mRNA_P-littoralis_Contig69.151.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.151.1
Unique NamemRNA_P-littoralis_Contig69.151.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig69.151.1 vs. uniprot
Match: D7FL81_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL81_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 6.860e-20
Identity = 50/98 (51.02%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:   16 MDCANTDGEICGGFDAISVYEIDSIPAPTPAPATLAPG-----------SGDGFVSIGCAADYKNARIMPDGPLADTTPMSAEICFGLCLDFDPSSTH 276
            MDCA    E CGGFDA+++YEI S   PTPAP T  PG           SGD +  +GC AD +++R+MP GPLA+   MSAEICFG+C   D S+TH
Sbjct:    1 MDCAGNTAETCGGFDALTLYEIASEAPPTPAPFTP-PGXXXXXXSPVVPSGD-YDFVGCVADSQSSRVMPVGPLAEDV-MSAEICFGICSAQDDSNTH 95
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BLAST of mRNA_P-littoralis_Contig69.151.1 vs. uniprot
Match: A0A6H5K566_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K566_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.170e-18
Identity = 51/103 (49.51%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:    1 SSACIMDCANTDGEICGGFDAISVYEIDSIPAPTPAPATLAPG-----------SGDGFVSIGCAADYKNARIMPDGPLADTTPMSAEICFGLCLDFDPSSTH 276
            S+AC   CA   GE CGGFDA+++YEI S   PTPAP T  PG           SGD +  + C AD +++R+MP GPLA+   MSAEICFG+C   D S TH
Sbjct:  415 STACTYPCAGNAGETCGGFDALTLYEIISEAPPTPAPLTP-PGPMPAPASPVVPSGD-YDFVDCVADSQSSRVMPVGPLAEAV-MSAEICFGICSAQDDSYTH 514
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BLAST of mRNA_P-littoralis_Contig69.151.1 vs. uniprot
Match: D7G5F7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F7_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.020e-13
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:    1 SSACIMDCANTDGEICGGFDAISVYEIDSIPAPTPAPATLAPG-----------SGDGFVSIGCAADYKNARIMPDGPLADTTPMSAEI 234
            S+AC MDCA    E CGGFDA+++YEI S   PTPAP T  PG           SGD +  +GC AD +++R+MP GPL +   MSAE+
Sbjct:  190 STACTMDCAGNTAETCGGFDALTLYEIVSEAPPTPAPFTP-PGXXXXXXSPVVPSGD-YDFVGCVADSQSSRVMPVGPLTEDV-MSAEV 275
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BLAST of mRNA_P-littoralis_Contig69.151.1 vs. uniprot
Match: A0A6H5K384_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K384_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.730e-6
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:    1 SSACIMDCANTDGEICGGFDAISVYEIDSIPAPTPAPATLAPG-----------SGDGFVSIGCAADYKNARIMPDGPL 204
            S+AC   CA   GE CGGFDA+++YEI S   PTPAP T  PG           SGD +  + C AD ++ R+   G +
Sbjct:  400 STACTYPCAGNAGETCGGFDALTLYEIISEAPPTPAPLTP-PGXXXXXXXPVVPSGD-YDFVDCVADSQSPRVRQRGEI 476
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BLAST of mRNA_P-littoralis_Contig69.151.1 vs. uniprot
Match: A0A8H8CQS6_PSICU (Uncharacterized protein n=1 Tax=Psilocybe cubensis TaxID=181762 RepID=A0A8H8CQS6_PSICU)

