mRNA_P-littoralis_Contig69.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.8.1
Unique NamemRNA_P-littoralis_Contig69.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig69.8.1 vs. uniprot
Match: A0A6H5L6V3_9PHAE (Dolichol-phosphate mannosyltransferase subunit 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V3_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 6.720e-43
Identity = 72/93 (77.42%), Postives = 79/93 (84.95%), Query Frame = 2 
Query:   68 MKRYQKLLGPIFMGLCAWGAVLGYCAKTGECGTPMREVVEPFPMYCLMAFGCYALAKIGLGLIAFKDCSEDAALLDKDIQDARYDLARRGFKF 346
            MKRYQKLLGPI +GLCAWG V GYCAK GEC  P+ +V+E  PMY L+ FGCYALAKIGLGLIAFKDCSEDAALLD+DIQ AR DL +RGFKF
Sbjct:    1 MKRYQKLLGPILLGLCAWGVVRGYCAKQGECRQPILDVIEVLPMYNLIVFGCYALAKIGLGLIAFKDCSEDAALLDEDIQAARKDLTKRGFKF 93
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BLAST of mRNA_P-littoralis_Contig69.8.1 vs. uniprot
Match: D8LTQ4_ECTSI (Dolichol-phosphate mannosyltransferase subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ4_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.870e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:  194 PMYCLMAFGCYALAKIGLGLIAFKDCSEDAALLDKDIQDARYDLARRGFKFS 349
            PMY L+ FGCYALAKIGLGLIAFKDCSEDAALLD+DIQ A+ DL +RGFKFS
Sbjct:    5 PMYNLIVFGCYALAKIGLGLIAFKDCSEDAALLDEDIQAAKKDLTKRGFKFS 56
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BLAST of mRNA_P-littoralis_Contig69.8.1 vs. uniprot
Match: UPI00106D7D31 (dolichol-phosphate mannosyltransferase subunit 3-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D7D31)

HSP 1 Score: 73.6 bits (179), Expect = 1.710e-12
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 2 
Query:  170 MREVVEPFPMYCLMAFGCYALAKIGLGLIAFKDCSEDAALLDKDIQDARYDLARRGFKF 346
            +++V+ PFP+Y ++ FGCY+L  IG  +I F DC + A  L K+IQ+AR DL+RRGFKF
Sbjct:   34 IKDVLLPFPLYMVIVFGCYSLVVIGYRVITFNDCEDAADSLRKEIQEARKDLSRRGFKF 92
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BLAST of mRNA_P-littoralis_Contig69.8.1 vs. uniprot
Match: UPI00145562C7 (dolichol-phosphate mannosyltransferase subunit 3-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145562C7)

HSP 1 Score: 72.8 bits (177), Expect = 3.270e-12
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:  170 MREVVEPFPMYCLMAFGCYALAKIGLGLIAFKDCSEDAALLDKDIQDARYDLARRGFKFS 349
            ++EV+ P P+Y ++ FGC++LA IG  +  F DC E AA L K++++AR DL R+GFKF+
Sbjct:   35 IKEVIVPLPVYLVIVFGCFSLATIGYRVATFNDCEEAAASLKKEVEEARKDLTRKGFKFT 94
[Close]
BLAST of mRNA_P-littoralis_Contig69.8.1 vs. uniprot
Match: A0A6S7FMJ6_PARCT (Dolichol-phosphate mannosyltransferase subunit 3 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FMJ6_PARCT)

HSP 1 Score: 70.9 bits (172), Expect = 1.510e-11
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:  170 MREVVEPFPMYCLMAFGCYALAKIGLGLIAFKDCSEDAALLDKDIQDARYDLARRGFKF 346
            +++VV PFP Y ++ FGCY+L  IG  ++ F DC + A  L K+IQ+AR DL+++GFKF
Sbjct:   34 VKDVVLPFPFYMVIVFGCYSLIVIGYRVLTFNDCEDAAESLRKEIQEARKDLSKKGFKF 92
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BLAST of mRNA_P-littoralis_Contig69.8.1 vs. uniprot
Match: A0A2B4RBY9_STYPI (Dolichol-phosphate mannosyltransferase subunit 3 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RBY9_STYPI)

