mRNA_P-littoralis_Contig69.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.53.1
Unique NamemRNA_P-littoralis_Contig69.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:203781..204346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size566
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791428.4090338-CDS-P-littoralis_Contig69:203780..2040951680791428.4090338-CDS-P-littoralis_Contig69:203780..204095Pylaiella littoralis U1_48CDSP-littoralis_Contig69 203781..204095 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791428.4245417-UTR-P-littoralis_Contig69:204095..2043461680791428.4245417-UTR-P-littoralis_Contig69:204095..204346Pylaiella littoralis U1_48UTRP-littoralis_Contig69 204096..204346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.53.1prot_P-littoralis_Contig69.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 203781..204095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.53.1

>prot_P-littoralis_Contig69.53.1 ID=prot_P-littoralis_Contig69.53.1|Name=mRNA_P-littoralis_Contig69.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MWVLLSEESSTELSLSRAFPFFAFVLFARSERHRDQSSAGGSVKSIYCTT
RDTSRLDIHPSIQGICARSCATSKARADSVHVVKHSLHTGRPREDDPDEK
ETTR*
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mRNA from alignment at P-littoralis_Contig69:203781..204346-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.53.1 ID=mRNA_P-littoralis_Contig69.53.1|Name=mRNA_P-littoralis_Contig69.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=566bp|location=Sequence derived from alignment at P-littoralis_Contig69:203781..204346- (Pylaiella littoralis U1_48)
ATTCCGTTTTTGTTTGTGTTTTGGAGGAGGAACGGACTCGGAAGGAAAGA
TGGCCGCGGAAACGATGGTTTTGATGAATATTCCCGTTGAGTTGTAGTTT
ATGTGCTACAAGTTTGTAGAGAGGGAGGACAGTACGGCCAATGAAGCCTG
CCGACTTTGAGGGTGTGTGTTTGTTGTGTTGTTGTGTACGTTTGTTTGTT
GTGTGTATGTGAGTGTGATGTTTCTTTTTTTGAGGTATCGTACGACAAGA
AATGTGGGTGTTGCTATCAGAGGAGAGCTCGACAGAGCTCAGCCTGTCTC
GTGCGTTTCCGTTTTTTGCGTTTGTGTTGTTCGCTAGAAGTGAAAGACAT
CGCGACCAAAGTAGCGCTGGAGGCTCAGTCAAGAGCATTTACTGCACCAC
GAGAGACACGTCACGTTTGGACATCCATCCTTCTATTCAAGGCATTTGCG
CTCGGTCGTGCGCTACAAGTAAAGCAAGAGCCGATTCGGTTCACGTCGTG
AAACATTCATTACACACAGGACGCCCGCGAGAAGATGATCCGGACGAAAA
AGAAACTACTCGCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:203781..204346-

>mRNA_P-littoralis_Contig69.53.1 ID=mRNA_P-littoralis_Contig69.53.1|Name=mRNA_P-littoralis_Contig69.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig69:203781..204346- (Pylaiella littoralis U1_48)
ATGTGGGTGTTGCTATCAGAGGAGAGCTCGACAGAGCTCAGCCTGTCTCG
TGCGTTTCCGTTTTTTGCGTTTGTGTTGTTCGCTAGAAGTGAAAGACATC
GCGACCAAAGTAGCGCTGGAGGCTCAGTCAAGAGCATTTACTGCACCACG
AGAGACACGTCACGTTTGGACATCCATCCTTCTATTCAAGGCATTTGCGC
TCGGTCGTGCGCTACAAGTAAAGCAAGAGCCGATTCGGTTCACGTCGTGA
AACATTCATTACACACAGGACGCCCGCGAGAAGATGATCCGGACGAAAAA
GAAACTACTCGCTGA
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