mRNA_P-littoralis_Contig69.133.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.133.1
Unique NamemRNA_P-littoralis_Contig69.133.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig69.133.1 vs. uniprot
Match: A0A6H5KRW3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW3_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.060e-37
Identity = 96/207 (46.38%), Postives = 130/207 (62.80%), Query Frame = 2 
Query:  197 VLEKQRPAKARAVPNDTRLIDPEGMAVSGQLEPGLIVHACPVTEVGRRLPGI-------TQKTEVLAINSGQG------GGSAEPTLGPETPGSGVAQEYNSDEARRFGERLCEITASEWAVEENKDPTASLALTIIAAGNTVEDIPTRSLPSSVVEDEVKRLVAQGTIIKLTDSKQLLVWRSSRVPTDRPNRRPGKYERLLGEEPV 778
             L  +   K  A+ ++T L+DP  M VSGQ E GLI+HA P+TEVGR L G+        ++  V+ INS +G      G  AEP +   + GS + + +NS EA+ FGERLCE TAS+W   + KD TA  AL +I     V  I    +P  V  D+VKRLVAQGTI+ L DS++LLV R++R P++RPNR PG+++RLLG+EPV
Sbjct:  487 ALRVEDEPKHYALKDETPLVDPGKMVVSGQWESGLILHAVPMTEVGRCLLGMGVIKKQRDKRKRVMVINSNEGXXXXXXGSEAEPVM--RSQGSQL-EGWNSKEAKEFGERLCEKTASDWVEAQYKDLTAKAALQLITDEVEVHKIGENDIPEGVDIDDVKRLVAQGTIMVLADSRKLLVRRATREPSNRPNRNPGQFDRLLGDEPV 690
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BLAST of mRNA_P-littoralis_Contig69.133.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 3.280e-31
Identity = 79/162 (48.77%), Postives = 105/162 (64.81%), Query Frame = 2 
Query:  386 GQGG-GSAEPTLGPETPGSGVAQEYNSDEAR---RFGERLCEITASEWAVEENKDPTASLALTIIAAGNTVEDIPTRSLPSSVVED--EVKRLVAQGTIIKLTDSKQLLVWRSSRVPTDRPNRRPGKYERLLGEEPVRTYVPLELRPWVMDCAHKEVVHLDD 853
            G GG G A P L P+ P     QEY+ ++ +    FGE+LC+ TAS+WA  + +D TA LA+T I      + +    +P  V  D  E+KRLV+QGT++ L +SK LLV +  + P + PNR PG++ER +GEEPVRTYVP  LRPWVMDCAHKE VHL +
Sbjct:  350 GSGGRGPAAPPL-PQIP----LQEYDEEQTQAAIEFGEKLCDKTASDWADIQEEDDTARLAITAIEGHADPKRMKEGDIPEGVDVDLDELKRLVSQGTLLVLPNSKHLLVRKELKAPAENPNRNPGQFERWVGEEPVRTYVPRMLRPWVMDCAHKEAVHLGE 506
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BLAST of mRNA_P-littoralis_Contig69.133.1 vs. uniprot
Match: A0A6H5JKZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ8_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.080e-14
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:  713 VPTDRPNRRPGKYERLLGEEPVRTYVPLELRPWVMDCAHKEVVHLDD 853
            +P +RPNR PG+YERLLGEEPVRTYVP+ LRPWVMDCAHKE +HL +
Sbjct:    1 MPAERPNRNPGEYERLLGEEPVRTYVPMLLRPWVMDCAHKEAIHLGE 47
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BLAST of mRNA_P-littoralis_Contig69.133.1 vs. uniprot
Match: A0A6H5KAM4_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM4_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.220e-14
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 2 
Query:  533 KDPTASLALTIIAAGNTVEDIPTRSLPSSVVED--EVKRLVAQGTIIKLTDSKQLLVWRSSRVPTDRPNRRPGKYERLLGEEPVRTYVPLELRP 808
            KD TA LA+T I      + +    +P  V  D  E+KRLV+QGT++ L +SK LLV +  + P + PNR PG++ERL+GE+PVRTYVP  LRP
Sbjct:  478 KDDTARLAITAIEGHADPKRMKEGDIPEGVDVDLDELKRLVSQGTLLVLPNSKHLLVRKELKAPAENPNRNPGQFERLVGEQPVRTYVPRMLRP 571
[Close]
BLAST of mRNA_P-littoralis_Contig69.133.1 vs. uniprot
Match: A0A6H5J755_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J755_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.150e-6
