L   A E  I  R    A     ++ E     T E+L +V+A++F  L NMDQTP+Q EMP +TTLEKTGAK A I+TG
Sbjct:   58 KGYEGMAWATVMKLREALVRRAGE--IYARRHPPAPDESPIKGE---DLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTG 148          
BLAST of mRNA_P-littoralis_Contig690.5.1 vs. uniprot
Match: A0A6H5JAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU0_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.230e-12
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = 3
Query:    3 EGWEGKAWAFIQKLRVILREHAQEAVILERAAQAAKVGGTVEIEMDVKATAEKLLAVQAKIFALLYNMDQTPIQAEMPSDTTLEKTGAKSACITTGAWHPARGYVCSRISTKP 341
            +G+EG AWA + KLR  L + A E +   R   A     T   ++    T+E+L +V+A++F  L NMDQTP+Q EMP +TTL+KTGAK   I+TG          +R+S+ P
Sbjct:  226 KGYEGMAWATVMKLREALVKRAGE-IYARRHPPAPDESPTKGEDL----TSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLDKTGAKDTRISTGG---------TRVSSPP 324          
BLAST of mRNA_P-littoralis_Contig690.5.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 8.040e-12
Identity = 52/121 (42.98%), Postives = 65/121 (53.72%), Query Frame = 3
Query:    3 EGWEGKAWAFIQKLRVILREHAQEAVILERAAQAAKVGGTVEIEMDVKATAEKLLAVQAKIFALLYNMDQTPIQAEMPSDTTLEKTGAKSACITTGAWHPARGYVCSRISTKP*PGRRGTC 365
            +G EG AWA + KLR  L E A E +  +R   A    G   I  +   ++ +L  V  ++F  L NMDQTP+Q EMP +TTLEKTGAK A I TGA     G  C R   KP P    +C
Sbjct:  145 KGHEGMAWATLMKLRKALLERAGE-IYAQRYPPAP---GESPIRGE-DLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGA-----GVCCIRTILKPLPYPPTSC 255          
BLAST of mRNA_P-littoralis_Contig690.5.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.680e-11
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 3
Query:    3 EGWEGKAWAFIQKLRVILREHAQEAVILERAAQAAKVGGTVEIEMDVKATAEKLLAVQAKIFALLYNMDQTPIQAEMPSDTTLEKTGAKSACITTG 290
            +G EG AWA + KLR  L + A E  I  R    A     ++ E     T+E+L +V+A++F  L NMDQTP+Q E+P +TTLEKTGAK A I+TG
Sbjct:   58 KGDEGMAWATVMKLREALVKRAGE--IYARRHPPAPDESPIKGE---DLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTG 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig690.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN9_9PHAE4.750e-1344.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRF0_9PHAE9.380e-1347.92DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE1.270e-1247.92DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KKC9_9PHAE1.670e-1245.45DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JCV1_9PHAE2.290e-1245.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ9_9PHAE3.060e-1244.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK2_9PHAE3.940e-1247.92DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JAU0_9PHAE4.230e-1240.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE45_9PHAE8.040e-1242.98DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE2.680e-1146.88DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig690contigP-littoralis_Contig690:10161..12250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size373
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.41e-11
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size210
COG categoryCH
BRITEko00000,ko03000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.9039304-UTR-P-littoralis_Contig690:10160..101891680791433.9039304-UTR-P-littoralis_Contig690:10160..10189Pylaiella littoralis U1_48UTRP-littoralis_Contig690 10161..10189 -
1680791433.9450366-UTR-P-littoralis_Contig690:12116..122501680791433.9450366-UTR-P-littoralis_Contig690:12116..12250Pylaiella littoralis U1_48UTRP-littoralis_Contig690 12117..12250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.9193852-CDS-P-littoralis_Contig690:10189..102421680791433.9193852-CDS-P-littoralis_Contig690:10189..10242Pylaiella littoralis U1_48CDSP-littoralis_Contig690 10190..10242 -
