prot_P-littoralis_Contig69.146.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig69.146.1
Unique Nameprot_P-littoralis_Contig69.146.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length343
Homology
BLAST of mRNA_P-littoralis_Contig69.146.1 vs. uniprot
Match: A0A6H5J7Q1_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q1_9PHAE)

HSP 1 Score: 474 bits (1220), Expect = 6.810e-166
Identity = 273/342 (79.82%), Postives = 287/342 (83.92%), Query Frame = 0
Query:    1 MRLLAAVMVPCWLCKGFVPAGQRDAGGVLATSGARAAGGLRRRGGPAVVQTGRVPCNMLAGGRGGXXXXXXXXXXXXXXVLPREKLAKQAVFEGMEKVTAAKLLDGADAALKTWSTYRSGFLPPPDVNVMLKLLDPLLDVTVQAWGGHEQAERQRLFISRDGVLASELEEEVVALEIGGQFLFDMADHRDFLGAIVNLGITRDGIGDILVQGERGAQVLVDPVMAEFLCQSLLSVRSVTVKVRPIPLEELAVRAAKMKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAATSGTTDVREGDVVTVRGKGRVEIEEIRVTKKGRYKINMCRTT 342
            MRLL AVM P   C+G VPA  R   GV+A      A GLRRR G A   T RVP  + AGGR          XXXXX VLPREKL KQAV+EGMEK+TAAKLLDGAD+ALKTWSTY +GFLPPPDVNVM KLLDPLLDV VQ+WGGHEQAER+RLF+SR+GV ASELE EVVALEIGGQFLFDMADHRDFLGAIVNLG+TRDGIGDILVQGERGA VLVDPVMAEFL  SL SVRSV VKVRPIPLEELAVR AK KDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAA SGTTDV+EGDVVTVRGKGRVEI +I VTKKGRYKINM RTT
Sbjct:    1 MRLLTAVMFPWCFCRGLVPAASRR--GVVARG--MGAPGLRRRDGGAGAGT-RVPLTLRAGGR----------XXXXXGVLPREKLLKQAVYEGMEKLTAAKLLDGADSALKTWSTYTTGFLPPPDVNVMTKLLDPLLDVEVQSWGGHEQAERKRLFVSREGVSASELESEVVALEIGGQFLFDMADHRDFLGAIVNLGVTRDGIGDILVQGERGAHVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKTKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAAGSGTTDVKEGDVVTVRGKGRVEIGDITVTKKGRYKINMRRTT 327          
BLAST of mRNA_P-littoralis_Contig69.146.1 vs. uniprot
Match: A0A836CE46_9STRA (S4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE46_9STRA)

HSP 1 Score: 289 bits (740), Expect = 7.350e-94
Identity = 152/262 (58.02%), Postives = 200/262 (76.34%), Query Frame = 0
Query:   80 VLPREKLAKQAVFEGMEKVTAAKLLDGADAALKTWSTYRSGFLPPPDVNVMLKLLDPLLDVTVQAWGGHEQAERQRLFISRDGV-LASELEEEVVALEIGGQFLFDMADHRDFLGAIVNLGITRDGIGDILVQGERGAQVLVDPVMAEFLCQSLLSVRSVTVKVRPIPLEELAVRAAKMKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAATSGTTDVREGDVVTVRGKGRVEIEEIRVTKKGRYKINMCR 340
            VLP++KL  QA++ G++K  A ++LD A +AL+ W    + FL PP+ NVML +L+ L+D+   AWGGHE+AER+R+F + DGV +A+ +   VVALE+GGQFLFDMADHRD+LG+I+  GI R  +GDILVQGERGAQVL  P +A++LC +L SVRSVTVKV  +PL EL V     K V++VEASLRLD++ASAGMGMSRSKM+ AIKSG+V VNW+ A   +++V+  DV+TVRGKGR+EI EI  TKK RY++ M R
