mRNA_P-littoralis_Contig69.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.19.1
Unique NamemRNA_P-littoralis_Contig69.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig69.19.1 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.570e-58
Identity = 114/185 (61.62%), Postives = 139/185 (75.14%), Query Frame = 3 
Query:  432 EGQHEEILSSDESSGVVVFGCFVAGALVGVVICAPAFVVLLFGAGAAALTKSDSKAGNFSRKVGKVSSDIIFAGVRIAREFNRKHRLTDKTKETAQQVASRVSTEVKKRGIVDDVKARTKSLWAHIQERTTPAGEAPSQAQAPPSAGLVTDGTQLPFGGTADAYETTPSSSEW--KSLPPKTFDA 980
            E  H+E+++ DE+SG++VFG F+AGALVGVVICAPAFVVLLFGAGAAALTKSDSK G FSRKVGKVSSDI+ A  R+ARE+N KH+LTDK K  A++ A +V+ +++K GIVD+VKAR  SLW  + +RT PAG+A  QA        VTDGTQ+PF G  DAY T  SSS    K   PK+FDA
Sbjct:   38 EQPHQEVIAHDEASGIIVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQASIQAAQGQDLSQVTDGTQIPFDGAVDAYVTDSSSSSSYSKGRKPKSFDA 222
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BLAST of mRNA_P-littoralis_Contig69.19.1 vs. uniprot
Match: D8LTQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ0_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 9.420e-37
Identity = 95/200 (47.50%), Postives = 127/200 (63.50%), Query Frame = 3 
Query:  417 LDQQQEGQHEE-ILSSDESSGVVVFGCFVAGALVGVVIC------APAFVVLLFGAGAAALTKSDSKAGNFSRKVGKVSSDIIFAGVRIAREFNRKHRLTDKTKETAQQVASRVSTEVKKRGIVDDVKARTKSLWAHIQERTTPAGEAPSQA-QAPPSAGLVTDGTQLPFGGTADAYET----TPSSSEWKSLPPKTFDA 980
            LD +QE  H+E  L+ DESS ++V G FVAGALVG ++C      AP  VVLL GAGAA  TKSDSKAG  SR+VGK + D+  A  R+ REFN K++LT K + TAQ+ A +V  EV++ GI D VK R +SLW  + +RT PAG+ P +A Q   +  L+ +  QL F   ADA E+    + SS + K++  + FDA
Sbjct:   25 LDTEQEHHHDESTLAHDESSAIIVLGSFVAGALVGAILCVRVFMFAPTVVVLLCGAGAAVFTKSDSKAGQISREVGKWTCDVFLALFRVVREFNYKYQLTVKVRITAQEAAGKVKAEVQRLGICDGVKTRARSLWEQVDKRTAPAGQPPIRAAQGQDTISLMMEEPQLGFDDAADALESKSCSSSSSEDEKTVRLRLFDA 224
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BLAST of mRNA_P-littoralis_Contig69.19.1 vs. uniprot
Match: A0A6H5JUV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.670e-25
Identity = 72/148 (48.65%), Postives = 92/148 (62.16%), Query Frame = 3 
Query:  417 LDQQQEGQHEE-ILSSDESSGVVVFGCFVAGALVGVVICA------PAFVVLLFGAGAAALTKSDSKAGNF----------SRKVGKVSSDIIFAGVRIAREFNRKHRLTDKTKETAQQVASRVSTEVKKRGIVDDVKARTKSLWAHI 809
            LD +QE  H+E  L+ DESS +++ G FVAGAL+G +ICA      P  VVLL GAGAA  T SDS+ G F          SR VGK +SD+  A  R+ REFN K++L DK K TAQ+ A +V  EV++ GI D VK R +SLW  +