HSP 1 Score: 53.9 bits (128), Expect = 2.390e-6
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:    1 SSACIMDCANTDGEICGGFDAISVYEIDSIPAPTPAPATLAPGSGDGFVSIGCAADYKNARIMPDGPLADTTPMSAEICFGLC 249
            +SAC M C    GEICGG +AI++++  S PAP P P+        G+ ++GC +D  ++R +      D T M+ E C   C
Sbjct:  107 ASACSMPCTGNSGEICGGSNAINIFQ--STPAP-PLPS--------GWEAVGCFSDSTDSRTLRVASFTDVTGMTIESCLEFC 178
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BLAST of mRNA_P-littoralis_Contig69.151.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.720e-6
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1 
Query:    1 SSACIMDCANTDGEICGGFDAISVYEI--DSIPAPTPAPATLAPGSGDGFVSIGCAADYKNARIMPDGPLADTTPMSAEICFGLCL 252
            S+ C   C+    + CGGFDA +VY    DS P+        AP     FV++GC  D + ARIM D  L+D++ M+ E+C   CL
Sbjct:   49 STDCTYACSGDADQTCGGFDAANVYRYTDDSTPSXXXXXTEAAP-----FVALGCYGDDREARIMDDLVLSDSS-MTTELCELTCL 128
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BLAST of mRNA_P-littoralis_Contig69.151.1 vs. uniprot
Match: D7FMV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV1_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.580e-5
Identity = 30/86 (34.88%), Postives = 45/86 (52.33%), Query Frame = 1 
Query:   22 CANTDGEICGGFDAISVYEIDSIPAPTPAPATLAPGSGDG-FVSIGCAADYKNARIMPDGPLADTTPMSAEICFGLCLDFDPSSTH 276
            C+     +CG    +SVY ++           ++  S DG +  IGC  D + AR+M  GP+ +   MSAEICF +C +  P+STH
Sbjct:  326 CSGESTVLCGTDTHMSVYSLNE-------GREVSETSDDGDYELIGCRVDDREARVMSAGPI-EGDAMSAEICFDICRELHPTSTH 403
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BLAST of mRNA_P-littoralis_Contig69.151.1 vs. uniprot
Match: A0A6H5KQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ76_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 2.920e-5
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 1 
Query:   22 CANTDGEICGGFDAISVYEIDSIPAPTPAPATLAPGSGDGFVSIGCAADYKNARIMPDGPLADTTPMSAEICFGLCLDFDPSSTH 276
            C+     +CG    +SVY ++            A   GD +  IGC  D + AR+M  GP+ +   MSAEICF +C +  P+STH
Sbjct:  275 CSGESTVLCGTDTHMSVYSLNEDRG--------ANNDGD-YELIGCRVDDREARVMSVGPI-EGDAMSAEICFDICRELHPTSTH 349
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BLAST of mRNA_P-littoralis_Contig69.151.1 vs. uniprot
Match: A0A1V8SWM3_9PEZI (Uncharacterized protein n=3 Tax=Rachicladosporium TaxID=470018 RepID=A0A1V8SWM3_9PEZI)

HSP 1 Score: 50.1 bits (118), Expect = 5.540e-5
Identity = 31/85 (36.47%), Postives = 43/85 (50.59%), Query Frame = 1 
Query:    4 SACIMDCANTDGEICGGFDAISVYEIDSIPAPTPAPATLAPGSGDGFVSIGCAADYKN--ARIMPDGPLADTTPMSAEICFGLCL 252
            SAC + CA ++ E+CGG +A+SVY +     P P P      S   + S GC  D  N   R +  GP  D+  M+ E+C   CL
Sbjct:  580 SACSIRCAGSNPELCGGANALSVYNVTDFVVPAPKP------SVGKYRSQGCLTDPPNNVGRSLI-GPSIDSPNMTNELCIKYCL 657
