mRNA_P-littoralis_Contig69.18.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.18.3
Unique NamemRNA_P-littoralis_Contig69.18.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig69.18.3 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.520e-35
Identity = 81/142 (57.04%), Postives = 100/142 (70.42%), Query Frame = 1 
Query:    1 AGAAALTKSDSKAGKFSRKVGKLSSDVILAGVRIAREFNQKHRLVDKTKETAQRVASRVSTEVKKRGIVDDVKARTKSLWAHIQERTTPAGEAPSQAQAPPSAGLVTNGTQLPFGGTADAYGTTPSSSEW--KSLPPKTFDA 420
            AGAAALTKSDSK GKFSRKVGK+SSD++LA  R+ARE+N KH+L DK K  A+  A +V+ +++K GIVD+VKAR  SLW  + +RT PAG+A  QA        VT+GTQ+PF G  DAY T  SSS    K   PK+FDA
Sbjct:   81 AGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQASIQAAQGQDLSQVTDGTQIPFDGAVDAYVTDSSSSSSYSKGRKPKSFDA 222
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.18.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTP8_ECTSI2.520e-3557.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:91589..94919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1418
Hectar predicted targeting categoryother localisation
Exons4
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791429.7335567-UTR-P-littoralis_Contig69:91588..925831680791429.7335567-UTR-P-littoralis_Contig69:91588..92583Pylaiella littoralis U1_48UTRP-littoralis_Contig69 91589..92583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791429.748617-CDS-P-littoralis_Contig69:92583..927511680791429.748617-CDS-P-littoralis_Contig69:92583..92751Pylaiella littoralis U1_48CDSP-littoralis_Contig69 92584..92751 -
1680791429.7609444-CDS-P-littoralis_Contig69:93094..932081680791429.7609444-CDS-P-littoralis_Contig69:93094..93208Pylaiella littoralis U1_48CDSP-littoralis_Contig69 93095..93208 -
1680791429.770688-CDS-P-littoralis_Contig69:93866..939711680791429.770688-CDS-P-littoralis_Contig69:93866..93971Pylaiella littoralis U1_48CDSP-littoralis_Contig69 93867..93971 -
1680791429.7862139-CDS-P-littoralis_Contig69:94883..949191680791429.7862139-CDS-P-littoralis_Contig69:94883..94919Pylaiella littoralis U1_48CDSP-littoralis_Contig69 94884..94919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.18.3prot_P-littoralis_Contig69.18.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 92584..94919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.18.3