Sbjct:   25 LDTEQEHHHDESTLAHDESSAIIMLGSFVAGALMGAIICARVFMFAPMVVVLLCGAGAAVFTNSDSEVGKFVVRLRWAGQISRGVGKWTSDVFLALFRVVREFNYKYQLADKVKITAQEAARKVKAEVQRIGICDGVKTRARSLWEQV 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTP8_ECTSI1.570e-5861.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LTQ0_ECTSI9.420e-3747.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUV7_9PHAE1.670e-2548.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:104655..108599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2109
Hectar predicted targeting categorysignal anchor
Exons4
Cds size708
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.19.1prot_P-littoralis_Contig69.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 104930..107473 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791429.8177612-UTR-P-littoralis_Contig69:104654..1049291680791429.8177612-UTR-P-littoralis_Contig69:104654..104929Pylaiella littoralis U1_48UTRP-littoralis_Contig69 104655..104929 +
1680791429.8700743-UTR-P-littoralis_Contig69:107473..1085991680791429.8700743-UTR-P-littoralis_Contig69:107473..108599Pylaiella littoralis U1_48UTRP-littoralis_Contig69 107474..108599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791429.8282104-CDS-P-littoralis_Contig69:104929..1052501680791429.8282104-CDS-P-littoralis_Contig69:104929..105250Pylaiella littoralis U1_48CDSP-littoralis_Contig69 104930..105250 +
1680791429.8399098-CDS-P-littoralis_Contig69:106150..1062551680791429.8399098-CDS-P-littoralis_Contig69:106150..106255Pylaiella littoralis U1_48CDSP-littoralis_Contig69 106151..106255 +
1680791429.851779-CDS-P-littoralis_Contig69:106850..1069641680791429.851779-CDS-P-littoralis_Contig69:106850..106964Pylaiella littoralis U1_48CDSP-littoralis_Contig69 106851..106964 +
1680791429.8609037-CDS-P-littoralis_Contig69:107305..1074731680791429.8609037-CDS-P-littoralis_Contig69:107305..107473Pylaiella littoralis U1_48CDSP-littoralis_Contig69 107306..107473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.19.1

>prot_P-littoralis_Contig69.19.1 ID=prot_P-littoralis_Contig69.19.1|Name=mRNA_P-littoralis_Contig69.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=236bp
MCKPTHPQQSGEPGAAAAAAAGDTPKRPQPEQQQSHTDYAVKSFELKLDQ
QQEGQHEEILSSDESSGVVVFGCFVAGALVGVVICAPAFVVLLFGAGAAA
LTKSDSKAGNFSRKVGKVSSDIIFAGVRIAREFNRKHRLTDKTKETAQQV
ASRVSTEVKKRGIVDDVKARTKSLWAHIQERTTPAGEAPSQAQAPPSAGL
VTDGTQLPFGGTADAYETTPSSSEWKSLPPKTFDA*
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mRNA from alignment at P-littoralis_Contig69:104655..108599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.19.1 ID=mRNA_P-littoralis_Contig69.19.1|Name=mRNA_P-littoralis_Contig69.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3945bp|location=Sequence derived from alignment at P-littoralis_Contig69:104655..108599+ (Pylaiella littoralis U1_48)
