mRNA_P-littoralis_Contig69.116.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.116.1
Unique NamemRNA_P-littoralis_Contig69.116.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:504381..505383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size277
Hectar predicted targeting categoryother localisation
Exons3
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791428.053512-CDS-P-littoralis_Contig69:504380..5044811680791428.053512-CDS-P-littoralis_Contig69:504380..504481Pylaiella littoralis U1_48CDSP-littoralis_Contig69 504381..504481 -
1680791428.0656338-CDS-P-littoralis_Contig69:504715..5048091680791428.0656338-CDS-P-littoralis_Contig69:504715..504809Pylaiella littoralis U1_48CDSP-littoralis_Contig69 504716..504809 -
1680791428.075572-CDS-P-littoralis_Contig69:505302..5053831680791428.075572-CDS-P-littoralis_Contig69:505302..505383Pylaiella littoralis U1_48CDSP-littoralis_Contig69 505303..505383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.116.1prot_P-littoralis_Contig69.116.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 504381..505383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.116.1

>prot_P-littoralis_Contig69.116.1 ID=prot_P-littoralis_Contig69.116.1|Name=mRNA_P-littoralis_Contig69.116.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
MGVGDDTVGGVQDAPFSPVRRGPIFTKETIGGDDANSMDTDEDDRVHPDP
DADRFTPQGEDDDDDETMSEDEEEDEVREVLVHRAALLSCGT
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mRNA from alignment at P-littoralis_Contig69:504381..505383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.116.1 ID=mRNA_P-littoralis_Contig69.116.1|Name=mRNA_P-littoralis_Contig69.116.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1003bp|location=Sequence derived from alignment at P-littoralis_Contig69:504381..505383- (Pylaiella littoralis U1_48)
ATGGGAGTCGGAGATGATACGGTTGGAGGTGTGCAGGATGCTCCATTTTC
GCCAGTCAGAAGAGGACCTATTTTCACAAAGGCAAGTCCATGGCGCCTTG
TCGTCATTCACGCTAGCGTGCCCACCGCGGTGAGCTTTCCTATAGATTTG
TCGCCGGCATTCTGTGGTTTGAACGGTGAACGGAATTATGGACCTAAATA
CGATACATAGGCACAGATAGCCCACATGCCGAGATGGAGAGTCAAAGTGT
TTGGAGAAACCGCAGAAAGGGGGTATTGTAGTGAGTGCCATAAGGAGCGC
GAGAACTGGACAGCAGTACAGGCAGCAGTAGGGGCATCAGCACAGGCGTC
GTACAGGGGTAGCAGGCTTCGTATGTATAAAGGACTCCGGTGTCCCAGAT
TTATCGTGGGTTGATATACTAGCACTGCTGTTAGTTGCGTAAGGGTTGGG
TTTTCCGCATATATATCCAACATGCCGTAGAGTATCCTAGCTTTGTTGGC
CTTGCGCATGTGATTCGGCAAGGTTCTACGGTTCCTAACTTCTTATTCTC
CGTATTTCGTTATACTTCATACAGGAGACGATTGGCGGTGACGACGCTAA
TAGCATGGACACCGACGAAGACGATCGGGTACATCCCGATCCCGACGCTG
ACAGGTTTACGCCGCAAGGTACGACAAAACACAGAACAATTGCCGACCGC
GCCTGTTGTGCGTCACTTTACCATCAGCGGGCTCGTTGTAGGTGAAAACT
GTGTGGTTCCTTTTGCGTGGACTTGGCATGCCCAAATCTATTTTCTGGTG
CCCTGAAACATGACAACCCACGCTTGCCGAACGCCTGGCCCTCCCGACCC
TGCCCCCCGCCTTTCCCCCGCCCCTCGTTGTCTGCTTCCGTGGTATGACT
AGGAGAGGACGACGATGACGACGAAACGATGTCGGAAGATGAGGAGGAGG
ACGAAGTTCGAGAAGTCCTGGTACATCGTGCGGCCCTTTTGAGTTGTGGG
ACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:504381..505383-

>mRNA_P-littoralis_Contig69.116.1 ID=mRNA_P-littoralis_Contig69.116.1|Name=mRNA_P-littoralis_Contig69.116.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig69:504381..505383- (Pylaiella littoralis U1_48)
ATGGGAGTCGGAGATGATACGGTTGGAGGTGTGCAGGATGCTCCATTTTC
GCCAGTCAGAAGAGGACCTATTTTCACAAAGGAGACGATTGGCGGTGACG
ACGCTAATAGCATGGACACCGACGAAGACGATCGGGTACATCCCGATCCC
GACGCTGACAGGTTTACGCCGCAAGGAGAGGACGACGATGACGACGAAAC
GATGTCGGAAGATGAGGAGGAGGACGAAGTTCGAGAAGTCCTGGTACATC
GTGCGGCCCTTTTGAGTTGTGGGACG
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