Sbjct:    8 VLPKDKLLSQAMYGGVDKQVATRVLDAAASALRNWELMATDFLTPPEYNVMLNVLEGLVDLQAIAWGGHEEAERRRMFFAHDGVDMATSVAVGVVALEVGGQFLFDMADHRDYLGSILGTGIERQKVGDILVQGERGAQVLCHPDIADYLCTNLSSVRSVTVKVDQVPLTELKVSPPIKKHVTSVEASLRLDAIASAGMGMSRSKMADAIKSGMVFVNWREAKGPSSEVKASDVITVRGKGRLEILEIHETKKERYRVVMNR 269          
BLAST of mRNA_P-littoralis_Contig69.146.1 vs. uniprot
Match: D7FH66_ECTSI (RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH66_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 1.700e-87
Identity = 145/158 (91.77%), Postives = 150/158 (94.94%), Query Frame = 0
Query:  185 MADHRDFLGAIVNLGITRDGIGDILVQGERGAQVLVDPVMAEFLCQSLLSVRSVTVKVRPIPLEELAVRAAKMKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAATSGTTDVREGDVVTVRGKGRVEIEEIRVTKKGRYKINMCRTT 342
            MADHRDFLGAIVNLG+TRDGIGDILVQGERGAQVLVDPVMAEFL  SL SVRSV VKVRPIPLEELAVR AK KDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAA+SGTT+VREGD+VTVRGKGRVEI +I VTKKGRYKINMCRTT
Sbjct:    1 MADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKTKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAASSGTTNVREGDIVTVRGKGRVEIGDITVTKKGRYKINMCRTT 158          
BLAST of mRNA_P-littoralis_Contig69.146.1 vs. uniprot
Match: A0A251WKT0_9CYAN (Photosystem II S4 domain protein n=2 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WKT0_9CYAN)

HSP 1 Score: 252 bits (643), Expect = 2.350e-79
Identity = 136/263 (51.71%), Postives = 185/263 (70.34%), Query Frame = 0
Query:   80 VLPREKLAKQAVFEGME-KVTAAKLLDGADAALKTWSTYRSGFLPPPDVNVMLKLLDPLLDVTVQAWGGHEQAERQRLFISRDGV-LASELEEEVVALEIGGQFLFDMADHRDFLGAIVNLGITRDGIGDILVQGERGAQVLVDPVMAEFLCQSLLSVRSVTVKVRPIPLEELAVRAAKMKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAATSGTTDVREGDVVTVRGKGRVEIEEIRVTKKGRYKINMCR 340
            +LPRE L K     G+E + T A+++D A+ A+KTW   ++ FL PP++  + ++   L D+ +  WGG+ QAERQR+ I+R  + L  E + E+ ALEI G FLFD A HRDFLGA++  GI RD +GDI+V GERGAQ +V P +AEFL   L  VRSV VK RPIPL EL +R  K K+++TVEAS+RLD++ASAG GMSRSKM+  I SG V VNWK  +S +  V+ GD++ VRGKGRVE+ ++ +TKK RY++N+ R
Sbjct:    1 MLPREDLLK-----GVENRETVAQVIDRAEQAIKTWEVVQTDFLAPPELAEVQQIFSRLTDIHLLTWGGYPQAERQRVAIARSEIPLDQETQVELTALEIAGNFLFDTATHRDFLGAMLGTGIVRDKVGDIIVLGERGAQAIVVPELAEFLAMQLTQVRSVPVKTRPIPLTELKIREPKKKELTTVEASMRLDAIASAGFGMSRSKMADLITSGDVRVNWKEISSTSHPVKSGDLIAVRGKGRVEVGDVAITKKDRYRVNLTR 258          
BLAST of mRNA_P-littoralis_Contig69.146.1 vs. uniprot
Match: A0A1Z4JNZ0_LEPBY (RNA-binding protein S4 n=1 Tax=Leptolyngbya boryana NIES-2135 TaxID=1973484 RepID=A0A1Z4JNZ0_LEPBY)

