mRNA_P-littoralis_Contig689.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig689.32.1
Unique Name	mRNA_P-littoralis_Contig689.32.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig689.32.1 vs. uniprot
Match: A0A6H5L4Y6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.560e-15
Identity = 39/73 (53.42%), Postives = 58/73 (79.45%), Query Frame = 1

Query:    1 FGCGPTAIGSIRRERKTLEAAAASSARRTSSKSARGGDFPQVDKMAMTMVEEARKVPLPLTRASIESFGVAAR 219
            +    +AI  I+ +R+ LE AAA++AR T+SKS+R GDFP+++K  + ++EEAR+VPLP+TRA+IESFG+A R
Sbjct:  131 YSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVR 203

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BLAST of mRNA_P-littoralis_Contig689.32.1 vs. uniprot
Match: A0A6H5KEK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.750e-15
Identity = 39/73 (53.42%), Postives = 58/73 (79.45%), Query Frame = 1

Query:    1 FGCGPTAIGSIRRERKTLEAAAASSARRTSSKSARGGDFPQVDKMAMTMVEEARKVPLPLTRASIESFGVAAR 219
            +    +AI  I+ +R+ LE AAA++AR T+SKS+R GDFP+++K  + ++EEAR+VPLP+TRA+IESFG+A R
Sbjct:  110 YSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVR 182

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BLAST of mRNA_P-littoralis_Contig689.32.1 vs. uniprot
Match: A0A6H5KNH6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.770e-15
Identity = 39/73 (53.42%), Postives = 58/73 (79.45%), Query Frame = 1

Query:    1 FGCGPTAIGSIRRERKTLEAAAASSARRTSSKSARGGDFPQVDKMAMTMVEEARKVPLPLTRASIESFGVAAR 219
            +    +AI  I+ +R+ LE AAA++AR T+SKS+R GDFP+++K  + ++EEAR+VPLP+TRA+IESFG+A R
Sbjct:  131 YSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVR 203

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BLAST of mRNA_P-littoralis_Contig689.32.1 vs. uniprot
Match: A0A6H5JWL9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL9_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.080e-8
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1

Query:    1 FGCGPTAIGSIRRERKTLEAAAASSARRTSSKSARGGDFPQVDKMAMTMVEEARKVPLPLTRASIESFGVAAR 219
            F C    + ++R +RK +EAAAA  A     K+AR GDFP+VDK+++ ++E+AR+  +P+TR    SFG +AR
Sbjct:   56 FSCSVRFLATVRSDRKAIEAAAA--AGNGCQKNARKGDFPEVDKISLDLLEKARQAKIPVTRDVFRSFGRSAR 126

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BLAST of mRNA_P-littoralis_Contig689.32.1 vs. uniprot
Match: A0A6H5JTF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF6_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.760e-7
Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 1

Query:    1 FGCGPTAIGSIRRERKTLEAAAASSARRTSSKSARGGDFPQVDKMAMTMVEEARKVPLPLTRASIESFGVAAR 219
            FGC    + +++ +RK +EAA A+     + K+AR GDFP+VD +A+ +  +ARK  +P+TR  + SFG +AR
Sbjct:  116 FGCSERFVRTVKADRKKVEAATAAGG--GTQKTARKGDFPEVDAIALYLHAKARKAKMPVTRDVLRSFGRSAR 186

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BLAST of mRNA_P-littoralis_Contig689.32.1 vs. uniprot
Match: A0A6H5JQU7_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU7_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.490e-7
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = 1

Query:    1 FGCGPTAIGSIRRERKTLEAAAASSARRTSSKSARGGDFPQVDKMAMTMVEEARKVPLPLTRASIESFGVAAR 219
            F C    IG+++  R+ +E A A+     S K+AR GDFP+VD++A+ ++++ARK  +P+TR  + SFG +AR
Sbjct:  117 FTCSLRFIGTVKAGRQKVEIATAAGC--GSQKAARKGDFPEVDEIALDLLDKARKAKMPVTRDVLRSFGRSAR 187

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BLAST of mRNA_P-littoralis_Contig689.32.1 vs. uniprot
Match: A0A6H5JCH9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.650e-6
Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 1

Query:    1 FGCGPTAIGSIRRERKTLEAAAASSARRTSSKSARGGDFPQVDKMAMTMVEEARKVPLPLTRASIESFGVAAR 219
            FGC      +++ +RK +EAA A+     + K+AR GDFP+VD +A+ ++ +ARK  +P+TR  + SFG +AR
Sbjct:  116 FGCSERFGRTVKADRKKVEAATAAGG--GTQKTARKGDFPEVDAIALYLLAKARKAKVPVTRDVLRSFGRSAR 186

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BLAST of mRNA_P-littoralis_Contig689.32.1 vs. uniprot
Match: A0A6H5J7S2_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7S2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.280e-6
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = 1

Query:    1 FGCGPTAIGSIRRERKTLEAAAASSARRTSSKSARGGDFPQVDKMAMTMVEEARKVPLPLTRASIESFGVAAR 219
            F C    IG+++  R+ +E A A+    +S K+AR GDFP+VD++A+ ++++ARK  +P+TR  + SFG + R
Sbjct:  117 FKCLLRFIGTVKAGRQKVETATAAGC--SSQKTARKGDFPEVDEIALDLLDKARKAKMPVTRDVLRSFGRSTR 187

[Close]

BLAST of mRNA_P-littoralis_Contig689.32.1 vs. uniprot
Match: A0A6H5JH32_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH32_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 5.800e-6
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1