1680791433.9345908-CDS-P-littoralis_Contig690:11959..121161680791433.9345908-CDS-P-littoralis_Contig690:11959..12116Pylaiella littoralis U1_48CDSP-littoralis_Contig690 11960..12116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig690.5.1prot_P-littoralis_Contig690.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig690 10190..12116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig690.5.1

>prot_P-littoralis_Contig690.5.1 ID=prot_P-littoralis_Contig690.5.1|Name=mRNA_P-littoralis_Contig690.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
MDVKATAEKLLAVQAKIFALLYNMDQTPIQAEMPSDTTLEKTGAKSACIT
TGAWHPARGYVCSRISTKP*
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mRNA from alignment at P-littoralis_Contig690:10161..12250-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig690.5.1 ID=mRNA_P-littoralis_Contig690.5.1|Name=mRNA_P-littoralis_Contig690.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2090bp|location=Sequence derived from alignment at P-littoralis_Contig690:10161..12250- (Pylaiella littoralis U1_48)
CGGAAGGATGGGAGGGCAAGGCGTGGGCATTCATCCAGAAGCTCCGGGTA ATCCTGCGTGAGCACGCGCAGGAAGCCGTCATCTTGGAGAGGGCAGCCCA GGCAGCGAAGGTGGGAGGGACCGTGGAGATCGAGATGGACGTCAAGGCGA CTGCGGAGAAACTTTTGGCTGTTCAGGCCAAGATCTTCGCCCTGCTCTAC AACATGGACCAGACCCCGATCCAGGCCGAGATGCCGTCGGACACCACGCT GGAGAAGACTGGTGCGAAGAGCGCTTGCATCACGACTGGAGGTGAGGCGG TATAATGGTAGTTTCAATGTTTAAATTCAGTTCAACCCAACACCACGGTG CGGAGATTTTTTTATTTTTCTATTTTTTGCCCACGCAAAAAGCGGGAAAT TACAAATTTGCCGACAGTGGAAATACGGGTTAATGGAATATTTTTGAATA TTTTGCATTGCTTCTGCCGTCACATGCACACACTGCCGTGCGTTCTTCTT TTGCCTGTACTGCTGTGTTCGCCTGGTTCACGTTTGTTTTTTTTCCAGCG TTTAAATTATTGTTTTTGTGTTCGTTGTGTGCAGGCACCTGATTACTGTT ACGGAGTATTGAGTATACCCCTAGGTAAGGGTATTATCTAGATATAGGGT ACCTCTAGTATGTATTCCAAGCCATCGGGCCCCCTGGCCCGATGACGCCC GTGCCCTCAGTGTGTCCTCTCGGCTGAGAGACTAATAAGAGATATCATCC CCAAGAGCTGGAAGCTACCCATTGTGAGTGTCCAAGTGGCAAAGAACCCC CTAGGAGCAAGAGCTCCTTAAGATCTGGCGTCGACGTATAGGCTTGTGGT CTCATTTCAAAGAATCTCGCGACGTAGCGCTGCGCTGCGGTGTTCTCGAA TTTGAGTTCCACCAAGACCACATATTGGATCACTGCTCTATACCCAGTAT ACTTGTAGCTCTTCTTTTTTTTCTCCCGTCCATTTTTTTTGGACCAGCCA CCCAGACACACTCGACTCGTGACACCTGGTCACTCGTACTTGTGGCGCCC TTGTTGTCGCCAGAGCATCTTTGCTCTGACGCCTCTTCGGACGCTGCATC GTGCCGCCCTTGCGGACGCCGCGCCCGTACCTGTGATCGGGTCGCCGCTA CTTTTATCTCCTTCTGAAGACCAACCTCTGCTCATCCGACTGCTGTAAAC TCTCAGCCAGTGGCGCGACGCGCATTTTGGGCACTCTAAACCCCATATTA AAAAAAAAAAATCACCAGAAAATTTTACTGCTGTAAAGGCGAGAATGCCG CACGATGTTTCTACTGCTGTAAAGGTACCCGTGACTCATCATACGTTGGA CTTGGTTTTAGAACCGGACGTGGATCGCTTCAACAAACTGCTTTTTCATC ACTTCCCAAGTGTGGCCAAGCTGGCACTTCCTGCTGTGGGCCAAGATGAT AGTACTTTGCCACTACCTGTACTGCGCACTGCTGGACCTCCTCTGGCGAT GTACCGGCGCCGCGCCATCGATCATCCGCTCATCGCACTAGACTTTATGC TCCCACACCATATTGCTGTGGACCTGTGTGTTGGAGTGTTGGGCGTCGAA AATTGCACACCACCTTTCAACTCTCTGCCACATATGAAATCTCTCCCGAG ATATGCACCACTTTTCGGACAACCCAATCCTGGCTCCGGTATTTCTCTCC GAGGCCTTCATGCTTGCGTTCCACGAAAAACCCGTTCGAACACTGCTGCT GTCGCCACTACACACCCGTCCACAAGCAATAATGCCTGCCTTCTTTCGGA TCGAAGCCTGGCTGCTGCTAATTGGGACAAATACGTGATGGCACCACGAG GGGCTTTTGAGTTTTATGTGTTTCCTGCCTCACTGTGGAACTGTAGTTCG CTGCTGGTTCAAGCTTTCACTCATGTGCTCACGCCGCTGCAGCCGATCGC CGAATTTTTTCCACCTTCCTTCTTGGCTTTTCCTGAACGCCGTTCCACGA TCGCACAGCCTGGCATCCTGCTCGAGGTTATGTCTGCTCCCGGATCAGCA CAAAGCCCTAGCCGGGACGACGTGGAACCTGCTGGTGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig690:10161..12250-

>mRNA_P-littoralis_Contig690.5.1 ID=mRNA_P-littoralis_Contig690.5.1|Name=mRNA_P-littoralis_Contig690.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig690:10161..12250- (Pylaiella littoralis U1_48)
ATGGACGTCAAGGCGACTGCGGAGAAACTTTTGGCTGTTCAGGCCAAGAT
CTTCGCCCTGCTCTACAACATGGACCAGACCCCGATCCAGGCCGAGATGC
CGTCGGACACCACGCTGGAGAAGACTGGTGCGAAGAGCGCTTGCATCACG
ACTGGAGCCTGGCATCCTGCTCGAGGTTATGTCTGCTCCCGGATCAGCAC
AAAGCCCTAG
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