GAACGTTCTCGAATCAATGGGCTGACCAACCAGCAACGCACAGCAAGTAA
GGTGCAGAGTGCAGAAGCGGATTTTTTTCCGACCAAAATAACGTTCTTCG
AATTCCGGACGTTCTTCACAGTCCCGCCCTTTCTGCTGTTGAACACACAA
CCCACAACCTCCTCCGTCCACTCTCGCCAAACACACCAAACAAAGCACAC
CCACAGCAGCATATAGCAGTAGCGGCATCAGGAACAACAACAGCAGGAGA
GAGAAGTAGTTAAATCGCTGTAGCCATGTGCAAGCCCACCCACCCGCAGC
AGAGCGGTGAGCCAGGCGCTGCTGCTGCGGCGGCAGCGGGGGATACGCCA
AAGCGGCCCCAACCGGAACAACAGCAGTCTCACACGGACTATGCGGTCAA
GTCTTTCGAGCTCAAGCTCGACCAACAGCAGGAAGGGCAACACGAAGAAA
TTCTGTCCAGCGATGAGTCCAGCGGCGTCGTCGTGTTCGGCTGCTTCGTT
GCGGGCGCACTGGTGGGAGTTGTGATCTGCGCGCCTGCGTTTGTGGTGCT
GCTTTTCGGGGCCGGCGCTGCCGCCTTGACCAAGTCAGACAGCAAGGTGC
GTGCCCGGAAGGGAGGACCGTTGTCAACCAGCTGTTCAACATGGACATAT
AGAACTACAGCAGTATCTTGTCGTACTTGGCTGCTGATGGAAATTGGAAC
GGGATAGTGAAGCTGCGAATGTTGTTGTTGTTGTTGTTTGTTGTTTGATT
TTGCGCGCCCAGAGGTTGCGGCGGTAGAGTTAGCAACGTTTTTGAGATGA
ATATGCAGGCTTTCGGTGTCGATTCAGGTGGCGGGGGTGGGCGATGAGAT
GTCCCGCTGTGAGGTCGGTAATGACGTCAAAACGACAGATGAGCCGAACA
TGTATATCGTTCATTGGTTAAGTGACTCAGGATTGCACACTACTTACTCA
GGGGAAGGGCCGTCGTTGCAACCATTGGTAGCATGACTGGTACTGTATGG
TGCGGTACTCATCGACACTCGTCCGAAAGGAGGCAAACATACGGATTTTT
GAAGACAGTAGGTAAAAAGGGACGGAAAATGAAAAAACTTTTGCTCCTCT
ATTGCTTTATTTTTGTTTTGTGTGTATCTGAAGCATTGGCTAACAGCTGC
TGCAACTCGAATTTTACCCTGCAAGAGCCGCGTAGGCGACGGCTGGGATG
GCCCGGACTTGCGCGCCGACCCCACCCAATTCTCGTTTTCTGGGATTTCA
CTAGCAGTACAGGGCGACCTGAACCTGAGCGTGTTTGTTCGGGCCATCAT
TCGTGCGTAGACAAGGACGACAACCGTGGTACCTACTGCACCAGTTTTAC
GTTTAGGGCGGCCCTTTATAAACAAAAATCCTAATCATTTTCCCAAAGAC
TCACCATTGAGATGAAGCACATCATTCCACCAACACCAACATCAACAAAA
ACCCTTATCTTTTGTATTTTTTTTTGTGTGTGCGTGCTTGCCGCAGGCCG
GCAATTTTTCCCGTAAGGTAGGCAAGGTGTCGTCCGATATTATCTTCGCT
GGCGTCAGAATAGCCCGGGAGTTCAATCGCAAGCACCGCTTGACAGACAA
GGTGAGCGCAGCTTTGATCGGCCAACGGGTGGCAATGCATTATCCGACAC
CAGCCTGTTCACTCCATTCGGAGTTCTACGTACAGGGATCTCATGACGCA
TGCCACAACAGATGCTTCACTTTTTGCGCGGCTTGCGCTTGGTCCTTTTC
TCTCGCTCGCGGCCGTGATTTCCGCGTTTTTGTTGTTTCTATACTGCCAA
TAATATGCGGCGAAATCTCCTACCTTTCGGGGCAATAGGCGGCGTGATAA
TCAACTACGTATTGTCTTTGGAACACCGTGTTACCAAACGGAGCATTTTA
GCGTTCTTTGTTGCAGCATGTTCCCCCCCCCCTTTTTCGCAGAGGAGTGT
TGTATACACCATCAGGCGAGGGAAAAGGCAGCAGTAGGTCGGTTTCATGA
GATTCCACTTTCCTCATTATAATCTTTCACCATAATCTCGTGTTTGCTTT
TGAAAAGTCTTATTTTACAATGTGGCGCTCTGTTAGTTTTTCGTGTTTCC
CCTGGTAGGTTCAAACCTAATGTGAATAATGTTCCATCACTTATTGTTTT
GTGAACCTTTTTCTGTTACTCCGTTTTTTTTCTACACATATATCAGACCA
AGGAAACTGCGCAACAAGTGGCGTCAAGGGTAAGCACCGAGGTGAAAAAG
CGCGGCATTGTCGATGACGTTAAGGCCAGGACCAAGTCCCTATGGGCGCA
CATCCAAGAGGTGAGATCGGGCAATGAATTCAAGCAATCGCGAACTCACC
TAGCATTTGTACAATATGCACCGGTCACCCCGGCCGCCGACATTGCCGTC
CGTTGATTTAGAAGTCAGACCTAAATTGCCCTCACTTTGTCTTTGGTCCT
CTTCTGTGCGCCTGTGTCGCATTTCGGCCGAAAATCCTTCGTAGAAGAGG