Query:    1 FGCGPTAIGSIR--RERKTLEAAAASSARRTSSKSARGGDFPQVDKMAMTMVEEARKVPLPLTRASIESFGVAAR 219
            F C    +G+++  RE+K   A AA      S K+AR GDFP+VD++A+ ++E+ARK  +P+TR  + SFG +AR
Sbjct:   15 FKCSLRFMGTVKTGREKKVETAIAAGCG---SQKTARKGDFPEVDEIALDLLEKARKAIMPVTRDVLRSFGRSAR 86

[Close]

BLAST of mRNA_P-littoralis_Contig689.32.1 vs. uniprot
Match: A0A6H5JUX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX0_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 7.540e-6
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1

Query:    1 FGCGPTAIGSIRRERKTLEAAAASSARRTSSKSARGGDFPQVDKMAMTMVEEARKVPLPLTRASIESFGVAAR 219
            FGC    + + + +RK +EAA  +     + K+AR GDFP+VD +A+ ++ +ARK  +P+TR  + SFG  AR
Sbjct:  116 FGCSERFVRTGKADRKKVEAATPAGG--GTQKTARKGDFPEVDAIALYLLAKARKAKMPVTRDVLRSFGRTAR 186

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig689.32.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig689.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
A0A6H5L4Y6_9PHAE	2.560e-15	53.42	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEK9_9PHAE	4.750e-15	53.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KNH6_9PHAE	4.770e-15	53.42	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWL9_9PHAE	2.080e-8	43.84	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JTF6_9PHAE	2.760e-7	41.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQU7_9PHAE	6.490e-7	41.10	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5JCH9_9PHAE	1.650e-6	41.10	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5J7S2_9PHAE	2.280e-6	39.73	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5JH32_9PHAE	5.800e-6	42.67	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5JUX0_9PHAE	7.540e-6	39.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig689	contig	P-littoralis_Contig689:139131..139807 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	225
Hectar predicted targeting category	other localisation
Exons	2
Cds size	222

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791427.4937487-CDS-P-littoralis_Contig689:139130..139253	1680791427.4937487-CDS-P-littoralis_Contig689:139130..139253	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig689 139131..139253 +
1680791427.507862-CDS-P-littoralis_Contig689:139706..139805	1680791427.507862-CDS-P-littoralis_Contig689:139706..139805	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig689 139707..139805 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig689.32.1	prot_P-littoralis_Contig689.32.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig689 139131..139805 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig689:139131..139807+
coding sequence from alignment at P-littoralis_Contig689:139131..139807+

protein sequence of mRNA_P-littoralis_Contig689.32.1

>prot_P-littoralis_Contig689.32.1 ID=prot_P-littoralis_Contig689.32.1|Name=mRNA_P-littoralis_Contig689.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
FGCGPTAIGSIRRERKTLEAAAASSARRTSSKSARGGDFPQVDKMAMTMV
EEARKVPLPLTRASIESFGVAARK

mRNA from alignment at P-littoralis_Contig689:139131..139807+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig689.32.1 ID=mRNA_P-littoralis_Contig689.32.1|Name=mRNA_P-littoralis_Contig689.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=677bp|location=Sequence derived from alignment at P-littoralis_Contig689:139131..139807+ (Pylaiella littoralis U1_48)
TTTGGTTGTGGCCCCACCGCAATAGGATCGATTCGGAGGGAGAGGAAGAC
CCTGGAAGCAGCCGCAGCATCTTCTGCACGTAGAACATCCTCTAAGAGCG
CGCGAGGAGGGGACTTTCCCCAGGTGTGTGTTGCATGTTTATTTTTTTGT
TCTTCTCACTTGCTTTCTTCGGCCTGGGATGTATCTCCATGTAACTGCTG
TAATAATTTTATAGTTTTGAAATTGAAAATGTGTACTACAGCTACAGCAT
TGCTGTTGTCCTGATATCTCCTTGTTTATAATTTTGAATTTGAAATGAAC
TCATCAAGCACAGCGCAGCAGTACTATCTGTAAATACTTGATACAAGTTG
CTTTTTTTTTACAGCAGCAATCATGATTTAAATGTTTCAGAGTACTGTAC
TGTAATATTAATATTATTACTGTAAGTGAATGATGCCGTGTACTCTGCAC
AGTACTGTTGTAGCTGATGATGCCTTCAGGCCTTTCGACCGCACCAGACA
TTTTACAAAAAGTATCAGAAAGTGGTATGAAGCTCTCAATAAACTTCGGT
TCCACTCTCGTGCTCCTTTCAAGCAGGTGGATAAGATGGCCATGACGATG
GTAGAGGAAGCCAGGAAGGTGCCGCTGCCGCTTACGCGTGCATCGATCGA
GTCGTTTGGGGTCGCCGCCAGGAAGAA

Coding sequence (CDS) from alignment at P-littoralis_Contig689:139131..139807+

>mRNA_P-littoralis_Contig689.32.1 ID=mRNA_P-littoralis_Contig689.32.1|Name=mRNA_P-littoralis_Contig689.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig689:139131..139807+ (Pylaiella littoralis U1_48)
TTTGGTTGTGGCCCCACCGCAATAGGATCGATTCGGAGGGAGAGGAAGAC
CCTGGAAGCAGCCGCAGCATCTTCTGCACGTAGAACATCCTCTAAGAGCG
CGCGAGGAGGGGACTTTCCCCAGGTGGATAAGATGGCCATGACGATGGTA
GAGGAAGCCAGGAAGGTGCCGCTGCCGCTTACGCGTGCATCGATCGAGTC
GTTTGGGGTCGCCGCCAGGAAG