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:  689 LLVWRSSRVPTDRPNRRPG-KYERLLGEEPVRTYVPLELRPWVMDCAHKEVVHLDD 853
            LL+ + S  PT R  R  G K+ERLLG+EPVR YVP  LRPW ++  H E  HL +
Sbjct:   43 LLIKKPSEAPTSRAQRHSGGKFERLLGDEPVRLYVPFLLRPWALNAVHTEGCHLGE 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRW3_9PHAE1.060e-3746.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWR4_9PHAE3.280e-3148.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKZ8_9PHAE1.080e-1476.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM4_9PHAE6.220e-1448.94RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J755_9PHAE4.150e-651.79Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:538005..540283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1753
Hectar predicted targeting categoryother localisation
Exons2
Cds size813
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.070251-UTR-P-littoralis_Contig69:538004..5381761680791433.070251-UTR-P-littoralis_Contig69:538004..538176Pylaiella littoralis U1_48UTRP-littoralis_Contig69 538005..538176 +
1680791433.1062465-UTR-P-littoralis_Contig69:539515..5402831680791433.1062465-UTR-P-littoralis_Contig69:539515..540283Pylaiella littoralis U1_48UTRP-littoralis_Contig69 539516..540283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.0832787-CDS-P-littoralis_Contig69:538176..5388521680791433.0832787-CDS-P-littoralis_Contig69:538176..538852Pylaiella littoralis U1_48CDSP-littoralis_Contig69 538177..538852 +
1680791433.095079-CDS-P-littoralis_Contig69:539378..5395151680791433.095079-CDS-P-littoralis_Contig69:539378..539515Pylaiella littoralis U1_48CDSP-littoralis_Contig69 539379..539515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.133.1prot_P-littoralis_Contig69.133.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 538177..539515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.133.1

>prot_P-littoralis_Contig69.133.1 ID=prot_P-littoralis_Contig69.133.1|Name=mRNA_P-littoralis_Contig69.133.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=271bp
MEYLAGYGVLEKQRPAKARAVPNDTRLIDPEGMAVSGQLEPGLIVHACPV
TEVGRRLPGITQKTEVLAINSGQGGGSAEPTLGPETPGSGVAQEYNSDEA
RRFGERLCEITASEWAVEENKDPTASLALTIIAAGNTVEDIPTRSLPSSV
VEDEVKRLVAQGTIIKLTDSKQLLVWRSSRVPTDRPNRRPGKYERLLGEE
PVRTYVPLELRPWVMDCAHKEVVHLDDQNRERHNRLNPSQAAEQEGSRQR
RAKGQRDGRREGGEERARGR*
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mRNA from alignment at P-littoralis_Contig69:538005..540283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.133.1 ID=mRNA_P-littoralis_Contig69.133.1|Name=mRNA_P-littoralis_Contig69.133.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2279bp|location=Sequence derived from alignment at P-littoralis_Contig69:538005..540283+ (Pylaiella littoralis U1_48)
GTGCGGCTGACTGATCCCGAGGACATGGACGTGTACGTGATTGGAGCTGG
TAGTATCATCTCGATAGAGATGGGTTCCGGCTGGGGAGGGCGATGCGTTA
TATGGCAGCATAATTATCTAGTGGACTCCGGGGTGGGTGGAGAAGCACCG
CTGTCGTGGTCATTAAAATCAAATGGAATATCTCGCCGGGTATGGAGTAT
TAGAGAAGCAAAGACCGGCTAAAGCACGTGCGGTACCCAATGATACTAGA
CTGATCGATCCTGAAGGCATGGCGGTCAGTGGACAGCTGGAACCAGGGTT
GATTGTGCACGCGTGTCCGGTGACCGAGGTGGGTAGGCGGTTGCCGGGAA
TCACACAGAAAACTGAGGTGTTGGCTATTAATTCGGGTCAGGGTGGTGGA
