mRNA_P-littoralis_Contig1171.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1171.16.1
Unique NamemRNA_P-littoralis_Contig1171.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1171.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1171contigP-littoralis_Contig1171:45614..48416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size401
Hectar predicted targeting categoryother localisation
Exons2
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789490.9609945-CDS-P-littoralis_Contig1171:45613..456391680789490.9609945-CDS-P-littoralis_Contig1171:45613..45639Pylaiella littoralis U1_48CDSP-littoralis_Contig1171 45614..45639 +
1680789490.9718413-CDS-P-littoralis_Contig1171:48043..484161680789490.9718413-CDS-P-littoralis_Contig1171:48043..48416Pylaiella littoralis U1_48CDSP-littoralis_Contig1171 48044..48416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1171.16.1prot_P-littoralis_Contig1171.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1171 45614..48416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1171.16.1

>prot_P-littoralis_Contig1171.16.1 ID=prot_P-littoralis_Contig1171.16.1|Name=mRNA_P-littoralis_Contig1171.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
PRLAITEKRYTRKCTGREECGDGRGGGCHGRGNHTGGVVCRRPWRKTAKQ
IGSSKWLNFGSDIYVAALSAIERVGRSRVPLPFIVAFGYRHHLRYPPWEC
PAFQFKCFRNNFVFLLMVRGSWSKRYKLSAGW*
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mRNA from alignment at P-littoralis_Contig1171:45614..48416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1171.16.1 ID=mRNA_P-littoralis_Contig1171.16.1|Name=mRNA_P-littoralis_Contig1171.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2803bp|location=Sequence derived from alignment at P-littoralis_Contig1171:45614..48416+ (Pylaiella littoralis U1_48)
CCCCGGTTGGCAATAACCGAAAAAAGGTGTGACTCAAATTGCCTATCTGT
ACCTTCAGAAATACCTCAGTACATTATAGCACTGCGTCAATCAATGTTGT
TACTGGACTTGCCAGCGAGCGACCCAAACCTATCTAGCAGTATGCAGTGG
AGTGGACCTCCCTAGATTTCCGCACACATACCTAATGGATGCTCCATACG
CTGCACAACGATCCACGGTGCAATGGATGCTCCATACGCTGCACAACGAT
CCACGGTGCAAATGCTGCTGCTGCTACACGTAGACCCAACGAGAAAGCTC
CATAACAGCGCCATGGCATGGGGGGCCCCATGGAGCTAACTCCATAGTGA
CTCCACAGAGCTCCATGTAGGCTCTATGTACTCGGTGGGCTCCATCGAAG
TCCATAGCGACTACATCCAAGCTCCAAAGAGCCTCCATGGAGCCTCCATA
GAGCTATGGAGGCTCCATGGAGCTATATGGAGGCTCCATGGAGGCTCCAT
GGAGGCTCCACTGAAGTCCATGGAGACTCCAACCAGGTCGATAGAGTTTC
CATAGAGGCTTCTTAGAGATCCATGAAGGATGCCATAGGCCTCCATGGAG
TAATGAAGACTCCATGGAAGCTCCATGGAAGCTCCACGGAGGCTCCAGGG
AAGCCCCATGGAGGCTCCATTGCTCCATGGAGGCTCCATGGGATACTCCA
TGTGATGCTCCATGGAGCCTATTATGGATCCTCCACGGAGGCTCCATTGC
TCCATGGAGTCTCCGTGGAGGTTCCATAGACTCCATGGAGCTCCATGGAG
CTCTATTGAGGATCCACGGAGCAATGGAGGCTCTATGGAGCCTCCATGGA
ATCTCCATGGGACTCCGTGGTGGAGTTCCATGGGAAAAAGAGAATAGTGT
