mRNA_P-littoralis_Contig69.124.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.124.1
Unique NamemRNA_P-littoralis_Contig69.124.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig69.124.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.620e-33
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:   67 RKASLDILEMRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS 360
            R  S DILE RFAHIR GMG HKAPTA+QAA+   HGDTCR+SHG +RRN+SRS G  F++Q  A++RVALPVNA ER EVVRAATW   DHVFE+R+
Sbjct:  795 RMFSQDILEHRFAHIRTGMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGS-FEVQSSASIRVALPVNASEREEVVRAATWDRDDHVFESRA 891
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BLAST of mRNA_P-littoralis_Contig69.124.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.640e-25
Identity = 57/98 (58.16%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:   67 RKASLDILEMRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS 360
            R  S DILE RFAHIR+G G HK PTA QA +A   GDT R+ HG RRRNSSRS G  F ++    +R A P NA ER +VVRA T  +A HVFE+RS
Sbjct:  571 RMFSQDILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSAGMAFQLEDSQGVRAAFPANASERAQVVRAETRDDAHHVFESRS 668
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFP1_9PHAE2.620e-3368.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.640e-2558.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:516920..517946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size383
Hectar predicted targeting categoryother localisation
Exons3
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791432.9830866-UTR-P-littoralis_Contig69:516919..5169541680791432.9830866-UTR-P-littoralis_Contig69:516919..516954Pylaiella littoralis U1_48UTRP-littoralis_Contig69 516920..516954 +
1680791432.9988604-UTR-P-littoralis_Contig69:517113..5171591680791432.9988604-UTR-P-littoralis_Contig69:517113..517159Pylaiella littoralis U1_48UTRP-littoralis_Contig69 517114..517159 +
1680791433.0093977-UTR-P-littoralis_Contig69:517644..5176561680791433.0093977-UTR-P-littoralis_Contig69:517644..517656Pylaiella littoralis U1_48UTRP-littoralis_Contig69 517645..517656 +
1680791433.0372815-UTR-P-littoralis_Contig69:517929..5179461680791433.0372815-UTR-P-littoralis_Contig69:517929..517946Pylaiella littoralis U1_48UTRP-littoralis_Contig69 517930..517946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791433.0223608-CDS-P-littoralis_Contig69:517656..5179291680791433.0223608-CDS-P-littoralis_Contig69:517656..517929Pylaiella littoralis U1_48CDSP-littoralis_Contig69 517657..517929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.124.1prot_P-littoralis_Contig69.124.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 517657..517929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.124.1

>prot_P-littoralis_Contig69.124.1 ID=prot_P-littoralis_Contig69.124.1|Name=mRNA_P-littoralis_Contig69.124.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
MRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNSSRSGGQPF
DIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRSV*
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mRNA from alignment at P-littoralis_Contig69:516920..517946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.124.1 ID=mRNA_P-littoralis_Contig69.124.1|Name=mRNA_P-littoralis_Contig69.124.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1027bp|location=Sequence derived from alignment at P-littoralis_Contig69:516920..517946+ (Pylaiella littoralis U1_48)
CCTCGACCGGCAAAATCTTGGCTGCGGTGGTCAAGGTAGGTGTTGGTCAG
GAGTGGTCGTCGTATACGCGCTATTCAATGGGCGTGTTTATCCAAGTACC
CGTCTCTTGCAACCTTGCTGCCACTCCTATGTGCCGGCGTTATTTACACA
GTGACTCTCGTGGTATGTTGGCCGATTTATATAACCCGCGCCAGGACGAG
GACCTCGCCTGCTACTACGGACTCAAGAAAAGCTTCTCTGGTAGGTCCAC
GACGTGAGTTCTTCGACGTATGGCAGATTTCCCTCCAAGCGTCCTTCGAA
CAAGGGGATTGGCAAAAGCACTTCATCACCGACCAGTCGTGGTTTGACAT
GCGCGCCACCATTCTTGGCTTCGTCTCGATGGCACGGTATATTTTCGCGG
ACAAGGATCTCGTCGAGGAAGTAGACGGGAAGGCGACCCGCTTCCTATAC
CCACGCATGTTCAGCCAGGTAACGAGCGTTTTTCCTGTTCTGTTTTTTTC
TTCGACGCAAGTACATGAACCGTTTGGCGGTGACCACCAGGGCGCGCCCG
TGCTGGTCAATAATCTGCAAGTGAACTCGGGGCTTGTGTGTGCGTATTTG
TAAAGTATATATTTTTGTTGGCTGGCGCGACGCTATCGTCGTGTGGTGCT
GGTGTCAATTAACTCCTTTATGTCCGTACGTTCGACTCCCTCGACGCGCG
TGACTGCCCCTTGCATCTCACCCAGGACATTCTCGAAATGAGGTTCGCGC
ACATAAGGGCTGGAATGGGGTGTCACAAGGCTCCTACGGCGTCTCAGGCG
GCTCAAGCTGGAATGCACGGAGATACTTGTCGGCTGTCCCACGGTGAACG
GCGTCGCAATTCGTCGAGATCGGGCGGGCAGCCGTTCGACATCCAACAGG
GAGCAACTCTGCGAGTGGCATTACCTGTTAACGCGGAAGAGCGAGGAGAA
GTAGTGAGAGCCGCCACGTGGCGCAATGCAGACCATGTGTTTGAGACGCG
CTCGGTGTGAAGTACTGCTGTGTGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:516920..517946+

>mRNA_P-littoralis_Contig69.124.1 ID=mRNA_P-littoralis_Contig69.124.1|Name=mRNA_P-littoralis_Contig69.124.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig69:516920..517946+ (Pylaiella littoralis U1_48)
ATGAGGTTCGCGCACATAAGGGCTGGAATGGGGTGTCACAAGGCTCCTAC
GGCGTCTCAGGCGGCTCAAGCTGGAATGCACGGAGATACTTGTCGGCTGT
CCCACGGTGAACGGCGTCGCAATTCGTCGAGATCGGGCGGGCAGCCGTTC
GACATCCAACAGGGAGCAACTCTGCGAGTGGCATTACCTGTTAACGCGGA
AGAGCGAGGAGAAGTAGTGAGAGCCGCCACGTGGCGCAATGCAGACCATG
TGTTTGAGACGCGCTCGGTGTGA
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