AGTGCTGAACCCACGTTGGGGCCTGAAACACCTGGGAGCGGAGTCGCTCA
AGAATATAACAGTGATGAAGCACGCAGGTTCGGGGAACGTTTGTGTGAAA
TAACGGCTAGTGAATGGGCGGTGGAAGAAAATAAAGATCCCACGGCTTCA
CTGGCGTTAACTATAATTGCGGCGGGCAATACAGTGGAGGATATCCCGAC
GCGATCGCTGCCGAGCAGTGTGGTGGAAGATGAGGTTAAACGGTTGGTTG
CTCAAGGCACGATCATAAAACTGACAGACTCGAAACAATTATTGGTGTGG
CGTTCGTCTCGTGTGCCGACAGATAGGCCAAACCGGAGACCAGGCAAATA
TGAGCGGCTATTGGGAGAGGAGCCAGTGAGAACCTATGTGCCGCTAGAGC
TGAGACCTTGGGTGATGGATTGCGCTCACAAGGAGGTCGTTCATCTGGGT
GAGGAAGTCACGTTGGGACTGTTGCAGAGGATCTGTTTGTGGATTGGGAT
GGTAGAAAGTGTAAGTTGGTGGTGCAGAGGGTGCTGTTCTTGCCAGTTCA
GAAATATCCCACGAAATTTATCGAAATGGCCGCTAGTGTCCATACCGTTA
CCGAGTCGGCCAGGTCAAATGGTCTCATTCGATTGTTTAGGTCCGTTGCC
AAAGACCCAAAACGGGAATAATGTTTTTTTCCTAATTATTGATTTGTTCA
GCAGACATGCTGAAGGATATTCTATTACCAAAGGGGAGAAAAATGCCAAA
GGGTATGTGTCAATCATGGTGAACGACTATATACCGAGGTAGGGTTGCCT
GCACACTTTCTTATCGGACCGAGGACCAGAGTTTGCAACAGGTGTGGCGA
AGGGTGTTTTTAAAATGATGGGTTCGGGGAAGAAGTTCACGAGCTCATAA
CACCCCCAAACCAATGGTATGGTGGAAAGGCTAAAATCACACAGTGTGTC
AAATGCTCTCTCATTTGATAGCAGATGACCAGAATCGGGAAAGACACAAT
CGTTTGAACCCAAGTCAAGCAGCAGAGCAAGAAGGAAGCAGGCAAAGAAG
AGCGAAGGGGCAAAGAGACGGGAGGAGAGAAGGAGGAGAGGAGAGAGCCA
GGGGTCGCTAAGGGGGCATAGGTAGAGCGCGCCTTTTCTTTTCCCCGCCC
ACCCACCCGGGAAGTAAAGACACGGGGGGAAATTTGGAATACATGTCGAA
ATATACTGGCAGTTGCAGGCGTGGGATAGTACGGTTGGTTATGATGTGCA
TAATTGTGGTTCGGAATGTTTTAGTATCCGTTAACCGTTCTGGGTTGGTT
TGGTGTTGGGTTTCCGATGTGCAGATAACTGCTGGCGGCCCGTTATGAGG
CGGAACCATTCGGGCCATTTAGTCATCCGGGCCATTTAATGGAGTAATGA
TTCCCGGGATTTGGACGGGCCGTATGAGCGGAACCAATACTCTACACGAG
TGGTCGACTTTGGAATGGTACACCCAGGTCGTTTGGTTTTGGATTGGATT
TTCCCGTAAAAGCGGGCCGTTATGAGGCGGAATCTATGAAAAATCACATG
AAATGCCGTAATTGGTTGGTCTGGTGGTGGGTTTTCGCTGTGCAGATAAC
TGCTGGCGGGCCGTTATGAGGCGGAACCATCCGGGTCATTTAGTGGAGTA
TTTAGACGAGCCGTATAATGATCCAATACTTTACACAAGGACTTCGTGGT
CGACTTTGGAATGGTATACATTCAAGTCGTTCGGTTTTGGATTAGATTTT
CCCGTAGTAGTAAGAACGGGCCGTTATGGACGGAATCTTTGAAAAGCACA
CGCAGCGGAGAATTGTTGGCCAACTTCGGTTGACCAGCATGCGTGTCATC
CAGATTTCTCCTATGGAGGCGTTTCCTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:538005..540283+

>mRNA_P-littoralis_Contig69.133.1 ID=mRNA_P-littoralis_Contig69.133.1|Name=mRNA_P-littoralis_Contig69.133.1|organism=Pylaiella littoralis U1_48|type=CDS|length=813bp|location=Sequence derived from alignment at P-littoralis_Contig69:538005..540283+ (Pylaiella littoralis U1_48)
ATGGAATATCTCGCCGGGTATGGAGTATTAGAGAAGCAAAGACCGGCTAA
AGCACGTGCGGTACCCAATGATACTAGACTGATCGATCCTGAAGGCATGG
CGGTCAGTGGACAGCTGGAACCAGGGTTGATTGTGCACGCGTGTCCGGTG
ACCGAGGTGGGTAGGCGGTTGCCGGGAATCACACAGAAAACTGAGGTGTT
GGCTATTAATTCGGGTCAGGGTGGTGGAAGTGCTGAACCCACGTTGGGGC
CTGAAACACCTGGGAGCGGAGTCGCTCAAGAATATAACAGTGATGAAGCA
CGCAGGTTCGGGGAACGTTTGTGTGAAATAACGGCTAGTGAATGGGCGGT
GGAAGAAAATAAAGATCCCACGGCTTCACTGGCGTTAACTATAATTGCGG
CGGGCAATACAGTGGAGGATATCCCGACGCGATCGCTGCCGAGCAGTGTG
GTGGAAGATGAGGTTAAACGGTTGGTTGCTCAAGGCACGATCATAAAACT
GACAGACTCGAAACAATTATTGGTGTGGCGTTCGTCTCGTGTGCCGACAG
ATAGGCCAAACCGGAGACCAGGCAAATATGAGCGGCTATTGGGAGAGGAG
CCAGTGAGAACCTATGTGCCGCTAGAGCTGAGACCTTGGGTGATGGATTG
CGCTCACAAGGAGGTCGTTCATCTGGATGACCAGAATCGGGAAAGACACA
ATCGTTTGAACCCAAGTCAAGCAGCAGAGCAAGAAGGAAGCAGGCAAAGA
AGAGCGAAGGGGCAAAGAGACGGGAGGAGAGAAGGAGGAGAGGAGAGAGC
CAGGGGTCGCTAA
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