HSP 1 Score: 70.9 bits (172), Expect = 1.510e-11
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:  173 REVVEPFPMYCLMAFGCYALAKIGLGLIAFKDCSEDAALLDKDIQDARYDLARRGFKF 346
            +EV+ P P+Y L+ FGCY+LA IG  +  F DC E +  L ++I DAR DL++RGFKF
Sbjct:   35 KEVIWPIPVYALIVFGCYSLATIGYRVATFNDCVEASESLKQEINDAREDLSKRGFKF 92
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BLAST of mRNA_P-littoralis_Contig69.8.1 vs. uniprot
Match: UPI0008541F8E (dolichol-phosphate mannosyltransferase subunit 3 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008541F8E)

HSP 1 Score: 70.5 bits (171), Expect = 2.010e-11
Identity = 42/92 (45.65%), Postives = 53/92 (57.61%), Query Frame = 2 
Query:   71 KRYQKLLGPIFMGLCAWGAVLGYCAKTGECGTPMREVVEPFPMYCLMAFGCYALAKIGLGLIAFKDCSEDAALLDKDIQDARYDLARRGFKF 346
            K  Q LLG I +G  AW A L +     E     REVV PFP+Y L+AFGCY+LA IG  +  F DC + A  L + I  A+ +L+RRG  F
Sbjct:    3 KLAQWLLGLILLG-GAW-ATLTFDLLGLEPPRACREVVWPFPVYLLVAFGCYSLATIGYRVATFNDCEDAARELQEQIGQAKKELSRRGMSF 92
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BLAST of mRNA_P-littoralis_Contig69.8.1 vs. uniprot
Match: UPI000F556FEE (dolichol-phosphate mannosyltransferase subunit 3-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F556FEE)

HSP 1 Score: 70.1 bits (170), Expect = 2.820e-11
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:  173 REVVEPFPMYCLMAFGCYALAKIGLGLIAFKDCSEDAALLDKDIQDARYDLARRGFKF 346
            +EV+ P P+Y L+ FGCY+LA IG  +  F DC E +  L ++I DAR DL+++GFKF
Sbjct:   35 KEVIWPMPIYALIVFGCYSLATIGYRVATFNDCVEASESLKQEINDARQDLSKKGFKF 92
[Close]
BLAST of mRNA_P-littoralis_Contig69.8.1 vs. uniprot
Match: A0A225VVI0_9STRA (Dolichol-phosphate mannosyltransferase subunit 3 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225VVI0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.070e-11
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:   68 MKRYQKLLGPIFMGLCAWGAVLGYCAKTGECGTPMREVVEPFPMYCLMAFGCYALAKIGLGLIAFKDCSEDAALLDKDIQDARYDLARRGFKF 346
            M +YQK L    + L  W  +L Y A+  +    ++ VV   PMY L++FG Y+LA I L ++A +D  E A  LD+ + +A+ DLA++GFKF
Sbjct:    1 MLKYQKWLVGFVVLLALWLLLLRYAAEQDD-PRALQVVVTVLPMYALVSFGAYSLAVIALSVMAVQDFPEAAKELDRQVVEAKADLAKKGFKF 92
[Close]
BLAST of mRNA_P-littoralis_Contig69.8.1 vs. uniprot
Match: A0A8B7YRM4_ACAPL (Dolichol-phosphate mannosyltransferase subunit 3 n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7YRM4_ACAPL)

