mRNA_P-littoralis_Contig69.155.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.155.1
Unique NamemRNA_P-littoralis_Contig69.155.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig69.155.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.240e-24
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:   67 NMDILASLLQFVPDKRFLFFASVSRSWRKAWGKRGTLTAHVSPDSSVAQLQFSFEIGLPRCRQKLCASIAGFDKLELLQCAREHG 321
            N+D+L S+++FV +K+FLFFA VSR+WR+AWG R  +T+ V+ DSSV+QL++SFE GLPR R +LCA+IA    LELL+ AR  G
Sbjct:   60 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSG 144
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BLAST of mRNA_P-littoralis_Contig69.155.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 5.770e-22
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:   37 RMARESSAMTNMDILASLLQFVPDKRFLFFASVSRSWRKAWGKRGTLTAHVSPDSSVAQLQFSFEIGLPRCRQKLCASIAGFDKLELLQCAREHGFP 327
            R+  E+ AMTNMDI+  L QFV DK+FLFFA+VSRSWR AWG+R T+T+ V+P ++  QLQ+SF  GL R     C + A    L+LL+ A E G P
Sbjct:   12 RVRTENVAMTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARAGNLDLLRWATEQGCP 108
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BLAST of mRNA_P-littoralis_Contig69.155.1 vs. uniprot
Match: D7G822_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G822_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.930e-10
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:   88 LLQFVPDKRFLFFASVSRSWRKAWGKRGTLTAHVSPDSSVAQLQFSFEIGLPRCRQK--LCASIAGFDKLELLQCARE 315
            L +FV   ++LF A VS+++R+AWG R T+T  V  D+SV QL +  E+GLP   ++  +C + A F +L+LL+ A+E
Sbjct:    4 LAEFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQE 81
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BLAST of mRNA_P-littoralis_Contig69.155.1 vs. uniprot
Match: A0A6H5K3L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L5_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.950e-8
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:   94 QFVPDKRFLFFASVSRSWRKAWGKRGTLTAHVSPDSSVAQLQFSFEIGLPRCRQK--LCASIAGFDKLELLQCAR 312
            +FV   ++LF A V +++R+AWG R T+T  V  D+SV QL +  E+GLP   ++  +C + A F +L+LL+ A+
Sbjct:    6 EFVDQDQYLFIAPVLKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQ 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KPZ6_9PHAE8.240e-2457.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FH49_ECTSI5.770e-2252.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G822_ECTSI3.930e-1042.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3L5_9PHAE2.950e-840.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:662320..662649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size330
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-13_004320.1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.7570298-CDS-P-littoralis_Contig69:662319..6626311680791433.7570298-CDS-P-littoralis_Contig69:662319..662631Pylaiella littoralis U1_48CDSP-littoralis_Contig69 662320..662631 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.7712898-UTR-P-littoralis_Contig69:662631..6626491680791433.7712898-UTR-P-littoralis_Contig69:662631..662649Pylaiella littoralis U1_48UTRP-littoralis_Contig69 662632..662649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.155.1prot_P-littoralis_Contig69.155.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 662320..662631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.155.1

>prot_P-littoralis_Contig69.155.1 ID=prot_P-littoralis_Contig69.155.1|Name=mRNA_P-littoralis_Contig69.155.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MDNKRARMARESSAMTNMDILASLLQFVPDKRFLFFASVSRSWRKAWGKR
GTLTAHVSPDSSVAQLQFSFEIGLPRCRQKLCASIAGFDKLELLQCAREH
GFP*
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mRNA from alignment at P-littoralis_Contig69:662320..662649-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.155.1 ID=mRNA_P-littoralis_Contig69.155.1|Name=mRNA_P-littoralis_Contig69.155.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig69:662320..662649- (Pylaiella littoralis U1_48)
CACCAGCAGGCGGCCAGCATGGACAACAAACGTGCGAGAATGGCGAGGGA
GAGCTCCGCCATGACTAACATGGACATTCTGGCTAGCCTGTTGCAGTTTG
TGCCTGACAAGCGGTTCCTTTTCTTCGCCTCAGTGTCCAGGAGCTGGAGG
AAAGCGTGGGGGAAACGGGGGACGCTCACAGCCCATGTCTCGCCTGACTC
CTCCGTGGCCCAGTTACAGTTCAGCTTCGAGATCGGCCTGCCCCGGTGCC
GCCAAAAGCTGTGCGCCTCCATAGCGGGCTTCGACAAGCTCGAACTCTTG
CAGTGCGCCAGAGAGCACGGTTTTCCTTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:662320..662649-

>mRNA_P-littoralis_Contig69.155.1 ID=mRNA_P-littoralis_Contig69.155.1|Name=mRNA_P-littoralis_Contig69.155.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig69:662320..662649- (Pylaiella littoralis U1_48)
ATGGACAACAAACGTGCGAGAATGGCGAGGGAGAGCTCCGCCATGACTAA
CATGGACATTCTGGCTAGCCTGTTGCAGTTTGTGCCTGACAAGCGGTTCC
TTTTCTTCGCCTCAGTGTCCAGGAGCTGGAGGAAAGCGTGGGGGAAACGG
GGGACGCTCACAGCCCATGTCTCGCCTGACTCCTCCGTGGCCCAGTTACA
GTTCAGCTTCGAGATCGGCCTGCCCCGGTGCCGCCAAAAGCTGTGCGCCT
CCATAGCGGGCTTCGACAAGCTCGAACTCTTGCAGTGCGCCAGAGAGCAC
GGTTTTCCTTAG
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