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FL81_ECTSI6.860e-2051.02WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K566_9PHAE2.170e-1849.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5F7_ECTSI2.020e-1348.31WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K384_9PHAE1.730e-641.77WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8H8CQS6_PSICU2.390e-636.14Uncharacterized protein n=1 Tax=Psilocybe cubensis... [more]
D8LEL0_ECTSI2.720e-638.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMV1_ECTSI1.580e-534.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ76_9PHAE2.920e-535.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V8SWM3_9PEZI5.540e-536.47Uncharacterized protein n=3 Tax=Rachicladosporium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:647710..649569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQX7
PFAMsAMOP,Fn3-like,Glyco_hydro_3,Glyco_hydro_3_C,Polysacc_lyase,SRCR,VWD,WSC
Model size278
Max annot lvl2759|Eukaryota
KEGG rclassRC00467
KEGG koko:K15920,ko:K22017
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.56e-07
EggNOG OGsKOG4157@1|root,KOG4291@1|root,KOG4157@2759|Eukaryota,KOG4291@2759|Eukaryota
EC3.2.1.37
DescriptionSushi, nidogen and EGF-like
Cds size261
COG categoryKLT
CAZyGH3
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.658315-UTR-P-littoralis_Contig69:647709..6477241680791433.658315-UTR-P-littoralis_Contig69:647709..647724Pylaiella littoralis U1_48UTRP-littoralis_Contig69 647710..647724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.67332-CDS-P-littoralis_Contig69:647724..6477581680791433.67332-CDS-P-littoralis_Contig69:647724..647758Pylaiella littoralis U1_48CDSP-littoralis_Contig69 647725..647758 +
1680791433.6861646-CDS-P-littoralis_Contig69:648097..6482311680791433.6861646-CDS-P-littoralis_Contig69:648097..648231Pylaiella littoralis U1_48CDSP-littoralis_Contig69 648098..648231 +
1680791433.704366-CDS-P-littoralis_Contig69:648780..6488281680791433.704366-CDS-P-littoralis_Contig69:648780..648828Pylaiella littoralis U1_48CDSP-littoralis_Contig69 648781..648828 +
1680791433.7177167-CDS-P-littoralis_Contig69:649524..6495691680791433.7177167-CDS-P-littoralis_Contig69:649524..649569Pylaiella littoralis U1_48CDSP-littoralis_Contig69 649525..649569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.151.1prot_P-littoralis_Contig69.151.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 647725..649569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.151.1

>prot_P-littoralis_Contig69.151.1 ID=prot_P-littoralis_Contig69.151.1|Name=mRNA_P-littoralis_Contig69.151.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MDCANTDGEICGGFDAISVYEIDSIPAPTPAPATLAPGSGDGFVSIGCAA
DYKNARIMPDGPLADTTPMSAEICFGLCLDFDPSSTH