HSP 1 Score: 68.9 bits (167), Expect = 7.390e-11
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 2 
Query:  170 MREVVEPFPMYCLMAFGCYALAKIGLGLIAFKDCSEDAALLDKDIQDARYDLARRGFKFS 349
            M+EV+ P P+Y L+ F C++LA IG  +  F DC E A  L K+I++AR DL ++GF+F+
Sbjct:   35 MKEVIVPLPVYLLIVFACFSLATIGYRVATFNDCEEAAESLKKEIEEARKDLKKKGFRFT 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6V3_9PHAE6.720e-4377.42Dolichol-phosphate mannosyltransferase subunit 3 n... [more]
D8LTQ4_ECTSI1.870e-1982.69Dolichol-phosphate mannosyltransferase subunit 3 n... [more]
UPI00106D7D311.710e-1252.54dolichol-phosphate mannosyltransferase subunit 3-l... [more]
UPI00145562C73.270e-1248.33dolichol-phosphate mannosyltransferase subunit 3-l... [more]
A0A6S7FMJ6_PARCT1.510e-1149.15Dolichol-phosphate mannosyltransferase subunit 3 n... [more]
A0A2B4RBY9_STYPI1.510e-1151.72Dolichol-phosphate mannosyltransferase subunit 3 n... [more]
UPI0008541F8E2.010e-1145.65dolichol-phosphate mannosyltransferase subunit 3 n... [more]
UPI000F556FEE2.820e-1150.00dolichol-phosphate mannosyltransferase subunit 3-l... [more]
A0A225VVI0_9STRA4.070e-1139.78Dolichol-phosphate mannosyltransferase subunit 3 n... [more]
A0A8B7YRM4_ACAPL7.390e-1146.67Dolichol-phosphate mannosyltransferase subunit 3 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:40213..43500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI42513
PFAMsDPM3
Model size1559
Max annot lvl4776|Peronosporales
KEGG rclassRC00005
KEGG koko:K09659
KEGG ReactionR01009
KEGG Pathwayko00510,ko01100,map00510,map01100
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.66e-15
EggNOG OGsKOG4841@1|root,KOG4841@2759|Eukaryota,3QGFU@4776|Peronosporales
Ec32 ortholog descriptionDolichol-phosphate mannosyltransferase subunit 3
Ec32 orthologEc-28_003210.1
DescriptionDolichol-phosphate mannosyltransferase subunit 3 (DPM3)
Cds size342
COG categoryS
CAZyGT2
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791429.00393-UTR-P-littoralis_Contig69:40212..402221680791429.00393-UTR-P-littoralis_Contig69:40212..40222Pylaiella littoralis U1_48UTRP-littoralis_Contig69 40213..40222 +
1680791429.0624123-UTR-P-littoralis_Contig69:42293..435001680791429.0624123-UTR-P-littoralis_Contig69:42293..43500Pylaiella littoralis U1_48UTRP-littoralis_Contig69 42294..43500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791429.0229704-CDS-P-littoralis_Contig69:40222..404021680791429.0229704-CDS-P-littoralis_Contig69:40222..40402Pylaiella littoralis U1_48CDSP-littoralis_Contig69 40223..40402 +
1680791429.0333421-CDS-P-littoralis_Contig69:41489..415971680791429.0333421-CDS-P-littoralis_Contig69:41489..41597Pylaiella littoralis U1_48CDSP-littoralis_Contig69 41490..41597 +
1680791429.048128-CDS-P-littoralis_Contig69:42239..422931680791429.048128-CDS-P-littoralis_Contig69:42239..42293Pylaiella littoralis U1_48CDSP-littoralis_Contig69 42240..42293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.8.1prot_P-littoralis_Contig69.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 40223..42293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.8.1