HSP 1 Score: 249 bits (636), Expect = 2.590e-78
Identity = 135/262 (51.53%), Postives = 181/262 (69.08%), Query Frame = 0
Query:   80 VLPREKLAKQAVFEGMEKVTA-AKLLDGADAALKTWSTYRSGFLPPPDVNVMLKLLDPLLDVTVQAWGGHEQAERQRLFISRDGVLASELEEEVVALEIGGQFLFDMADHRDFLGAIVNLGITRDGIGDILVQGERGAQVLVDPVMAEFLCQSLLSVRSVTVKVRPIPLEELAVRAAKMKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAATSGTTDVREGDVVTVRGKGRVEIEEIRVTKKGRYKINMCR 340
            +LPRE L K     G+E   A A+++D A+ A+KTW    S FL PP++  + +    L +V + AWGG+ QAERQRL I+R  +     + E+VAL+I G FLFD A HRDFLGAI+  GI RD +GDI+V GERGAQ +V P + EFL  +L  VRSV VK +PIP EEL +R  K K+++TVEAS+RLD++ASAG GMSRSKM+  I +G V VNWK  TS +  V+ GD++ +RGKGRVE+ ++ VTKK RY++ + R
Sbjct:    1 MLPREDLLK-----GVENREAIARVIDQAEQAIKTWEVVTSDFLSPPELAEIQRSFSRLTEVQLLAWGGYPQAERQRLAIARSEIPLDPSQVELVALDIAGNFLFDPATHRDFLGAILGTGIVRDKVGDIIVLGERGAQAIVTPELGEFLQTALTQVRSVPVKTQPIPFEELKIREPKKKEITTVEASMRLDAIASAGFGMSRSKMADLITAGDVRVNWKEITSSSYSVKAGDLIAIRGKGRVEVGDVMVTKKDRYRVQLTR 257          
BLAST of mRNA_P-littoralis_Contig69.146.1 vs. uniprot
Match: A0A0P4UVE6_9CYAN (S4 domain-containing protein n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A0P4UVE6_9CYAN)

HSP 1 Score: 248 bits (633), Expect = 7.340e-78
Identity = 134/262 (51.15%), Postives = 180/262 (68.70%), Query Frame = 0
Query:   80 VLPREKLAKQAVFEGME-KVTAAKLLDGADAALKTWSTYRSGFLPPPDVNVMLKLLDPLLDVTVQAWGGHEQAERQRLFISRDGVLASELEEEVVALEIGGQFLFDMADHRDFLGAIVNLGITRDGIGDILVQGERGAQVLVDPVMAEFLCQSLLSVRSVTVKVRPIPLEELAVRAAKMKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAATSGTTDVREGDVVTVRGKGRVEIEEIRVTKKGRYKINMCR 340
            +LPRE L K     G+E + T A+++D A+ A+KTW    S FL PP++    +    L +V + AWGG+ QAERQRL I+R  +     + E+ AL+I G FLFD A HRDFLGAI+  GI R+ +GDI+V GERGAQ +V P + +FL  SL  VRSV VKV PIP EEL +R  K K+++TVEAS+RLD++ASAG GMSRSKM+  I +G V VNWK  +S +  V+ GD++ +RGKGRVE+ E+ VTKK RY++ + R
Sbjct:    1 MLPREDLLK-----GVENRDTIARVIDQAEKAIKTWEVVTSDFLSPPELAEAERSFSRLTEVQLIAWGGYSQAERQRLAIARSEIPLDAAQVELTALDIAGNFLFDSATHRDFLGAILGTGIVREKVGDIIVLGERGAQAIVIPELVDFLQTSLKQVRSVPVKVEPIPFEELKIREPKKKEITTVEASMRLDAIASAGFGMSRSKMAEMISAGDVRVNWKETSSASYSVKSGDLIAIRGKGRVEVGEVMVTKKDRYRVQLTR 257          
BLAST of mRNA_P-littoralis_Contig69.146.1 vs. uniprot
Match: K9S3C7_9CYAN (Photosystem II S4 domain protein n=1 Tax=Geitlerinema sp. PCC 7407 TaxID=1173025 RepID=K9S3C7_9CYAN)

HSP 1 Score: 244 bits (622), Expect = 3.350e-76
Identity = 133/261 (50.96%), Postives = 176/261 (67.43%), Query Frame = 0