>prot_P-littoralis_Contig69.18.3 ID=prot_P-littoralis_Contig69.18.3|Name=mRNA_P-littoralis_Contig69.18.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
AGAAALTKSDSKAGKFSRKVGKLSSDVILAGVRIAREFNQKHRLVDKTKE
TAQRVASRVSTEVKKRGIVDDVKARTKSLWAHIQERTTPAGEAPSQAQAP
PSAGLVTNGTQLPFGGTADAYGTTPSSSEWKSLPPKTFDA*
back to top

mRNA from alignment at P-littoralis_Contig69:91589..94919-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.18.3 ID=mRNA_P-littoralis_Contig69.18.3|Name=mRNA_P-littoralis_Contig69.18.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=3331bp|location=Sequence derived from alignment at P-littoralis_Contig69:91589..94919- (Pylaiella littoralis U1_48)
GCCGGCGCTGCCGCCTTGACCAAGTCAGACAGCAAGGTGCGTTGCCCGGA
TAGAGAGATGGTCGTTCAACTACTGCTGTAGCTGTTCAACATGGACATAT
CGAATTACAGCAGGTATCTTGTCGCGCTTGGCTGCCGATGACAATTTGGG
ACGGGATAGTGAAGCTGCGAGTGTTGTTGTTGTTCGATTTTGCGCGCCCA
GAGGCAGCGGTAGAGCTAGCAGCGTTTGTGAGATATGCATGGTCTCAGTG
TCGATTCAGGTGTCGGGGGTGGGTGATGGAATTTCCCCCTGTGACGTCGG
TGATTACGTCAAAACGACAGATGCACCGAACATGTATCGTTCGTATGATA
GGTCAAGTGACTCGGAATACCAGACGAGGAGAATTGCACACTACTTACTC
AGGGGGGGGGTCGTCGCTGCAACAACTGGTAGCATGACTGGTACTATATT
TTGTGTCCATTGCTACAGAGTATGTGAAGTAGTTCTTGACACTCGTCAAC
GCGACATCGTGAATATTTTGTGGGTAAAAGGGGACGTAAAATGGAAAGTC
TTTCGCTTCTCCATGACGGCTTTTTTTTGTTTTATGTGTAGAGTTATCCC
AAGCATACAGCTGCTGTAACTCGAATCTTACCCTGCAAGAGCCGCGTGGG
CGACGGCTGAGATCGGCCGAACTTGCACGCCAACCCTACCCAATTATCGT
TTTATATGGGACTGCGCTACCGGTACGGGGCGACCTGAACCTGAGCGTGT
TTGTTCGGGCCGTCATTCATGCGTAGACAAGAACGACGACCGCGGTACTG
CACCAGTTTTTCGATCAGGGCGGCCCTTTATTTACAATAATCCTCATCAT
TTTCCCATCCTTTTCCCCGAAGATTACGCTCCATCCAGATGTAGCACGTA
CTCATCCCACCAACACCAAAACCAACATTGTGTGCGTGCTTGCCGCAGGC
CGGCAAATTTTCCCGCAAGGTAGGCAAGCTGTCGTCCGATGTTATCCTCG
CTGGCGTCAGAATAGCCCGGGAGTTCAACCAAAAGCACCGCTTGGTCGAT
AAGGTGAGCGCCGCTATGACCGGCCAACGGGTGGCAATGCAAGATACGAT
ATCTGGTGTCGGATAGCCTGTTCACTCCATTTGGAATTATTTGTACAACA
ATGAACAGTGATAATATGACACGTGACCCAACAAATGCTTTAATTTTGTC
GCCGCTTGCGTTTGGCCCTTGCTCTCTTAACGTGACCTCACAGCCGTGTC
TTACGCGTTCTTCATGTATAGAACACTGTACAACTGTCGGGAGAATTTTA
GCGTTATTTTTTCCAGCATGTTTCCCCCCCCTTGTCGGCCGGAGAGTATG
GTATGCACCATCAAGCAAGGGTACAGGCAGCAGTGGGTGGGTTTGCTGAA
AGCAATACACTTCCAGTGTTCTCACGTGTGCACAGACCACGTTGTCTGTG
TCTGTCCGTATTCGTAGAAGTGTACGTTTTACTATCTCTGACGGTTTTTA
TATGTATTGTTTCACTTTCGTCACCGTGGCCTTTCGCCATAATCTCGTGT
TTGCTTTCGAAATGGCTTCTGGTAAAATGTGGCACTCAATCAGTTTTTCG
TGTTTGCCCCTGGTACGTTCAAACCTGGTGTGCATGATGTTCCACCACTT
TTATTTTGCGGCCCTTCTTATACAACATGATTCTACTCCGTTTTTTCCAA
CAATTTATCAGACCAAGGAAACTGCGCAACGAGTGGCGTCGAGGGTAAGC