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mRNA from alignment at P-littoralis_Contig69:647710..649569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.151.1 ID=mRNA_P-littoralis_Contig69.151.1|Name=mRNA_P-littoralis_Contig69.151.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1860bp|location=Sequence derived from alignment at P-littoralis_Contig69:647710..649569+ (Pylaiella littoralis U1_48)
TCCTCGGCTTGCATCATGGACTGTGCGAACACCGACGGAGAAATCTGCGG
TAGGTTGTAGAATCTGTGTCGCGCCCTTTGACATTACTACTACGAAATTT
GATATCTATGCAGCTCATCTTGTTGATGCTTAAGCGTGATCACCAAAGCC
CCTATCCTTCATAATTATTTGATTTTCCACCTCAACCACAAGAGGGGTTG
TAGGTGCTGTCTCTGTTATCTCAGTACCTCCAATATTCGGTGCGTATTTG
ACCGATTACAGACGACCTTGGCCCGGACGATACAGACATACCCAGATATG
CTGCACTTGCATGTGCTATCGACAATCCGATGGTGCTTGATGTTGTTGGT
ATTAATGATGTTGTTGTTGGTGATGTTGTTGGCGACAGGTGGGTTTGACG
CCATCTCGGTGTACGAGATCGACTCCATACCGGCACCCACGCCGGCACCC
GCTACGCTTGCGCCTGGCAGTGGGGACGGCTTCGTCTCGATTGGCTGCGC
CGCGGATTACAAAAATGCTAGGGTGAGAAGAGGCCCCACCCCGCCATATG
ATGAAGAAGGATGGCCTTGGCGTAAATAGCCATACCGCGACACTGGTAGT
GTTTTTTAGATATGGTATCCACACCCGTCAATGTCTACACAGGAAAGGGG
GCTATACGACTCTCAAGTCGTACCAAGTACATTACATGTGTGGCGGAACG
AACAATATGTTTCAGAGTGCGTGCAGGTGTAAACGACTTGATACAAATAT
CGGGCACAATTTATGTGTGATCGTCATGCTGGAAGAATTTTGTTTCATGT
ATGTCTGGGCTCAACATTGCTTGGGCTTGCAGCACGCTCGTCGAGCGGAG
TCGGCCGCTCTTATCTCCGGTTTCAAACGCATGCATACTCGTGACAAATT
ATCATCTCTGTGTTTCCTTCTGTTCCGCAGTGCTACTCTTCTTGCTTCTG
TAGTGCTCTGTGCTCTAACCCGGCAGCCCGATAAATTCTGACATCCGCTT
GTGACGGTTTTACCTTATGATCTTCTGTCGACTTCTCCTCGCATTACTTT
GCGTTTGGTGTATGATCTCAGATTATGCCTGACGGGCCCCTAGCGGATAC
TACCCCCATGTCGGCAGAGGTGGGTTGGGTTCAGCGAAAGGGAGGAATTT
ACCAAGAAGCACCCGATCTGGCTGTCATCAGTGGTGGTGGACCTCTTGTT
GCGACATGCTTACGGTAGTTTGCTCAACTTGTTGTCGCCAGGAACGGTTG
GAGTTGCGGTAGTTCTTGTGTGATCAGTTGTACGTGTCGGTCTCGGAGCG
CATTCTCTCGTATGCCTTGTGTTCAACCATCCGCTCTCGTGTTACGCAGA
GCCGTGCAGAGGACATGTGTGTCTGGAACACGATCATCATGCGTGATATA
GCGACTTCTTTTACAATTTTGTGTTGCCGTGCGTTCTCCTTTGTGGGAAG
AGAGGAGGAAGCAGTCCGATGACAAATAAAACAACACCTTCACATGCAGT
TGAAAATAGCGCAGAGGTATTCGTCCTCTGTTGGCATTATCAGCGCCGGT
AAACTCTGCAGTTCCACCCGTGCTTTGCAACAAGGCACATACCCACAATG
TCAGGCTCCAGGCAAGAGGACACAAATGACCGTGTGCTACAAATGTGTCG
AAGAACCACTGTATCGCATAGTTTGTGACTTGCGCATATCTCCGTTTGGT
TGCTAGTCATCATCTCCTTCGATTTGTAGATGTTTCGATTTTCTCATGGT
CTGTTCTGTTCTGGTTCCGTGTCGTGGGACGATTGTCCAATCCCCTCCCT
TGTACCACTGCGCAGATCTGCTTTGGACTCTGCCTCGACTTCGATCCCTC
ATCCACCCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:647710..649569+

>mRNA_P-littoralis_Contig69.151.1 ID=mRNA_P-littoralis_Contig69.151.1|Name=mRNA_P-littoralis_Contig69.151.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig69:647710..649569+ (Pylaiella littoralis U1_48)
ATGGACTGTGCGAACACCGACGGAGAAATCTGCGGTGGGTTTGACGCCAT
CTCGGTGTACGAGATCGACTCCATACCGGCACCCACGCCGGCACCCGCTA
CGCTTGCGCCTGGCAGTGGGGACGGCTTCGTCTCGATTGGCTGCGCCGCG
GATTACAAAAATGCTAGGATTATGCCTGACGGGCCCCTAGCGGATACTAC
CCCCATGTCGGCAGAGATCTGCTTTGGACTCTGCCTCGACTTCGATCCCT
CATCCACCCAC
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