Query:   80 VLPREKLAKQAVFEGMEKVTAAKLLDGADAALKTWSTYRSGFLPPPDVNVMLKLLDPLLDVTVQAWGGHEQAERQRLFISRDGVLASELEEEVVALEIGGQFLFDMADHRDFLGAIVNLGITRDGIGDILVQGERGAQVLVDPVMAEFLCQSLLSVRSVTVKVRPIPLEELAVRAAKMKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAATSGTTDVREGDVVTVRGKGRVEIEEIRVTKKGRYKINMCR 340
            +LPR++L ++A      +  AA+L+D A+ A+KTW    + FL PP++    ++   L +V +  WGG+ QAERQRL I+R  +     + EV  LEI G FLFD A HRDFLGA++  GI RD +GDI+V G+RGAQ LV P M +FL  SL  VRSV VK +PI L EL VR  K K+++TVEAS+RLD++ASAG GMSRSKM+  I  G V VNW+  T  +  V+ GD+V VRGKGR+EI E+ VTKK RY+I + R
Sbjct:    1 MLPRDELLQKA----QNREAAAQLIDAAERAIKTWEVVLTDFLSPPEMADAQQMFGRLTEVQLMGWGGYPQAERQRLAIARPEIPLEASQVEVAVLEIAGNFLFDPATHRDFLGAVLGTGIVRDKVGDIVVLGDRGAQALVVPEMVDFLAMSLTQVRSVPVKTQPIDLAELKVREPKKKEMTTVEASMRLDAIASAGFGMSRSKMADLITGGDVRVNWRDVTQASYQVKAGDLVAVRGKGRLEIGEVAVTKKDRYRIQLTR 257          
BLAST of mRNA_P-littoralis_Contig69.146.1 vs. uniprot
Match: A0A7C3PHM9_9CYAN (Photosystem II S4 domain protein n=1 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3PHM9_9CYAN)

HSP 1 Score: 242 bits (618), Expect = 1.340e-75
Identity = 134/261 (51.34%), Postives = 174/261 (66.67%), Query Frame = 0
Query:   80 VLPREKLAKQAVFEGMEKVTAAKLLDGADAALKTWSTYRSGFLPPPDVNVMLKLLDPLLDVTVQAWGGHEQAERQRLFISRDGVLASELEEEVVALEIGGQFLFDMADHRDFLGAIVNLGITRDGIGDILVQGERGAQVLVDPVMAEFLCQSLLSVRSVTVKVRPIPLEELAVRAAKMKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAATSGTTDVREGDVVTVRGKGRVEIEEIRVTKKGRYKINMCR 340
            +LPRE L K    E  E +  A+++D A+ A+KTW    S FL PP++      L  L D+   AWGG+ QAERQRL I+R  +     +  + A+EI G FLFD A HRDFLGA++  GI R+ +GDI+V GERGAQ +V P + EFL  SL  VRSV VK R IP EEL +R  K K+++TVEAS+RLD++ASAG GMSRSKM+  I  G V VNWK  TS +  V+ GD++ +RGKGRVE+ EI VTKK RY++ + R
Sbjct:    1 MLPREDLLKGV--ENRELI--ARVIDQAEHAIKTWEVVISDFLSPPEMMEAQASLQRLTDIHCMAWGGYAQAERQRLAIARPEIPLDNTQVALAAIEIAGNFLFDPATHRDFLGAVLGTGIVREKVGDIIVLGERGAQAIVVPELVEFLSMSLTQVRSVPVKTRLIPFEELRIREPKKKEMTTVEASVRLDAIASAGFGMSRSKMADMISGGDVRVNWKDVTSASHQVKTGDLIAIRGKGRVEVGEIAVTKKDRYRVQLTR 257          
BLAST of mRNA_P-littoralis_Contig69.146.1 vs. uniprot
Match: A0A6P0XXH7_9CYAN (Photosystem II S4 domain protein n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0XXH7_9CYAN)

HSP 1 Score: 242 bits (617), Expect = 1.900e-75
Identity = 131/261 (50.19%), Postives = 186/261 (71.26%), Query Frame = 0