ACCGAGGTGAAAAAGCGCGGCATTGTCGATGACGTTAAGGCCAGGACCAA
GTCCCTGTGGGCGCACATCCAAGAGGTGAGAACGGTCAATGGTTTCAAGC
AATCGCGAACGCACTGCAAACAATTGTACAATGTACACCGGTCACCCCGG
CCCTCGACATTGCTGACCGTTGATTTAGAAGTCAGACCTAAATTGCCCGC
ACGTTTCCTTACCGTCCCTTTTCTGTGCACCTGTGTCGCTTTTCGGCCGA
AACTCCTTCGTAGAAGAGGCAATATCTTCCGAGATACACATACGTACACG
GGCGCCTAGTTCTTCTAGCGTGCAGTACGCCTGCGAACCGTCACACTGGT
TGCCCTCCCCCGCCCACGTGCCCCTTTCGATGCCATGCTTCTGCTGGTGA
TATCGTCGCAATTTTCAGCGCACCACACCTGCCGGTGAGGCTCCGTCACA
AGCTCAGGCTCCACCCTCGGCTGGTCTGGTCACCAACGGGACGCAGCTCC
CTTTTGGCGGCACGGCAGATGCGTACGGAACTACCCCTTCCTCGTCCGAA
TGGAAGAGCTTGCCTCCGAAGACCTTCGACGCTTGACCGAACAAGTCTCA
GAGTAAAAAATCGAACACCAGATAGCCTCCCGTACTGGTGTGTACTACAC
TGTGCTTGTCGATGTTACTGTATTATGCGTAATGGAGTATCGCGCCCGAA
ACGATGTGTGGTGGTAACAATAGATCCAAGGGGTGTGTATGGGGGGCGAG
ACACGAGTTTCTCGCATGTTGAGGACCCGCTCACTGTTTTTCCGCTGATC
GATGGGCCTTGTGTGTTGTAGTGGAGAAGAGGGTGTACCACCGCCGCTCG
AGTCGTCCTTGGACGCCCACACAGCATGCTTACGTCTACCGTTTAAACCC
GTTGGAGCCTTGTTTGTCTGTAGTTGTGTATATATTCCGGAAATTTTATT
TGTGTGCTGTTGGTCGGGCTTTCCTCTTCGACGCCAGGTGTACATAAAGC
CCCGCGTACATCGTCCCGAAGTGATACTGCGTAAGAGAGTTCGTTGCGTT
CGCAGTTTGAGCATCTTATTTGTTTGCCAGAAGAGAGCATGCGTTTTTCA
AGTGGCCACCGAGGACTCTCCTTAGGCCCTATTGCGTTTGTGACACAGCG
AGACACAAGCTGCTGGCCATGATTGTGCCATGGTTGTGTTATGATGAGTT
CTTGTAGAGTCCTCGAATCGATGTTTGAAAACGACCTTTTGACTGAACTG
AGGGGAAACGTACTTGCCCGCCCCGCGTCCGGGCTCCGGGTATATCGAAA
GCAAGCTACTTGATGTGGCCGATTGCAGGGGAAAACAACTCCTCAGCAAG
ACGTTCCATAGGTTGGCATTCTGCTAACCATCATGTGATATACCGGTACC
CCGGATCGGGTCCACCCCTTCAAAACTGCGAGCGCCGGTAAAATATGTCA
TGGGGAGAATGCTGTTTTCAACACGCCGTCCCTTGATTCCCGGCTACAAA
CGGATAGACACGTGGCTGACTCCCATTCCGATGTGCGTGTGCAGTTATGT
TGCAGAGATGCTGATGCCTGGAGCGGACAAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig69:91589..94919-

>mRNA_P-littoralis_Contig69.18.3 ID=mRNA_P-littoralis_Contig69.18.3|Name=mRNA_P-littoralis_Contig69.18.3|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig69:91589..94919- (Pylaiella littoralis U1_48)
GCCGGCGCTGCCGCCTTGACCAAGTCAGACAGCAAGGCCGGCAAATTTTC
CCGCAAGGTAGGCAAGCTGTCGTCCGATGTTATCCTCGCTGGCGTCAGAA
TAGCCCGGGAGTTCAACCAAAAGCACCGCTTGGTCGATAAGACCAAGGAA
ACTGCGCAACGAGTGGCGTCGAGGGTAAGCACCGAGGTGAAAAAGCGCGG
CATTGTCGATGACGTTAAGGCCAGGACCAAGTCCCTGTGGGCGCACATCC
AAGAGCGCACCACACCTGCCGGTGAGGCTCCGTCACAAGCTCAGGCTCCA
CCCTCGGCTGGTCTGGTCACCAACGGGACGCAGCTCCCTTTTGGCGGCAC
GGCAGATGCGTACGGAACTACCCCTTCCTCGTCCGAATGGAAGAGCTTGC
CTCCGAAGACCTTCGACGCTTGA
back to top