CAATATCTTCCGAGATACACGTTAACAGGCGCCTAGTTCTTCTAGCGTGC
AGTACGAGTTCGCCTGCGAACCGTCACACTGGTTGCCCTCCCCCGCCCAC
GTGCCCCTTTCGATGCCATGCTTCTGCTGGTGATATCCTCACAATTTTCA
GCGCACCACACCTGCCGGTGAGGCTCCGTCACAAGCTCAGGCTCCACCCT
CGGCTGGTCTGGTCACCGACGGGACGCAGCTCCCTTTTGGCGGCACGGCA
GATGCGTACGAAACTACCCCTTCCTCGTCCGAATGGAAGAGCTTGCCTCC
GAAGACCTTCGACGCTTGACCGAACAAGTCTCAGAGTAAAAAATCGAACA
CCAGATAGCCTCCCGTACTGGTGTGTACTACACTGTGCCTGTCGATGTTA
CTGTATTATGCGTGTTGGGAGTATCGCGCCCGAAACGATGTGTGGTGGTA
ACAATAGTTCCAAGGGATGTGTATTGGGGGCGAGACAACGAGATTCTCGC
ATGTTGAGGACCCGCTCACTGTTTTTCCGCTGATCGGTCGACCTTGTGTG
TTGTAGTGAAGAAGAGGGTGTACCACCGCCGCTCGAGTCGCCCTTGGACG
CCCACACAGCATGCCTACGTCTACCGTGCAAACCTGTCGCGGGGCCTTTT
TTTGTCTGTATGTATACGAAGTATATATTTCGGAGTTTGTTTTGTGCTGT
TGGTCGGGCTTTCCTCTTCGACACCAGGTGGTGTGTATAGAGCCCCGTGT
ACATCGTTTCGGGGGTGGTTGCTTCTTGCGCACACTTCAATCGTTCGAAA
TGATACCTTCCTTATTTGTTTGCCAGTAGGGAGCATGCGTTTTTCAAGTG
GCCACCGAGGACTCTCCTTAGGCCCTGTCGTGTCTATGACACGGCGAGAC
ACGAGCTGTTTGCCATGGTCGTGCGATGATGACTTCTCGTAGGATCCTCG
AATCGTTATGCAAAGAAACTTCCTGACTGTGAAATTAGGGGAATGAACCG
CCCGCCGGCGCGCTCGGGCTCCGGGTATATCGAAAGCAAGCTTGGTGTGA
CCGGTGGCGGGGGGAAGACAATATTTTTAGCAAGACATAGATTGGCACTG
TGTTAACATCTCACGTGATCTCCCCGGTACCCGGGATCGTATCCGCCCGT
TCAAAAACTGCGAGCGCCGCTAAATTATGTCATGGGGAGAATACTTTTTC
AACACACCGCCCCTTGATTCTTGGCTACTAACGGAAAGACACGAAGCTGA
TTCCTTTTCCGATGTGCGTGTGCAGTCATATTGTAGACATGCTGATGCGT
GCCGCGGACAAGAACCGACATTTTTAGTCGATGGGTTTATGTTCACTTTA
TCTCGTCGATATAGTTGAATCGGCTTCGAGACCCTCTCGTCAAATGCTTG
ACGCGTGGAGCTGAACAACTTGTTTTTACGAACGCCGACGTCATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:104655..108599+

>mRNA_P-littoralis_Contig69.19.1 ID=mRNA_P-littoralis_Contig69.19.1|Name=mRNA_P-littoralis_Contig69.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=708bp|location=Sequence derived from alignment at P-littoralis_Contig69:104655..108599+ (Pylaiella littoralis U1_48)
ATGTGCAAGCCCACCCACCCGCAGCAGAGCGGTGAGCCAGGCGCTGCTGC
TGCGGCGGCAGCGGGGGATACGCCAAAGCGGCCCCAACCGGAACAACAGC
AGTCTCACACGGACTATGCGGTCAAGTCTTTCGAGCTCAAGCTCGACCAA
CAGCAGGAAGGGCAACACGAAGAAATTCTGTCCAGCGATGAGTCCAGCGG
CGTCGTCGTGTTCGGCTGCTTCGTTGCGGGCGCACTGGTGGGAGTTGTGA
TCTGCGCGCCTGCGTTTGTGGTGCTGCTTTTCGGGGCCGGCGCTGCCGCC
TTGACCAAGTCAGACAGCAAGGCCGGCAATTTTTCCCGTAAGGTAGGCAA
GGTGTCGTCCGATATTATCTTCGCTGGCGTCAGAATAGCCCGGGAGTTCA
ATCGCAAGCACCGCTTGACAGACAAGACCAAGGAAACTGCGCAACAAGTG
GCGTCAAGGGTAAGCACCGAGGTGAAAAAGCGCGGCATTGTCGATGACGT
TAAGGCCAGGACCAAGTCCCTATGGGCGCACATCCAAGAGCGCACCACAC
CTGCCGGTGAGGCTCCGTCACAAGCTCAGGCTCCACCCTCGGCTGGTCTG
GTCACCGACGGGACGCAGCTCCCTTTTGGCGGCACGGCAGATGCGTACGA
AACTACCCCTTCCTCGTCCGAATGGAAGAGCTTGCCTCCGAAGACCTTCG
ACGCTTGA
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