>prot_P-littoralis_Contig69.8.1 ID=prot_P-littoralis_Contig69.8.1|Name=mRNA_P-littoralis_Contig69.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MSDLYHQTPPSRSYLFADTMKRYQKLLGPIFMGLCAWGAVLGYCAKTGEC
GTPMREVVEPFPMYCLMAFGCYALAKIGLGLIAFKDCSEDAALLDKDIQD
ARYDLARRGFKFS*
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mRNA from alignment at P-littoralis_Contig69:40213..43500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.8.1 ID=mRNA_P-littoralis_Contig69.8.1|Name=mRNA_P-littoralis_Contig69.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3288bp|location=Sequence derived from alignment at P-littoralis_Contig69:40213..43500+ (Pylaiella littoralis U1_48)
GCTGTGTCTGATGTCTGATCTGTATCATCAGACGCCACCGTCTAGGAGTT
ATCTATTCGCCGACACTATGAAGCGTTACCAAAAGCTTCTTGGTCCCATT
TTCATGGGCCTGTGTGCGTGGGGAGCGGTGTTGGGGTACTGTGCAAAAAC
TGGAGAGTGCGGAACGCCGATGCGAGAGGTCGTCGAACCGGTGAGTTTAT
GTTTTGTACTGATAAAGAAGACAATAACACGCTGCTCAAGTAGTCTTCGG
AGAATATCATGTGTGCGGGTTGAGGGTTGAGAGGCCGTTGGCAGCAGCCG
ACGTTTAAAATAATACTCTCACCGTCTGTAACGCTGCTGGGAATACAAGT
GTATCCCTCACCCCGTTCCAGGTGTGATGTGATAGATGGCGCTACGCAGC
AAGACCTGTTACGGGTAGTATACAAAGTAGAACCCTATCCACGCGTGCAC
CATCGAGATACACCCACAGGCCGTGTTCAAGAGTCGTCGAGAAAGGCATT
GCGCAAGTGCTTTAGCTGGTCCTGGCGATGCCTCGTGTGTTGTAGGATGT
GCAGAAAGCGTGTTTCATTCTCCTGTGTAGTTTCGCCCATACGATCGGTT
TGGATTGGGTCCGCGAAATATGATCGCACTTTGCTCGAAAATCGGAGCGG
CTGCCGACAGACACCTGGTCCAAAACTCCAAATAACGAGTGCCGGCCGCA
CCTTGACGCTGCTGCGTGTGCCATGTATCCTCGCGTGGGTTAGTCGTCTA
GCCATCAAGCAGTTGCGCTGCTGGGGTGCCAGTTCTCTGGCTTGTTGGAA
GCCCCATTCTTTCTTAGTCTACCGAACGTGGAGACTTTGCTGTAGGGGAA
CGGGCGCAGTGTAATCCCTCTTGCTAGATGCACATCGATCTCGCTTCGTC
AGTCTGGTTTTATGATAAGTCTCCCAGAGGCTGTTAAGAGTTCTCTTTAA
TCGTACCAGCAGTACAACCGGAGCGAGAGCAGGAGCGACCAATCTATGTC
GAAACGTAGCAACATATGACACGTTCGTCTTCACTTCCAGGTGTGCGCTG
GTGTCGCCACTGGTGTATCGCAATAACCTGCCGGGTGACCGTTTGCGTTT
GCAGCACGGCGAATGTGTCCTTGTCTACAGACAAACGCTGCATCTCGGGG
CAGCCGCGGAACAAACGCAACATCGTCCTTACCACGGTCGGTTGAAATCT
GATCCTGCCTCCCACGCCCCCGCACCCCCTCTCGTGCTTGACGCCTGTAT
TTTGTCCATTCAACGCCGCGATCGAAGTTTCCGATGTACTGTTTGATGGC
ATTTGGATGCTACGCGCTGGCGAAAATCGGGTTGGGTCTGATCGCTTTCA
AGGACTGTTCAGAAGATGCTGCGCTCCTTGATAAGGTGAGCACGTGGTTT
CGAGGTCAGTGGTGGTAGGATCCACTGAAACACCATTGAAGGTGGCCCTG
GTTCGAATGTTGTGTTGTGCTCCATCGCATATTGTAAGTTGGTCATGTGC
AGTTCATGCGTCCGAAATGTAACAAGCGCAGACTATGGCACTTGATTATT
GAGGGAGCACGGTATCCAAGTGCATGTATACATAAGGGTTCCAGCTGCCT
AATGAAAGGAACAATCGCTACCCACATAATCGCACGCATGGGTTCTTCTC
