mRNA_P-littoralis_Contig69.86.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.86.1
Unique NamemRNA_P-littoralis_Contig69.86.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig69.86.1 vs. uniprot
Match: A0A6H5JTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTD4_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.880e-45
Identity = 82/113 (72.57%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:   10 VALAMARQLSQQLDSQRETLERRAKTAERLRESSRKKWSDCLSNKEKRNQTSEMHVRLAGLVGGSLSAWLICVALGLAWAPRASLALGLPCTLVMAALCSTRLPRPTVRLRTD 348
            VALAMARQLSQQLDSQRETLE RA TAE LR+ SR+K S+CL +  +R+Q +E+  RLAGLVGGSLSAWL CVALGL WAPR +LALG+PCTLVMAALCS R+P P+V+ R+D
Sbjct:   29 VALAMARQLSQQLDSQRETLEGRATTAEALRDFSRQKCSECLESHTRRDQAAEVPARLAGLVGGSLSAWLFCVALGLTWAPRVALALGIPCTLVMAALCSKRMPWPSVKRRSD 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTD4_9PHAE3.880e-4572.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:391399..393696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size351
Hectar predicted targeting categorysignal anchor
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-28_003430.1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791432.1356735-UTR-P-littoralis_Contig69:391398..3914191680791432.1356735-UTR-P-littoralis_Contig69:391398..391419Pylaiella littoralis U1_48UTRP-littoralis_Contig69 391399..391419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791432.146054-CDS-P-littoralis_Contig69:391419..3914431680791432.146054-CDS-P-littoralis_Contig69:391419..391443Pylaiella littoralis U1_48CDSP-littoralis_Contig69 391420..391443 +
1680791432.1561334-CDS-P-littoralis_Contig69:392091..3921961680791432.1561334-CDS-P-littoralis_Contig69:392091..392196Pylaiella littoralis U1_48CDSP-littoralis_Contig69 392092..392196 +
1680791432.170784-CDS-P-littoralis_Contig69:393226..3933461680791432.170784-CDS-P-littoralis_Contig69:393226..393346Pylaiella littoralis U1_48CDSP-littoralis_Contig69 393227..393346 +
1680791432.1834612-CDS-P-littoralis_Contig69:393615..3936961680791432.1834612-CDS-P-littoralis_Contig69:393615..393696Pylaiella littoralis U1_48CDSP-littoralis_Contig69 393616..393696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.86.1prot_P-littoralis_Contig69.86.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 391420..393696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.86.1

>prot_P-littoralis_Contig69.86.1 ID=prot_P-littoralis_Contig69.86.1|Name=mRNA_P-littoralis_Contig69.86.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MARQLSQQLDSQRETLERRAKTAERLRESSRKKWSDCLSNKEKRNQTSEM
HVRLAGLVGGSLSAWLICVALGLAWAPRASLALGLPCTLVMAALCSTRLP
RPTVRLRTD*
back to top