Query:   80 VLPREKLAKQAVFEGMEKVTAAKLLDGADAALKTWSTYRSGFLPPPDVNVMLKLLDPLLDVTVQAWGGHEQAERQRLFISRDGVLASELEEEVVALEIGGQFLFDMADHRDFLGAIVNLGITRDGIGDILVQGERGAQVLVDPVMAEFLCQSLLSVRSVTVKVRPIPLEELAVRAAKMKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAATSGTTDVREGDVVTVRGKGRVEIEEIRVTKKGRYKINMCR 340
            +LPREK+ ++A  E  E++  A++LD A++A K W    + FL PP +  +  +   L ++ V AWGG+ QAERQR+ I+R+ +   + + ++  L++ G FLFD A+HRDFLGAI+  G+ RD IGDI+V GERGAQV+V P + EFL  SL  VRSV VK R I   EL VR  K K+++TVEAS+RLD++ASAG+GMSRSKM+ AI SG V VNWKA T  + +V+ GD+++VRGKGR+E+ E+ +TKK RY++++ R
Sbjct:    1 MLPREKILQKA--EHREEI--ARILDLAESAGKNWEVVLTDFLSPPVLAEVQDIFSHLTELKVVAWGGYPQAERQRVAIAREELPLEQTQIQLALLDLAGNFLFDPANHRDFLGAILGTGVVRDKIGDIVVLGERGAQVIVVPELVEFLETSLAQVRSVPVKTRQIEFSELKVRPPKKKEITTVEASMRLDAIASAGLGMSRSKMAEAINSGDVRVNWKAVTQASYNVQSGDLISVRGKGRLEVGEVAITKKQRYRVHLTR 257          
BLAST of mRNA_P-littoralis_Contig69.146.1 vs. uniprot
Match: A0A0F6U623_MICAE (S4 domain-containing protein n=72 Tax=Microcystis TaxID=1125 RepID=A0A0F6U623_MICAE)

HSP 1 Score: 241 bits (616), Expect = 2.690e-75
Identity = 131/261 (50.19%), Postives = 184/261 (70.50%), Query Frame = 0
Query:   80 VLPREKLAKQAVFEGMEKVTAAKLLDGADAALKTWSTYRSGFLPPPDVNVMLKLLDPLLDVTVQAWGGHEQAERQRLFISRDGVLASELEEEVVALEIGGQFLFDMADHRDFLGAIVNLGITRDGIGDILVQGERGAQVLVDPVMAEFLCQSLLSVRSVTVKVRPIPLEELAVRAAKMKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAATSGTTDVREGDVVTVRGKGRVEIEEIRVTKKGRYKINMCR 340
            +LPRE+L K    E  E +  AK++D A+ A+KTW    + FL P  +  + ++   L DV++Q WGG+ QAERQR+ I+R  +  +E      AL+I G FLFD A+HRDFLGA++  GI R+ +GDI+V GERGAQ +V P +A+FLC +LL VRSV VK  PIPL EL VR  + K+++TVEASLRLD++ASAG G+SRSKM+ AI +G V VNWK  +  + +V+ GD+++ RGKGR+E+ E+ VTKK RY++++ R
Sbjct:    1 MLPREELLKGV--ENREDI--AKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQKWGGYPQAERQRIGIARVDLPLAEXXXXXXALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPELADFLCANLLQVRSVPVKTSPIPLTELKVRPPQKKEINTVEASLRLDAIASAGFGISRSKMAEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTR 257          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.146.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7Q1_9PHAE6.810e-16679.82S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CE46_9STRA7.350e-9458.02S4 domain-containing protein n=1 Tax=Tribonema min... [more]
D7FH66_ECTSI1.700e-8791.77RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A251WKT0_9CYAN2.350e-7951.71Photosystem II S4 domain protein n=2 Tax=unclassif... [more]
A0A1Z4JNZ0_LEPBY2.590e-7851.53RNA-binding protein S4 n=1 Tax=Leptolyngbya boryan... [more]
