mRNA_P-littoralis_Contig69.57.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig69.57.1
Unique NamemRNA_P-littoralis_Contig69.57.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig69.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig69contigP-littoralis_Contig69:247831..251820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size619
Hectar predicted targeting categorychloroplast
Exons3
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791427.750579-CDS-P-littoralis_Contig69:247830..2479361680791427.750579-CDS-P-littoralis_Contig69:247830..247936Pylaiella littoralis U1_48CDSP-littoralis_Contig69 247831..247936 -
1680791427.7645202-CDS-P-littoralis_Contig69:248778..2490861680791427.7645202-CDS-P-littoralis_Contig69:248778..249086Pylaiella littoralis U1_48CDSP-littoralis_Contig69 248779..249086 -
1680791427.7754054-CDS-P-littoralis_Contig69:251615..2516841680791427.7754054-CDS-P-littoralis_Contig69:251615..251684Pylaiella littoralis U1_48CDSP-littoralis_Contig69 251616..251684 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791427.7876825-UTR-P-littoralis_Contig69:251684..2518201680791427.7876825-UTR-P-littoralis_Contig69:251684..251820Pylaiella littoralis U1_48UTRP-littoralis_Contig69 251685..251820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig69.57.1prot_P-littoralis_Contig69.57.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig69 247831..251684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig69.57.1

>prot_P-littoralis_Contig69.57.1 ID=prot_P-littoralis_Contig69.57.1|Name=mRNA_P-littoralis_Contig69.57.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=161bp
MRVPGCGGLYLAALALGGAIGYKISVTSTTGSAFLAPPSAAWSSAEPAAL
RFSGTRLATAARSRLVRSKGRGNALHTAPPGVAAAEGGAYSSNKRGGGGG
GDGASFAGHRPLEGNDALAAAGRWRRPNFPGSRLIVTSSSCPRLSPPLGT
AFVAAACFRGG
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mRNA from alignment at P-littoralis_Contig69:247831..251820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig69.57.1 ID=mRNA_P-littoralis_Contig69.57.1|Name=mRNA_P-littoralis_Contig69.57.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3990bp|location=Sequence derived from alignment at P-littoralis_Contig69:247831..251820- (Pylaiella littoralis U1_48)
CCGTGCTTCCGCCCTCTCTCTGCTTCCTTGCCCTGCCTGGCGATCACCAA
CCCCCGGATGCTTTAGCCAACGATCGTTGTTGTGGGTGTCGTGCTCGAGA
ATCATTCTATCATACACCAATTACTTCGTATAAAATATGCGAGTACCGGG