ATGGGGCATATTGTTTGCTCCAAGACGGCGGGCATAATCCCTAGCCTCCA
AAAATGTCCGCATTTTGTAGAGGTGGCGTAATAAGCGAACAATGTGATTT
TTCGCTGCCTGGCACTTTCTTCCTTTGACCCCCGAAGCCAAAGACGACAA
GATTTCTCCAAAATGTCGATACACAACTTTGACAGCACTTCGTTTGGTAC
AGACAACGTAGGACTGCCACGGTGGCCTCTTGCGCCTCCGCTCCTACGTG
CTTCCCATGTAGTATCTGTAAGGTTGTAGTAGAATGCCCCCCCCCCCCGT
CACCCTCACGGTCCCCCATTACTTTCGTCGTGAACCGCACGTTACCGCTG
CCGTGTTTGACATTTTGTTTTTCGTAGGATATCCAAGATGCCAGATATGA
TCTCGCAAGGCGAGGGTTCAAATTTTCGTGAGCTCCAGGAGCTCCCGAGG
CTAATGCTGTCTGTCGCTGTCCCCGCGAGTGTTTAGTTTTTGGGCGGGCT
GTTGTGTTTACTGTATTGTCTGCGCGGTTCGATCCGGAGCGTGTATGGCG
GTGTATATATAATTGTTGCGTGTGTTTGATAACCAGTGTGAATGTGGTGC
TTTTGTCTTCTCTCGCAGCTAATCTTGGTTACGCGCATCCGTGGTGTAGA
GCGGGGGATACAGCTCTGTAGGGTCATTCGGGGCCTCGATAAACGTGTTG
TGGCCATTCACTGGTGATCCTAGTGAACTTCGCTGGTTGTGCGGCGACCC
CATCACGTTTATACACTAGTGTTTCTAGCATTGGTATTGGCAGTGGGCGT
GGAGAATCCGAGGTGAAATTTAATTTTTGTGGAATGTAGGCATGACCGGG
TCTTCGCGGCCCTGTCGCTGCTGTGTCCTAACACAGTGATATCGGTCTTC
GACTCACCAGTTCATCTCGGGTAAAGCTCGCACGAAATGTGACATTGGGC
TGATTTTCCAACAGCATAAATTATACTTCGAAGTATGGTTTGGCAAAACA
CGCCTGATGTGAAACCCTCTAATTATAAATCGACAGAGGTCCTGGTATAT
CTCATTCCGAACTTGGCGGAAAATTGATGAGCACTTTTTATCTTCTCGGG
GTTGCGGAGTTTGGGGTATTTGGTCAGAATTCCGGAAACACGGTCAAATT
CATACTCCGTTCTCAGGTCAGCTCTCTGTGTTGTGGTTTTTGGGATTTTA
AACACACTTGGTCTTGGGGTTTGAAACGCTTGGAATGTAATTAATCGTCT
GTTTTGGTGGGGAACCCCCGGCGGTTCGAATACGCAAAGAATGCGGCCTG
CTGTCGTTTCCGATGTCGCGACGGTGTGTTGATTATTCAAGCTTGTTGCT
TGCGCAAGACTTCCAAAAAGATCGCCATGGTCGTGAGCTGAAGTAAGGTG
CCGTTGAACGAGGATTTCATGAAGTGTTTTTGGAGCAGAACCCTCGGTAT
AGTTATTCTTTCACGATCCGTCTACTTGTGGTTCCTGAAGAGGCGGAAGT
ACACGGACACCAGCAGAAAGATTAGGTGCAAAGTGTGCAAATACTGACAA
GAGCGCTACATCTCGGGGTACTCTCTGCAAGTAACCCTGGCACCATCGAT
AGTGCACGAATCCCGAAATCAAATTCATGGCACCAAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:40213..43500+

>mRNA_P-littoralis_Contig69.8.1 ID=mRNA_P-littoralis_Contig69.8.1|Name=mRNA_P-littoralis_Contig69.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig69:40213..43500+ (Pylaiella littoralis U1_48)
ATGTCTGATCTGTATCATCAGACGCCACCGTCTAGGAGTTATCTATTCGC
CGACACTATGAAGCGTTACCAAAAGCTTCTTGGTCCCATTTTCATGGGCC
TGTGTGCGTGGGGAGCGGTGTTGGGGTACTGTGCAAAAACTGGAGAGTGC
GGAACGCCGATGCGAGAGGTCGTCGAACCGTTTCCGATGTACTGTTTGAT
GGCATTTGGATGCTACGCGCTGGCGAAAATCGGGTTGGGTCTGATCGCTT
TCAAGGACTGTTCAGAAGATGCTGCGCTCCTTGATAAGGATATCCAAGAT
GCCAGATATGATCTCGCAAGGCGAGGGTTCAAATTTTCGTGA
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