mRNA_P-littoralis_Contig69.107.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.107.1
Unique NamemRNA_P-littoralis_Contig69.107.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:501416..502979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791427.8867884-CDS-P-littoralis_Contig69:501415..5014981680791427.8867884-CDS-P-littoralis_Contig69:501415..501498Pylaiella littoralis U1_48CDSP-littoralis_Contig69 501416..501498 +
1680791427.9067822-CDS-P-littoralis_Contig69:502898..5029771680791427.9067822-CDS-P-littoralis_Contig69:502898..502977Pylaiella littoralis U1_48CDSP-littoralis_Contig69 502899..502977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.107.1prot_P-littoralis_Contig69.107.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 501416..502977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.107.1

>prot_P-littoralis_Contig69.107.1 ID=prot_P-littoralis_Contig69.107.1|Name=mRNA_P-littoralis_Contig69.107.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
ESATWRDLGSHHKEDFIGKTRGHSPPTSPLPAGRDNGQCGDPGEGGAPPL
PVPT
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mRNA from alignment at P-littoralis_Contig69:501416..502979+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.107.1 ID=mRNA_P-littoralis_Contig69.107.1|Name=mRNA_P-littoralis_Contig69.107.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1564bp|location=Sequence derived from alignment at P-littoralis_Contig69:501416..502979+ (Pylaiella littoralis U1_48)
GAATCTGCAACTTGGAGGGACCTCGGATCTCATCACAAGGAAGACTTTAT
TGGAAAGACGCGCGGGCATTCCCCGCCGACAAGGTGAGATCCGCGGAAAT
TCATGCGCCCTCGAAAGGCGGGGCTGCTTCGCGCCAATTCTCGAGTACCC
TCCACGCCACCCGTGAGGCCTTCGGGTTAGTTGCTGATTAGCCCTACCAC
ACTCAACATGCTCATAGACCATATCTCAGAGAGCTTCCCATGCCAAGCCG
TTTGTAAATCCAACCCGTGTGGACCGAGAGCCAAGTGTAGTTCGGAATCT
GAAAATTCAGATTATGGGGTGACAGCAGGGCAACGCCTGGGACCCTCAGT
TTCTCGTGCGTTTTGTCTTTGAGTTAGAACGTGCTGTTCCCAGCTCCTGC
GTTTGAAAAAAGGTTGAACGCGAGCCGCCCTTCCCCCCACAGCAGTCCTG
TCCTGCGGTCACCAAAATTGTGAATGCCGTACGTAGCTTGTTCAGACCTC
TGCCTACACCTAGTCCTTCCTCCTATCCGCTTGAGAGGGCACGACGCTAG
TTCTAGTCTACCAAGTACACTGCTTCTACGGGGCGGGTGGACCATCCGGG
CTCTCCAGCCCACTCCTTTTCATGTCTTTCTCCGTGGCCGTGCAAAATCC
CAGCCCTGTGGTTGTGGTTCACGTGCGTGTGCGTCTGATGGATTAAGTCT
TGTTTAGCATTCACCCGTGCTGCTACAATTTGCTGTTTTGGCGATTATGA
CACCTTCCTGAGTACTTCTTTGGGTGCCTCTCCCACACAACGCCTGGTAC
CCTATCCGCACGCACTGCTAGACTTTTGACTGCCGGAGGAAATGTATATA
TGTGTTGGTGTTCTACAAGTGAGACAAATGTTTTCTTTACTAATTTACTA
CATATGTAGAAAATGGTGTCTGTTGCTGTACAGACTATTAATTTTTGGGT
TTTGGGAAACAATAATAGGCATGTACACTGCACCTCTTGCTTCTTGCTTT
CCTCCATAGGGGGGCCCACGCTATCTGTGGGCGGAGCCCAGATGGGGCGG
GCGGCGTTGGCGAGGTGCCTCGTCGTGGTCTTCGCTTTTGTCTCGGGTGG
GCTGTGCGCGTGCACACAACGCTTGTTTGCATCCGTGTGTAGTGTTTTGT
CGATAGATTCGCGTTGCTGCAGAGTGATTTGTTTTGGGCTGTTCGTCTCG
GCGTTATTGTAGATGCTCAAATTCTACAAAAATAAAACTCGAGTACGTCT
CGGGTACGGATACACTCGGCTCTAATTGTTACTAGTGACGGTAAAACTTG
TCAGGGTGTCTTGCTTCCCACGGCGCAGGGCCCTTCGACGGTGTATGTGC
GCGCCCATATAATAATGAAGTTTTACAAGGTCTAATGGCATCCCGGTATT
TTCTCGAAATATGACCTGACTTGCCATGGCTTCTTGGTGTTGTGCAATGC
CCTCTTCATTCCGTTTACCGCTGGCTTCTGTAGCCCCCTTCCTGCAGGTC
GCGACAATGGACAGTGCGGTGACCCCGGAGAGGGTGGTGCCCCTCCGCTT
CCAGTACCCACGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:501416..502979+

>mRNA_P-littoralis_Contig69.107.1 ID=mRNA_P-littoralis_Contig69.107.1|Name=mRNA_P-littoralis_Contig69.107.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig69:501416..502979+ (Pylaiella littoralis U1_48)
GAATCTGCAACTTGGAGGGACCTCGGATCTCATCACAAGGAAGACTTTAT
TGGAAAGACGCGCGGGCATTCCCCGCCGACAAGCCCCCTTCCTGCAGGTC
GCGACAATGGACAGTGCGGTGACCCCGGAGAGGGTGGTGCCCCTCCGCTT
CCAGTACCCACG
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