ATGCGGAGGATTATATCTGGCGGCGTTGGCCTTGGGCGGCGCGATAGGGT
ACAAGGTGAGCGTTGGTGGGCAACCATGGAAGCGGTGTGCCTTTGAGTGT
TTGTCACTGGTGCTCTCCATCATCGTCCCTGTTGCAAAATTTTCTTTGTG
CTCAACGGCGAGAGGAACTGAATTGCGGTAGCGGAGGGAGGATGCTTCCG
CATCTGGCTGCTGCACGTATTTCTACTGCTGTGAAACGGAGGTGCTTCGA
GGAGGCACCTCTCTTCGTGAAATGTCCTCGTCTTTATGGACAAGTATCAT
TTGTACCGACCGACAAAATGTTCCGGCAGCAGTTGGTTGACAGATTGCGG
GAGGTTACACCCTCCCATAATCCCATCCTGTTGTACTTTTGCGGTCAATA
CGTGGAGTTACAGAAAGCCAGATGGGTGCAGCTGTTTCTGGTACTACACA
CTGCCGCGGTTCTTCTCCCATCGCTACGGCACCTACAGAAAAGTACTCCG
GAGTATACATTTTACTTCGAGAGCTGGCGTTTTGGTTTGTTTCTCTCACA
TGACACATGACTTCCGCCGTTGTCCCGCAGTTACTGCACTCGCCCTTGCA
TGATATAAGTACTTGTATTGCTTGGATGACATGCACGGAAGTATTGAGTA
CTTGTATATGAAGTTGCTCGACATGTGTGCAAGTGTTTCCGCTCTCGGGG
TGTGTGAGGGGTTGGCACACGACCTGCCACCTTCTAAGGCCGCACCCGCG
GCGGTGCTTCCTGGGATAAAATGCGCGATTTGCAGGCACGGGTCCATTCC
ACAACCAACCACGGCCCTTTCTTTGAACTCCTTGTGTTTGCCAGCCAGCC
TAGACGCAAATTGATCCACATCACTTCGTTGCCAGCCAGCCTAGAAGTAG
ATTGATCGACACCACCTTGTACCTCGTAGTAAGCACCAAGTACAAGTATC
ATGTTTTCAGGTTTCGAGCTTACAGTATAACGATCGCTTTCATATGACAC
GATATACAGCAGAGTGCACGTGCCAGATGGATCAATTCACGGCCCACGGC
TTTACGCCGCTACCATGCGGAACAAACGTCAAAGCGCTGGCTTTTACTAC
ATATGCGTCTTTGTCGGCACAGCAGCAAGCAGAAGGTTCCAACTGGGTCC
AACCTTCGCCTCTCGTGTACCTCTTTGTAGTAAAGTGGGGGACAGCGTTA
TTATCAGCGTTCATTCGTTAGTCAGTACAACGACAACAACTCGTTCGCAT
GCAAGTTGCAAATCTTTGAGCCGATGTGGGATTGCGATCAGGCGCACCAC
AGAGACGGCCTTTGTGACTTGTTGGATTTGCCAGCACGGCACGCCTGCAC
GATATTTCGAAGTACATACCATCATGTACGACGGTATTCCCTACTTTGCT
ACTACTTCGTCGAAGGGACTTCACGTATACCATTACATACGTACATACGA
GTAGACAGCTTGACTCTCTCCCTCTCCCTCAATTCAGCTGAGTACCAGTT
TAGCCCTTTGGCCTCGCTCACCCGTTTTTACTAGTCGCACACTGGAGAGG
CGCTTCGAACTGCAGTGCCAACGGAAGATTCACCGGCCACCTCCAGCAAG
GAAAGGAAAATACGCGTTTAGATCTGGTTATTCGGAGGTGAAAGAAAATT
ACAACCTGCTGGGTGTTGGGATGGCGAAACGGTTCTTCTGTTCGCGTGTT
TTTTAGACTTTTTATTCACTGTGTGGTGCTCGGGCCTGTGATATGATGCC
AGATACGTATATTGACGTATTGGTTTGTTTTGTGGACACAAGCGTGACAT
CAGAACCATTGTACATGATATGCACACTGCAACAAAATTAGGAAGATACG
AAAATCCTCTGGGGCCATTCCAGTCGAGGCTCCTTGACCTCGTGACAGTC
CGACGGATCTTTGGCTCTTCCTTTCAGTGGACAAAACCGGATGACCCTTT
GGTCGCCCCGGATGCCACTCTGGACTTTACGCTCCGTGCCAACATGTCGT
ATGATGTCACGGAAGAAAATTCCACCTTGCCCCTGGTCGTGGGCCAATAC
GACCACTCCTTTGGGGTCTTCTGAGGCTTCGCTTGCTGGAGGTAGCCTGG
GTTAACGTTGGCGTCGAGCTTATTCACACGAATGGCGGTGCTGCCGCCTT
CCAGGGGAGAGAACGAGATATATTATACAAAGCACACACACACACATCTA
CCATCGAAGATGAAGTCGTCGACTTACAGAAAGGCCGAAAAGAACAGCTG
AAAGGGAAGCGGAAATAGAGAACGCCAAGTTGGTGGCAGAGCTCGTGACT
GTTAGGGCAGCTCTGGCGGCAGAACGAACACTACCGGGGACGCCGAGGGG