A0A0P4UVE6_9CYAN7.340e-7851.15S4 domain-containing protein n=6 Tax=Cyanobacteria... [more]
K9S3C7_9CYAN3.350e-7650.96Photosystem II S4 domain protein n=1 Tax=Geitlerin... [more]
A0A7C3PHM9_9CYAN1.340e-7551.34Photosystem II S4 domain protein n=1 Tax=Oscillato... [more]
A0A6P0XXH7_9CYAN1.900e-7550.19Photosystem II S4 domain protein n=1 Tax=Okeania s... [more]
A0A0F6U623_MICAE2.690e-7550.19S4 domain-containing protein n=72 Tax=Microcystis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 267..327
e-value: 3.5E-8
score: 43.2
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 268..313
e-value: 9.2E-7
score: 28.5
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 268..335
e-value: 5.92701E-9
score: 49.9406
IPR040591YlmH, putative RNA-binding domainPFAMPF17774YlmH_RBDcoord: 172..249
e-value: 1.8E-12
score: 47.4
NoneNo IPR availableGENE3D3.30.1370.160coord: 90..161
e-value: 1.5E-7
score: 33.2
NoneNo IPR availablePANTHERPTHR32219:SF3RNA-BINDING PROTEIN YLMH-RELATEDcoord: 95..340
NoneNo IPR availablePANTHERPTHR32219RNA-BINDING PROTEIN YLMH-RELATEDcoord: 95..340
NoneNo IPR availablePROSITEPS50889S4coord: 267..330
score: 11.904458
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 140..330
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 266..320
e-value: 5.3E-9
score: 37.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 167..251
e-value: 9.2E-21
score: 75.5
IPR017506Photosystem II S4TIGRFAMTIGR03069TIGR03069coord: 85..340
e-value: 1.4E-81
score: 271.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:617343..631260 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.146.1mRNA_P-littoralis_Contig69.146.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig69 616910..631844 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig69.146.1 ID=prot_P-littoralis_Contig69.146.1|Name=mRNA_P-littoralis_Contig69.146.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=343bp
MRLLAAVMVPCWLCKGFVPAGQRDAGGVLATSGARAAGGLRRRGGPAVVQ
TGRVPCNMLAGGRGGGRGRGGGGGGGGGGVLPREKLAKQAVFEGMEKVTA
AKLLDGADAALKTWSTYRSGFLPPPDVNVMLKLLDPLLDVTVQAWGGHEQ
AERQRLFISRDGVLASELEEEVVALEIGGQFLFDMADHRDFLGAIVNLGI
TRDGIGDILVQGERGAQVLVDPVMAEFLCQSLLSVRSVTVKVRPIPLEEL
AVRAAKMKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAA
TSGTTDVREGDVVTVRGKGRVEIEEIRVTKKGRYKINMCRTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR040591YlmH_RBD
IPR036986S4_RNA-bd_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR017506PSII_S4