mRNA from alignment at P-littoralis_Contig69:391399..393696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.86.1 ID=mRNA_P-littoralis_Contig69.86.1|Name=mRNA_P-littoralis_Contig69.86.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2298bp|location=Sequence derived from alignment at P-littoralis_Contig69:391399..393696+ (Pylaiella littoralis U1_48)
GTATCTCAGGTGGCTTTGGCGATGGCAAGGCAACTCTCTCAGCAGGTGGG
CCTCTTGCTATTGTTGCCTCTTGTATATTATTTTCTGTTGGGACAGGCCA
GTCCACCGCTCGTTTTCTATTGACGGAATGAGAACCTACAAGATGTTTAT
CCGAGAAATCAAGGAAGATGTGAGAAATCATGTTCTTTGAAGTACTGGAG
TACACCTCTTCTTTTAACAGAGAATTTAGAATATTCATGAGATAGATTTT
GCTCTGAGCCAAGCGAAATGTTTATTATTACCCCCCGGCATAAGCCAACA
CTTTCTTGCGACTCGCCCAGCAACCCCACGGCGCTTCGCGCGTGCGTGGT
GAAATGCCTGATTGGGTGCCGAAACCCTGCAGGGGCAGGGCGGTTTCAGA
TATTTTAGCGCCCTACGCCCGTCGCAAGCCCTTTCACTCCCGCCTCCGGC
ACTGCAACATGAAGTGGATGTGCAGGTCTAATTGTAGTGCGTGGCACAGC
TATGAATATTTATCCTGCCCCCCGAACTCAAGCCACTTTATTGTGCAGAG
GTTTTACTCGTCGCCTTTCTACAGGACTGTCACGGTAAGTATATACGTAT
GTACGTGCATGAAATCCAAATGTTGTGCTGTATCGCCAAAGGTCACCCGA
CCTCTGATACTGTAGTGAAAAATATTTTGGAAACCCTCTTCAGCTGGACA
GCCAACGGGAGACTCTGGAGCGGAGGGCAAAGACGGCAGAAAGATTGAGA
GAAAGTTCCAGGAAAAAGTGGAGCGACTGTCTCAGCAACAAGGAGAAGGT
GAGTTGGGCGAGGTTGTGGTTCCCCGTACCCTGCTCTGTTCAGAAAGCAA
TTGTCGAACGCTTTCTGATGCACCGTGGTGTAGTTGTTTTGTCACTGCCG
ATAAGCTGTCCACTGGAGTTTTTTGTTCAGTTACCCGCCCGTCCGAACTA
TCAGAGTCTTTCCCAACAATTGCAACCCAAGTACCTGACGAGCCTTAACG
ACATGGAATAAATGTCAACTCACGCGTCCAGCTCGGAGCATATTTTCGAG
GAGCTATAGTGAAGGCTTGCATCTATCCGATTTGTGTCGGCTCCTCTTTT
TATTCTCGGCCTCCTGGTGGTGTTGGAAATGTCGTAAGCACCCCTTCACC
TGCTCAAATAGTGGAACGTTAAGTTTCTCCCGGCGACTCTCACCGGCCAT
GCTGTCTCGAGTCCCAACTATGAAATATAAGCAATTTTGAGTTCCCAATA
TTTTAACTTGCTCCATGCCTGCCCGCCGGATGGTGACACCGACAATCGCG
TTGTGACCATTTCACCTGGTGATCCTGACTGTGCGGGTGTTTAAGGATGA
AAACGCCTCCCTGTAATAACAAACCTCTCAGTTTAATTTCCACTTCAAGA
AGGTTTACGGCAGTGGTGCTACGTCGAAGCATCACACTTCCTATATGATA
CGTGTAGAACAGGCAATGTCGCCCAAGAAATTATAGCCCACGCAATGGTT
TGTCCATGAGCCATGCTGGTGCGCCGCTGGTGCGCCCACAGGGTTCGAAT
TGTTTAGGCGGGATAACACCACACATACATGTATTCTGTGCGACTACATC
GTGTTTTTTTTTTTAAGATTATATCGTGTCTATTGTGCACAGTACGAGTG
CGTCGTATCTATTCTGTTTTCGATACCCTTCCATCGAGCATCTGATTTGC
AACGTACGCGCTCGCCTTTTTTTGTTGTTGTTGACTTTGTGATGGCGATG
CGAAATCAATCAATGACACCTTGTTACACATGCGCCCATATCACTTTTTC
TCTGTTGTTTTTGCCTGCTGTGCGGCAGCGAAATCAAACCTCCGAGATGC
ACGTTCGATTAGCCGGGCTGGTGGGAGGATCGCTGTCTGCGTGGTTGATA
TGCGTGGCGTTAGGGTTGGCCTGGGCTCCCCGGGCTTCGCTGGCTTTGGT
GAGTAAGGCAGGCCTGTTTCTAGGTTACGAGCACTATCCGAGTTTTGCTA
ACCGGAATATGGAAGAGGAAACGCTTTCGCTGCTTTCGACGCTTGTGAGA
ACATGGAGCAGACACCTCTGCTTCGCGATCCCCCCGTGCCCGGCCTGTCG
GTCCCGATGATGTTTGTACTCGATGTAGCAGATCATATGTAAGAAGAGCT
CACATTTTCCACGCCTTTTCTTCTATTTTGTTTTTCGTGCCCCGCCCCTT
TCCCGCGCGTCCTTCAGGGGCTTCCTTGCACGTTGGTGATGGCGGCGCTG
TGCTCGACGCGTTTGCCACGGCCGACTGTTAGACTAAGAACCGATTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig69:391399..393696+

>mRNA_P-littoralis_Contig69.86.1 ID=mRNA_P-littoralis_Contig69.86.1|Name=mRNA_P-littoralis_Contig69.86.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig69:391399..393696+ (Pylaiella littoralis U1_48)
ATGGCAAGGCAACTCTCTCAGCAGCTGGACAGCCAACGGGAGACTCTGGA
GCGGAGGGCAAAGACGGCAGAAAGATTGAGAGAAAGTTCCAGGAAAAAGT
GGAGCGACTGTCTCAGCAACAAGGAGAAGCGAAATCAAACCTCCGAGATG
CACGTTCGATTAGCCGGGCTGGTGGGAGGATCGCTGTCTGCGTGGTTGAT
ATGCGTGGCGTTAGGGTTGGCCTGGGCTCCCCGGGCTTCGCTGGCTTTGG
GGCTTCCTTGCACGTTGGTGATGGCGGCGCTGTGCTCGACGCGTTTGCCA
CGGCCGACTGTTAGACTAAGAACCGATTGA
back to top