CTCCTTGGAGGTGAATCTAACCCCCCCCCCCGATCTAAAGGATCTGATCT
GTCCTTTGTGGAGGTAGATCTAACCCCGCTTCGATCAAAGGGTCTGATCG
GTCCTACGATATGTGTGAGATAGCATAGACGAAAGATTGTAAATTATATC
CCTCAACCCAACAATTATATCCTACCCGCTACCTGTCACATGTTTGCCCC
CGCTCAACATGCACCTCCATGTACGCATACGCAGATTTCTGTCACGTCGA
CGACGGGTTCGGCTTTCCTGGCCCCTCCCTCGGCAGCGTGGTCATCCGCG
GAGCCCGCCGCTCTCCGTTTCTCCGGGACGAGGTTGGCCACCGCCGCTAG
GAGCCGCCTCGTCCGCAGCAAGGGTCGTGGCAACGCTCTCCACACCGCCC
CACCAGGAGTCGCCGCTGCCGAAGGCGGTGCCTACAGCAGCAACAAACGC
GGTGGCGGTGGCGGGGGCGATGGTGCATCCTTCGCCGGACATCGCCCTCT
CGAAGGAAATGATGCCCTTGCCGCAGCCGGGAGATGGAGGAGGTGAGGAA
TATGAGAGGGGGCACCGGGGTACCGTTGCCGGGTGTTGGACACTTGTCTT
GCTTTGCTGCTCTCTCTTGTTCGTTTCGTTGACCGCCACGGCGGTGGGGA
TAGATCGCGGAGGGTTGTGGCGTTTAGCTCTGGTGTCGCACGTGGGGGGG
GGGAGAGAGCGCGCACTCGTTTTTGTACTTTTGTATTTATTTCATATTGA
TGGTGACGACTGCAGTCACGTGTCCCGCGCATGTCGCCAAAATATGGCAG
TCTCGCCTATATACACTTGTATCTGCAATGTACTGACGATACCTGTATAC
GCAATAAATTGTGAACGCCCAGTTTTGATGTTGAAACTTGAGTTCGTTCA
CGTAATATTTCAAAAGTGTAAAATCTTTTGCGTGGAGTCTCCGGGAGCAG
GAACTTTATCTACCCAATGATACACTAGCCGGAGAAACGTTTACAGTAGA
CGAAGTCGGATTTGGCCCATAAAAAGTAGCAGAGGATGCTGCTGTAGAGT
ACACTCAACAGCAAGGGGCGGAGGTCGTTCTTGACCACCGCGGTAAGCAC
GCAAAGCGCACGCGATGGCCAAGCACTCAGGTAGATCTACAGAAACCTTT
GGAAGCGGCTCGATATTCAGTGGGAGATGTGCTCCTGCGAACCTGAGGCG
GGCGATCACATACAAAGAGGCCAACACAAAAGTACGGCAAAAATAAGGCA
GTCAAATAAATTAGGACCATATATCCATCACCCCGTTCATTGTCAGAAAA
AAGGACTACTTTGTTCGGTCTCTATCATGGTTTGAGACGCCCCCCCCCCT
GCCACTCCTCCGATGCTATCGTGCGTTTGAACAGGCCCAATTTCCCAGGG
AGCCGCCTCATCGTGACCTCTTCGTCTTGCCCTCGCCTTTCCCCGCCTCT
CGGGACGGCGTTCGTTGCTGCGGCGTGTTTTAGGGGTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig69:247831..251820-

>mRNA_P-littoralis_Contig69.57.1 ID=mRNA_P-littoralis_Contig69.57.1|Name=mRNA_P-littoralis_Contig69.57.1|organism=Pylaiella littoralis U1_48|type=CDS|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig69:247831..251820- (Pylaiella littoralis U1_48)
ATGCGAGTACCGGGATGCGGAGGATTATATCTGGCGGCGTTGGCCTTGGG
CGGCGCGATAGGGTACAAGATTTCTGTCACGTCGACGACGGGTTCGGCTT
TCCTGGCCCCTCCCTCGGCAGCGTGGTCATCCGCGGAGCCCGCCGCTCTC
CGTTTCTCCGGGACGAGGTTGGCCACCGCCGCTAGGAGCCGCCTCGTCCG
CAGCAAGGGTCGTGGCAACGCTCTCCACACCGCCCCACCAGGAGTCGCCG
CTGCCGAAGGCGGTGCCTACAGCAGCAACAAACGCGGTGGCGGTGGCGGG
GGCGATGGTGCATCCTTCGCCGGACATCGCCCTCTCGAAGGAAATGATGC
CCTTGCCGCAGCCGGGAGATGGAGGAGGCCCAATTTCCCAGGGAGCCGCC
TCATCGTGACCTCTTCGTCTTGCCCTCGCCTTTCCCCGCCTCTCGGGACG
GCGTTCGTTGCTGCGGCGTGTTTTAGGGGTGGT
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