GTAGCCCCCAACTATCTCGCCAAACACGGCTACATGAGCGAAATGGAAAC
AGCACACTGGTATCGAAAGTATTTTTGAATCTACAGAAACTCGTGCTGCA
ACTTCGTAGCTTGAAGCAATGAGATATCCCATTTCGATGGAGGCTCACCT
ACCCAGCCATCCACAGCGCAATAAAAAAATATGACAGCAAACCACCAGCC
AAAAGCCCGCTGGGCTACTGTGTGCTGCATGAAGTAGATGCTTTGCTCAA
GTCAGGACGCGCGCATCAAGTCTACAGAGTTGTACCAAGTCGTGGTTCCT
CGTGTTGCGATCAGAATTCTTCACTTTTTTGGTCCGTCGCAGCAACCACT
CGACGAAATATGAGCCCGCTCTGAGTTCAGAAAAGCAGTTCCGTAAAGTG
TACTACCGTAGCCAAGCCCGTGAGACTGTCTAGAGTCCCTCGTCATACGA
GCATATGACCATGCGTTTCGTCAACCTTGGCCTGCAAGGTGAGATAATAG
CGGCCCACCTCAATAGCCCCACGGATCGCAGAGACAGGCATTTGAGAACA
TGCACTAAAAAACACACACACACACACACCAGGTCGTTTAGCGTCCCTTT
TCTAGACAACACTAACCCCCCAAAAATGGAGAAACCAAATGTTGCGCGCA
GGCGCGGGGTCTTGTGGCCGTGTTAAGGTTAATACGGTTTTGGCCGGGCC
GAAAACGACGCTCAGCAACACTGGCGGTACAAGCAATCGGGGTCACACAC
AAGGCAAAGAAGAATATCACACCGAAGATAAACGAGTGCGCTCGTGATGC
ATGGCTTCTGTCGTCAAAAACAATGGAGAAAATATTGAAGCATGTCGTTC
ATCACGCTGTAAATCTCTACCCCAACAAGCAGAGCATAAAATCATAGAAC
TTCGAAGTAACGTGGATGCAAAAAACCAAAAACGATAGCTAGACGAAATA
CGTGTAGCTTATGAAAGTGCCAGGTTGGACACAGACTAAGTCACCAATGC
CACCGCTGCTGCAAGTGCAGAGATCCACCAAGGGTACGAAGTGTTGTACT
AAACGGCGCCAACGTGCGGTACTCAGGCATCATGTCTCCCTGTTGAAACG
AGAAAAACCAGAAAACTTACCGAACTCGAATGCTCAACACCCTACTAGAC
GAAATACGTGTAGCTTAACGGGGACACAACCACAAATACGCGTTCCCCGC
CCTCACCGTTCTCCGTGTAAAGTAGCCCTCCAGCGATACATCGATGCAAC
CCTACACGGCGAAGGGGAAATGATCGAAGCAACAGTCAACGCGTGGAAAG
CCAGGCATTTGAGGCATCGCCTACGACAAAATGACGGCGTTGAGTTCGGT
CATCGTCAGTGAAATCTGATGTCCCTCACACCATTGATCCGAAAATAAAT
AGACAAGACGACCAACGCTGGACAGAACAATCTGGTCATCAATAACTATG
CCCGATTGTTCTTCTTCGTGCCTCTCGAAGGCAAACGACCATCGAAACTT
AGATGCGTGGAACCGATACATACGCAACAGGTACACACGAAAGTGCACGG
GCAGAGAAGAGTGTGGCGATGGGCGAGGTGGAGGGTGTCATGGGCGAGGC
AACCACACTGGCGGCGTCGTATGTAGGAGGCCTTGGAGAAAGACTGCCAA
ACAGATCGGGTCCTCGAAATGGTTAAATTTTGGTTCGGATATCTATGTTG
CGGCGCTGAGCGCCATCGAGCGGGTTGGGCGGAGTCGCGTGCCATTGCCG
TTCATTGTCGCTTTTGGCTATAGGCATCACTTGCGATACCCGCCCTGGGA
GTGCCCTGCGTTCCAGTTTAAATGCTTCAGAAACAATTTCGTTTTTCTAT
TAATGGTACGGGGCTCGTGGTCGAAGAGGTACAAACTGTCTGCTGGTTGG
TAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1171:45614..48416+

>mRNA_P-littoralis_Contig1171.16.1 ID=mRNA_P-littoralis_Contig1171.16.1|Name=mRNA_P-littoralis_Contig1171.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig1171:45614..48416+ (Pylaiella littoralis U1_48)
CCCCGGTTGGCAATAACCGAAAAAAGGTACACACGAAAGTGCACGGGCAG
AGAAGAGTGTGGCGATGGGCGAGGTGGAGGGTGTCATGGGCGAGGCAACC
ACACTGGCGGCGTCGTATGTAGGAGGCCTTGGAGAAAGACTGCCAAACAG
ATCGGGTCCTCGAAATGGTTAAATTTTGGTTCGGATATCTATGTTGCGGC
GCTGAGCGCCATCGAGCGGGTTGGGCGGAGTCGCGTGCCATTGCCGTTCA
TTGTCGCTTTTGGCTATAGGCATCACTTGCGATACCCGCCCTGGGAGTGC
CCTGCGTTCCAGTTTAAATGCTTCAGAAACAATTTCGTTTTTCTATTAAT
GGTACGGGGCTCGTGGTCGAAGAGGTACAAACTGTCTGCTGGTTGGTAG
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