prot_P-littoralis_Contig69.135.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig69.135.1
Unique Nameprot_P-littoralis_Contig69.135.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length55
Homology
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.640e-14
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0
Query:    1 MCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTNSFL 53
            M KDY   V+NMGGVDTAD QN ++ HDHKS  NHWRRVM+ KF Q FTN F+
Sbjct: 1034 MRKDY---VANMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGKFEQTFTNIFV 1083          
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Match: A0A6H5KIY7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.810e-13
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 0
Query:    1 MCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTNSFL 53
            M KDY   V+N+GGVDTAD QN ++AHDH++C N+WRRVM+AK  + FTN F+
Sbjct:  123 MRKDY---VANIGGVDTADQQNGSHAHDHEACTNYWRRVMEAKIEETFTNIFV 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.135.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JW40_9PHAE6.640e-1466.04HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5KIY7_9PHAE1.810e-1360.38DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:548655..548819 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.135.1mRNA_P-littoralis_Contig69.135.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig69 547408..548873 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig69.135.1 ID=prot_P-littoralis_Contig69.135.1|Name=mRNA_P-littoralis_Contig69.135.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
MCKDYVSKVSNMGGVDTADHQNSAYAHDHKSCYNHWRRVMDAKFAQMFTN
SFLG*
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